RNA–Protein interactions for RNA: ENST00000413364.6

LITAF-203, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 2 BASIC

Gene LITAF, Length 2,292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-203ENST00000413364 NISCHQ9Y2I1 1504 aa28.17■■■□□ 2.1
LITAF-203ENST00000413364 CCDC180Q9P1Z9 1646 aa24.31■■□□□ 1.48
LITAF-203ENST00000413364 ZCCHC6Q5VYS8 1495 aaKnown RBP23.74■■□□□ 1.39
LITAF-203ENST00000413364 SHROOM4Q9ULL8 1493 aa23.34■■□□□ 1.33
LITAF-203ENST00000413364 DCAF1Q9Y4B6 1507 aa23.26■■□□□ 1.31
LITAF-203ENST00000413364 DCAF8L2P0C7V8 631 aa23.17■■□□□ 1.3
LITAF-203ENST00000413364 MYO15BQ96JP2 1530 aa22.81■■□□□ 1.24
LITAF-203ENST00000413364 ABCC9O60706 1549 aa22.68■■□□□ 1.22
LITAF-203ENST00000413364 SUPT5HO00267 1087 aaKnown RBP22.66■■□□□ 1.22
LITAF-203ENST00000413364 NACADO15069 1562 aa22.56■■□□□ 1.2
LITAF-203ENST00000413364 SCRIBQ14160 1630 aa22.48■■□□□ 1.19
LITAF-203ENST00000413364 RB1CC1Q8TDY2 1594 aa22.27■■□□□ 1.16
LITAF-203ENST00000413364 RSF1Q96T23 1441 aaPredicted RBP22.04■■□□□ 1.12
LITAF-203ENST00000413364 PELP1Q8IZL8 1130 aaKnown RBP21.92■■□□□ 1.1
LITAF-203ENST00000413364 CHIC1Q5VXU3 224 aa21.91■■□□□ 1.1
LITAF-203ENST00000413364 CECR2Q9BXF3 1484 aa21.88■■□□□ 1.09
LITAF-203ENST00000413364 UNC13AQ9UPW8 1703 aa21.83■■□□□ 1.09
LITAF-203ENST00000413364 MROH2BQ7Z745 1585 aa21.8■■□□□ 1.08
LITAF-203ENST00000413364 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
LITAF-203ENST00000413364 WIZO95785 1651 aa21.63■■□□□ 1.05
LITAF-203ENST00000413364 BICRAQ9NZM4 1560 aa21.62■■□□□ 1.05
LITAF-203ENST00000413364 SMARCA4P51532 1647 aa21.55■■□□□ 1.04
LITAF-203ENST00000413364 MYT1Q01538 1121 aa21.5■■□□□ 1.03
LITAF-203ENST00000413364 PABPN1Q86U42 306 aaKnown RBP eCLIP21.5■■□□□ 1.03
LITAF-203ENST00000413364 TOP2AP11388 1531 aaKnown RBP21.4■■□□□ 1.02
LITAF-203ENST00000413364 TRIM41Q8WV44 630 aa21.26■□□□□ 0.99
LITAF-203ENST00000413364 PEG3Q9GZU2 1588 aa21.26■□□□□ 0.99
LITAF-203ENST00000413364 EIF4G1Q04637 1599 aaKnown RBP21.23■□□□□ 0.99
LITAF-203ENST00000413364 SMARCA2P51531 1590 aa21.22■□□□□ 0.99
LITAF-203ENST00000413364 CCDC88BA6NC98 1476 aa21.22■□□□□ 0.99
LITAF-203ENST00000413364 LOC105371045A0A1W2PR82 267 aa21.11■□□□□ 0.97
LITAF-203ENST00000413364 ATAD2BQ9ULI0 1458 aa21.11■□□□□ 0.97
LITAF-203ENST00000413364 BAZ1BQ9UIG0 1483 aaKnown RBP21.01■□□□□ 0.95
LITAF-203ENST00000413364 ABCC8Q09428 1581 aa20.91■□□□□ 0.94
LITAF-203ENST00000413364 FAM9AQ8IZU1 332 aaPredicted RBP20.91■□□□□ 0.94
LITAF-203ENST00000413364 HRCP23327 699 aa20.9■□□□□ 0.94
LITAF-203ENST00000413364 NCAPD3P42695 1498 aa20.84■□□□□ 0.93
LITAF-203ENST00000413364 HMGXB3Q12766 1538 aa20.84■□□□□ 0.93
LITAF-203ENST00000413364 WRNQ14191 1432 aaPredicted RBP eCLIP20.72■□□□□ 0.91
LITAF-203ENST00000413364 EEA1Q15075 1411 aa20.63■□□□□ 0.89
LITAF-203ENST00000413364 SOGA1O94964 1423 aa20.62■□□□□ 0.89
LITAF-203ENST00000413364 SYNJ1O43426 1573 aa20.62■□□□□ 0.89
LITAF-203ENST00000413364 EHMT2Q96KQ7 1210 aa20.62■□□□□ 0.89
LITAF-203ENST00000413364 PCGF6Q9BYE7 350 aa20.59■□□□□ 0.89
LITAF-203ENST00000413364 TTBK1Q5TCY1 1321 aaPredicted RBP20.54■□□□□ 0.88
LITAF-203ENST00000413364 RUSC2Q8N2Y8 1516 aa20.52■□□□□ 0.88
LITAF-203ENST00000413364 CC2D2AQ9P2K1 1620 aa20.51■□□□□ 0.87
LITAF-203ENST00000413364 CSRNP3Q8WYN3 585 aa20.51■□□□□ 0.87
LITAF-203ENST00000413364 CFTRP13569 1480 aa20.5■□□□□ 0.87
LITAF-203ENST00000413364 TOP2BQ02880 1626 aa20.48■□□□□ 0.87
LITAF-203ENST00000413364 TRIM26Q12899 539 aaPredicted RBP20.46■□□□□ 0.87
LITAF-203ENST00000413364 BIVM-ERCC5R4GMW8 1640 aa20.44■□□□□ 0.86
LITAF-203ENST00000413364 TNIKQ9UKE5 1360 aa20.41■□□□□ 0.86
LITAF-203ENST00000413364 GOLGA3Q08378 1498 aa20.38■□□□□ 0.85
LITAF-203ENST00000413364 PRDM2Q13029 1718 aa20.37■□□□□ 0.85
LITAF-203ENST00000413364 CADPSQ9ULU8 1353 aa20.35■□□□□ 0.85
LITAF-203ENST00000413364 CUX1P39880 1505 aa20.35■□□□□ 0.85
LITAF-203ENST00000413364 KIF21BO75037 1637 aa20.34■□□□□ 0.85
LITAF-203ENST00000413364 CEP162Q5TB80 1403 aa20.34■□□□□ 0.85
LITAF-203ENST00000413364 CEP164Q9UPV0 1460 aa20.34■□□□□ 0.85
LITAF-203ENST00000413364 UBTFP17480 764 aaKnown RBP20.29■□□□□ 0.84
LITAF-203ENST00000413364 RAPGEF2Q9Y4G8 1499 aa20.18■□□□□ 0.82
LITAF-203ENST00000413364 KIF27Q86VH2 1401 aa20.15■□□□□ 0.82
LITAF-203ENST00000413364 SCAF1Q9H7N4 1312 aaKnown RBP20.15■□□□□ 0.82
LITAF-203ENST00000413364 PRXQ9BXM0 1461 aa20.13■□□□□ 0.81
LITAF-203ENST00000413364 FANCD2Q9BXW9 1451 aa20.13■□□□□ 0.81
LITAF-203ENST00000413364 ERICH3Q5RHP9 1530 aa20.12■□□□□ 0.81
LITAF-203ENST00000413364 PPARGC1BQ86YN6 1023 aaKnown RBP20.09■□□□□ 0.81
LITAF-203ENST00000413364 CLIP1P30622 1438 aa20.08■□□□□ 0.81
LITAF-203ENST00000413364 FGD5Q6ZNL6 1462 aa20.06■□□□□ 0.8
LITAF-203ENST00000413364 NESP48681 1621 aa20.05■□□□□ 0.8
LITAF-203ENST00000413364 LAMC3Q9Y6N6 1575 aa20.04■□□□□ 0.8
LITAF-203ENST00000413364 CUX2O14529 1486 aa20.02■□□□□ 0.8
LITAF-203ENST00000413364 DNMBPQ6XZF7 1577 aa20.01■□□□□ 0.79
LITAF-203ENST00000413364 DNAJC5BQ9UF47 199 aa19.96■□□□□ 0.79
LITAF-203ENST00000413364 VPS8Q8N3P4 1428 aa19.96■□□□□ 0.79
LITAF-203ENST00000413364 TOPBP1Q92547 1522 aa19.96■□□□□ 0.79
LITAF-203ENST00000413364 IGF1RP08069 1367 aa19.95■□□□□ 0.78
LITAF-203ENST00000413364 POLA1P09884 1462 aaPredicted RBP19.9■□□□□ 0.78
LITAF-203ENST00000413364 PDS5BQ9NTI5 1447 aa19.89■□□□□ 0.77
LITAF-203ENST00000413364 ABCA10Q8WWZ4 1543 aa19.88■□□□□ 0.77
LITAF-203ENST00000413364 URB2Q14146 1524 aaKnown RBP19.86■□□□□ 0.77
LITAF-203ENST00000413364 ZEB1P37275 1124 aaPredicted RBP19.86■□□□□ 0.77
LITAF-203ENST00000413364 RANGAP1P46060 587 aaPredicted RBP19.86■□□□□ 0.77
LITAF-203ENST00000413364 RAD54L2Q9Y4B4 1467 aa19.85■□□□□ 0.77
LITAF-203ENST00000413364 CARMIL1Q5VZK9 1371 aa19.85■□□□□ 0.77
LITAF-203ENST00000413364 ARAP1Q96P48 1450 aa19.83■□□□□ 0.77
LITAF-203ENST00000413364 APLP2Q06481 763 aa19.77■□□□□ 0.76
LITAF-203ENST00000413364 KIF21AQ7Z4S6 1674 aa19.77■□□□□ 0.76
LITAF-203ENST00000413364 WDR97A6NE52 1622 aa19.75■□□□□ 0.75
LITAF-203ENST00000413364 ARHGAP35Q9NRY4 1499 aa19.75■□□□□ 0.75
LITAF-203ENST00000413364 CUL7Q14999 1698 aa19.71■□□□□ 0.75
LITAF-203ENST00000413364 ABCA5Q8WWZ7 1642 aa19.67■□□□□ 0.74
LITAF-203ENST00000413364 TDRD9Q8NDG6 1382 aaKnown RBP19.63■□□□□ 0.73
LITAF-203ENST00000413364 GAPVD1Q14C86 1478 aa19.63■□□□□ 0.73
LITAF-203ENST00000413364 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.62■□□□□ 0.73
LITAF-203ENST00000413364 MRC2Q9UBG0 1479 aa19.62■□□□□ 0.73
LITAF-203ENST00000413364 TARBP1Q13395 1621 aaKnown RBP19.62■□□□□ 0.73
LITAF-203ENST00000413364 CCER1Q8TC90 406 aaPredicted RBP19.59■□□□□ 0.73
LITAF-203ENST00000413364 KANK4Q5T7N3 995 aaPredicted RBP19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms