RNA–Protein interactions for RNA: ENST00000413040.6

NUB1-201, Transcript of negative regulator of ubiquitin like proteins 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NUB1, Length 3,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUB1-201ENST00000413040 NISCHQ9Y2I1 1504 aa28.17■■■□□ 2.1
NUB1-201ENST00000413040 SHROOM4Q9ULL8 1493 aa24.57■■□□□ 1.52
NUB1-201ENST00000413040 SUPT5HO00267 1087 aaKnown RBP24.15■■□□□ 1.46
NUB1-201ENST00000413040 DCAF8L2P0C7V8 631 aa24.11■■□□□ 1.45
NUB1-201ENST00000413040 ZCCHC6Q5VYS8 1495 aaKnown RBP23.76■■□□□ 1.39
NUB1-201ENST00000413040 CCDC180Q9P1Z9 1646 aa23.7■■□□□ 1.38
NUB1-201ENST00000413040 CHIC1Q5VXU3 224 aa23.22■■□□□ 1.31
NUB1-201ENST00000413040 MYO15BQ96JP2 1530 aa23.01■■□□□ 1.27
NUB1-201ENST00000413040 DCAF1Q9Y4B6 1507 aa22.88■■□□□ 1.25
NUB1-201ENST00000413040 PCGF6Q9BYE7 350 aa22.73■■□□□ 1.23
NUB1-201ENST00000413040 LOC105371045A0A1W2PR82 267 aa22.72■■□□□ 1.23
NUB1-201ENST00000413040 SCRIBQ14160 1630 aa22.59■■□□□ 1.21
NUB1-201ENST00000413040 HRCP23327 699 aa22.51■■□□□ 1.19
NUB1-201ENST00000413040 ABCC9O60706 1549 aa22.48■■□□□ 1.19
NUB1-201ENST00000413040 FAM9AQ8IZU1 332 aaPredicted RBP22.41■■□□□ 1.18
NUB1-201ENST00000413040 EHMT2Q96KQ7 1210 aa22.39■■□□□ 1.18
NUB1-201ENST00000413040 RSF1Q96T23 1441 aaPredicted RBP22.39■■□□□ 1.18
NUB1-201ENST00000413040 TRIM41Q8WV44 630 aa22.37■■□□□ 1.17
NUB1-201ENST00000413040 PPARGC1BQ86YN6 1023 aaKnown RBP22.26■■□□□ 1.15
NUB1-201ENST00000413040 RB1CC1Q8TDY2 1594 aa22.14■■□□□ 1.13
NUB1-201ENST00000413040 CECR2Q9BXF3 1484 aa22.14■■□□□ 1.13
NUB1-201ENST00000413040 TRIM26Q12899 539 aaPredicted RBP22.1■■□□□ 1.13
NUB1-201ENST00000413040 NACADO15069 1562 aa22.06■■□□□ 1.12
NUB1-201ENST00000413040 MROH2BQ7Z745 1585 aa21.99■■□□□ 1.11
NUB1-201ENST00000413040 WIZO95785 1651 aa21.85■■□□□ 1.09
NUB1-201ENST00000413040 PABPN1Q86U42 306 aaKnown RBP eCLIP21.69■■□□□ 1.06
NUB1-201ENST00000413040 TTBK1Q5TCY1 1321 aaPredicted RBP21.63■■□□□ 1.05
NUB1-201ENST00000413040 BAZ1AQ9NRL2 1556 aaPredicted RBP21.63■■□□□ 1.05
NUB1-201ENST00000413040 ZEB1P37275 1124 aaPredicted RBP21.57■■□□□ 1.04
NUB1-201ENST00000413040 ABCC8Q09428 1581 aa21.48■■□□□ 1.03
NUB1-201ENST00000413040 CCDC88BA6NC98 1476 aa21.45■■□□□ 1.02
NUB1-201ENST00000413040 SMARCA4P51532 1647 aa21.42■■□□□ 1.02
NUB1-201ENST00000413040 UBTFP17480 764 aaKnown RBP21.41■■□□□ 1.02
NUB1-201ENST00000413040 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.41■■□□□ 1.02
NUB1-201ENST00000413040 TOP2AP11388 1531 aaKnown RBP21.4■■□□□ 1.02
NUB1-201ENST00000413040 CCER1Q8TC90 406 aaPredicted RBP21.36■■□□□ 1.01
NUB1-201ENST00000413040 SOGA1O94964 1423 aa21.32■■□□□ 1
NUB1-201ENST00000413040 SMARCA2P51531 1590 aa21.31■■□□□ 1
NUB1-201ENST00000413040 UNC13AQ9UPW8 1703 aa21.31■■□□□ 1
NUB1-201ENST00000413040 CSRNP3Q8WYN3 585 aa21.28■■□□□ 1
NUB1-201ENST00000413040 EIF4G1Q04637 1599 aaKnown RBP21.28■■□□□ 1
NUB1-201ENST00000413040 RUSC2Q8N2Y8 1516 aa21.21■□□□□ 0.99
NUB1-201ENST00000413040 RANGAP1P46060 587 aaPredicted RBP21.21■□□□□ 0.99
NUB1-201ENST00000413040 CEP162Q5TB80 1403 aa21.2■□□□□ 0.98
NUB1-201ENST00000413040 BICRAQ9NZM4 1560 aa21.11■□□□□ 0.97
NUB1-201ENST00000413040 WRNQ14191 1432 aaPredicted RBP eCLIP21.11■□□□□ 0.97
NUB1-201ENST00000413040 TNIKQ9UKE5 1360 aa21.09■□□□□ 0.97
NUB1-201ENST00000413040 EEA1Q15075 1411 aa21.02■□□□□ 0.96
NUB1-201ENST00000413040 GOLGA3Q08378 1498 aa20.98■□□□□ 0.95
NUB1-201ENST00000413040 BAZ1BQ9UIG0 1483 aaKnown RBP20.98■□□□□ 0.95
NUB1-201ENST00000413040 HNRNPUL2Q1KMD3 747 aaKnown RBP20.97■□□□□ 0.95
NUB1-201ENST00000413040 ATAD2BQ9ULI0 1458 aa20.96■□□□□ 0.95
NUB1-201ENST00000413040 APLP2Q06481 763 aa20.94■□□□□ 0.94
NUB1-201ENST00000413040 SYNJ1O43426 1573 aa20.88■□□□□ 0.93
NUB1-201ENST00000413040 DIEXFQ68CQ4 756 aaKnown RBP20.85■□□□□ 0.93
NUB1-201ENST00000413040 CEP164Q9UPV0 1460 aa20.84■□□□□ 0.93
NUB1-201ENST00000413040 CLIP1P30622 1438 aa20.84■□□□□ 0.93
NUB1-201ENST00000413040 PEG3Q9GZU2 1588 aa20.83■□□□□ 0.92
NUB1-201ENST00000413040 SCAF1Q9H7N4 1312 aaKnown RBP20.79■□□□□ 0.92
NUB1-201ENST00000413040 RAPGEF2Q9Y4G8 1499 aa20.75■□□□□ 0.91
NUB1-201ENST00000413040 VPS8Q8N3P4 1428 aa20.66■□□□□ 0.9
NUB1-201ENST00000413040 KIF21BO75037 1637 aa20.64■□□□□ 0.89
NUB1-201ENST00000413040 NEUROD1Q13562 356 aa20.63■□□□□ 0.89
NUB1-201ENST00000413040 ZNF316A6NFI3 1004 aaPredicted RBP20.63■□□□□ 0.89
NUB1-201ENST00000413040 ACIN1Q9UKV3 1341 aaKnown RBP20.6■□□□□ 0.89
NUB1-201ENST00000413040 YTHDC1Q96MU7 727 aaKnown RBP20.58■□□□□ 0.89
NUB1-201ENST00000413040 CENPBP07199 599 aaPredicted RBP20.57■□□□□ 0.88
NUB1-201ENST00000413040 TOP2BQ02880 1626 aa20.53■□□□□ 0.88
NUB1-201ENST00000413040 ITGAEP38570 1179 aa20.52■□□□□ 0.87
NUB1-201ENST00000413040 KANK4Q5T7N3 995 aaPredicted RBP20.5■□□□□ 0.87
NUB1-201ENST00000413040 NCAPD3P42695 1498 aa20.48■□□□□ 0.87
NUB1-201ENST00000413040 GTF3C3Q9Y5Q9 886 aa20.47■□□□□ 0.87
NUB1-201ENST00000413040 KIF27Q86VH2 1401 aa20.46■□□□□ 0.87
NUB1-201ENST00000413040 CUX1P39880 1505 aa20.43■□□□□ 0.86
NUB1-201ENST00000413040 PRXQ9BXM0 1461 aa20.41■□□□□ 0.86
NUB1-201ENST00000413040 MIER1Q8N108 512 aa20.4■□□□□ 0.86
NUB1-201ENST00000413040 ATP1B4Q9UN42 357 aaPredicted RBP20.4■□□□□ 0.86
NUB1-201ENST00000413040 BIVM-ERCC5R4GMW8 1640 aa20.38■□□□□ 0.85
NUB1-201ENST00000413040 HMGXB3Q12766 1538 aa20.37■□□□□ 0.85
NUB1-201ENST00000413040 ARAP1Q96P48 1450 aa20.35■□□□□ 0.85
NUB1-201ENST00000413040 CFTRP13569 1480 aa20.34■□□□□ 0.85
NUB1-201ENST00000413040 P3H3Q8IVL6 736 aa20.34■□□□□ 0.85
NUB1-201ENST00000413040 ERICH3Q5RHP9 1530 aa20.32■□□□□ 0.84
NUB1-201ENST00000413040 CUX2O14529 1486 aa20.32■□□□□ 0.84
NUB1-201ENST00000413040 PELP1Q8IZL8 1130 aaKnown RBP20.24■□□□□ 0.83
NUB1-201ENST00000413040 CADPSQ9ULU8 1353 aa20.23■□□□□ 0.83
NUB1-201ENST00000413040 DHX57Q6P158 1386 aaKnown RBP20.22■□□□□ 0.83
NUB1-201ENST00000413040 IGF1RP08069 1367 aa20.22■□□□□ 0.83
NUB1-201ENST00000413040 ARHGAP35Q9NRY4 1499 aa20.22■□□□□ 0.83
NUB1-201ENST00000413040 CARMIL1Q5VZK9 1371 aa20.21■□□□□ 0.83
NUB1-201ENST00000413040 FAM50AQ14320 339 aaKnown RBP20.19■□□□□ 0.82
NUB1-201ENST00000413040 CCNB3Q8WWL7 1395 aa20.18■□□□□ 0.82
NUB1-201ENST00000413040 FGD5Q6ZNL6 1462 aa20.15■□□□□ 0.82
NUB1-201ENST00000413040 CLSPNQ9HAW4 1339 aa20.11■□□□□ 0.81
NUB1-201ENST00000413040 RRBP1Q9P2E9 1410 aaKnown RBP20.09■□□□□ 0.81
NUB1-201ENST00000413040 FANCD2Q9BXW9 1451 aa20.04■□□□□ 0.8
NUB1-201ENST00000413040 RAD54L2Q9Y4B4 1467 aa20.03■□□□□ 0.8
NUB1-201ENST00000413040 RAB3GAP2Q9H2M9 1393 aa20.03■□□□□ 0.8
NUB1-201ENST00000413040 CC2D2AQ9P2K1 1620 aa20.02■□□□□ 0.79
NUB1-201ENST00000413040 SIN3AQ96ST3 1273 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms