RNA–Protein interactions for RNA: ENST00000411917.1

PTPA-208, Transcript of protein phosphatase 2 phosphatase activator, humanhuman

TSL 3

Gene PTPA, Length 738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPA-208ENST00000411917 NISCHQ9Y2I1 1504 aa47.6■■■■■ 5.21
PTPA-208ENST00000411917 CCDC180Q9P1Z9 1646 aa41.97■■■■■ 4.31
PTPA-208ENST00000411917 ABCC9O60706 1549 aa39.94■■■■□ 3.98
PTPA-208ENST00000411917 ZCCHC6Q5VYS8 1495 aaKnown RBP39.88■■■■□ 3.98
PTPA-208ENST00000411917 DCAF1Q9Y4B6 1507 aa39.61■■■■□ 3.93
PTPA-208ENST00000411917 MYO15BQ96JP2 1530 aa39.49■■■■□ 3.91
PTPA-208ENST00000411917 NACADO15069 1562 aa39.25■■■■□ 3.87
PTPA-208ENST00000411917 DCAF8L2P0C7V8 631 aa39.04■■■■□ 3.84
PTPA-208ENST00000411917 RB1CC1Q8TDY2 1594 aa39.01■■■■□ 3.84
PTPA-208ENST00000411917 SCRIBQ14160 1630 aa38.14■■■■□ 3.7
PTPA-208ENST00000411917 UNC13AQ9UPW8 1703 aa37.98■■■■□ 3.67
PTPA-208ENST00000411917 SHROOM4Q9ULL8 1493 aa37.81■■■■□ 3.64
PTPA-208ENST00000411917 BICRAQ9NZM4 1560 aa37.76■■■■□ 3.63
PTPA-208ENST00000411917 PABPN1Q86U42 306 aaKnown RBP eCLIP37.41■■■■□ 3.58
PTPA-208ENST00000411917 BAZ1AQ9NRL2 1556 aaPredicted RBP36.86■■■■□ 3.49
PTPA-208ENST00000411917 CECR2Q9BXF3 1484 aa36.85■■■■□ 3.49
PTPA-208ENST00000411917 SMARCA4P51532 1647 aa36.7■■■■□ 3.47
PTPA-208ENST00000411917 EIF4G1Q04637 1599 aaKnown RBP36.69■■■■□ 3.46
PTPA-208ENST00000411917 MROH2BQ7Z745 1585 aa36.61■■■■□ 3.45
PTPA-208ENST00000411917 RSF1Q96T23 1441 aaPredicted RBP36.58■■■■□ 3.45
PTPA-208ENST00000411917 PEG3Q9GZU2 1588 aa36.48■■■■□ 3.43
PTPA-208ENST00000411917 SMARCA2P51531 1590 aa36.36■■■■□ 3.41
PTPA-208ENST00000411917 ATAD2BQ9ULI0 1458 aa36.3■■■■□ 3.4
PTPA-208ENST00000411917 CC2D2AQ9P2K1 1620 aa36.25■■■■□ 3.39
PTPA-208ENST00000411917 NCAPD3P42695 1498 aa36.22■■■■□ 3.39
PTPA-208ENST00000411917 WIZO95785 1651 aa36.19■■■■□ 3.38
PTPA-208ENST00000411917 HMGXB3Q12766 1538 aa36.13■■■■□ 3.38
PTPA-208ENST00000411917 SUPT5HO00267 1087 aaKnown RBP36.07■■■■□ 3.36
PTPA-208ENST00000411917 TOP2AP11388 1531 aaKnown RBP36.02■■■■□ 3.36
PTPA-208ENST00000411917 BAZ1BQ9UIG0 1483 aaKnown RBP36.01■■■■□ 3.36
PTPA-208ENST00000411917 DNAJC5BQ9UF47 199 aa35.8■■■■□ 3.32
PTPA-208ENST00000411917 CCDC88BA6NC98 1476 aa35.52■■■■□ 3.28
PTPA-208ENST00000411917 CFTRP13569 1480 aa35.17■■■■□ 3.22
PTPA-208ENST00000411917 CADPSQ9ULU8 1353 aa35.15■■■■□ 3.22
PTPA-208ENST00000411917 LAMC3Q9Y6N6 1575 aa35.08■■■■□ 3.21
PTPA-208ENST00000411917 PRDM2Q13029 1718 aa34.89■■■■□ 3.18
PTPA-208ENST00000411917 NESP48681 1621 aa34.83■■■■□ 3.17
PTPA-208ENST00000411917 PDS5BQ9NTI5 1447 aa34.81■■■■□ 3.16
PTPA-208ENST00000411917 FANCD2Q9BXW9 1451 aa34.69■■■■□ 3.14
PTPA-208ENST00000411917 CEP164Q9UPV0 1460 aa34.58■■■■□ 3.13
PTPA-208ENST00000411917 KIF21AQ7Z4S6 1674 aa34.46■■■■□ 3.11
PTPA-208ENST00000411917 WRNQ14191 1432 aaPredicted RBP eCLIP34.46■■■■□ 3.11
PTPA-208ENST00000411917 ABCC8Q09428 1581 aa34.43■■■■□ 3.1
PTPA-208ENST00000411917 ERCC6Q03468 1493 aa34.4■■■■□ 3.1
PTPA-208ENST00000411917 MRC2Q9UBG0 1479 aa34.36■■■■□ 3.09
PTPA-208ENST00000411917 CHIC1Q5VXU3 224 aa34.35■■■■□ 3.09
PTPA-208ENST00000411917 DNMBPQ6XZF7 1577 aa34.32■■■■□ 3.09
PTPA-208ENST00000411917 TOP2BQ02880 1626 aa34.32■■■■□ 3.08
PTPA-208ENST00000411917 CUX1P39880 1505 aa34.3■■■■□ 3.08
PTPA-208ENST00000411917 BIVM-ERCC5R4GMW8 1640 aa34.3■■■■□ 3.08
PTPA-208ENST00000411917 URB2Q14146 1524 aaKnown RBP34.27■■■■□ 3.08
PTPA-208ENST00000411917 SYNJ1O43426 1573 aa34.26■■■■□ 3.07
PTPA-208ENST00000411917 WDR62O43379 1518 aa34.25■■■■□ 3.07
PTPA-208ENST00000411917 TOPBP1Q92547 1522 aa34.25■■■■□ 3.07
PTPA-208ENST00000411917 THOC2Q8NI27 1593 aaKnown RBP34.23■■■■□ 3.07
PTPA-208ENST00000411917 TRIM41Q8WV44 630 aa34.16■■■■□ 3.06
PTPA-208ENST00000411917 FGD5Q6ZNL6 1462 aa34.03■■■■□ 3.04
PTPA-208ENST00000411917 POLA1P09884 1462 aaPredicted RBP34.02■■■■□ 3.04
PTPA-208ENST00000411917 CUX2O14529 1486 aa33.89■■■■□ 3.02
PTPA-208ENST00000411917 IFT140Q96RY7 1462 aa33.88■■■■□ 3.01
PTPA-208ENST00000411917 SOGA1O94964 1423 aa33.87■■■■□ 3.01
PTPA-208ENST00000411917 ABCA10Q8WWZ4 1543 aa33.86■■■■□ 3.01
PTPA-208ENST00000411917 TARBP1Q13395 1621 aaKnown RBP33.82■■■■□ 3
PTPA-208ENST00000411917 WDR97A6NE52 1622 aa33.79■■■■□ 3
PTPA-208ENST00000411917 EEA1Q15075 1411 aa33.78■■■■□ 3
PTPA-208ENST00000411917 RAD54L2Q9Y4B4 1467 aa33.76■■■□□ 2.99
PTPA-208ENST00000411917 KIF27Q86VH2 1401 aa33.7■■■□□ 2.98
PTPA-208ENST00000411917 ABCA5Q8WWZ7 1642 aa33.6■■■□□ 2.97
PTPA-208ENST00000411917 GAPVD1Q14C86 1478 aa33.52■■■□□ 2.96
PTPA-208ENST00000411917 TDRD9Q8NDG6 1382 aaKnown RBP33.49■■■□□ 2.95
PTPA-208ENST00000411917 ZNF608Q9ULD9 1512 aaPredicted RBP33.49■■■□□ 2.95
PTPA-208ENST00000411917 ERICH3Q5RHP9 1530 aa33.48■■■□□ 2.95
PTPA-208ENST00000411917 RUSC2Q8N2Y8 1516 aa33.48■■■□□ 2.95
PTPA-208ENST00000411917 EIF4G3O43432 1585 aaKnown RBP33.45■■■□□ 2.95
PTPA-208ENST00000411917 IGF1RP08069 1367 aa33.43■■■□□ 2.94
PTPA-208ENST00000411917 GRIN2BQ13224 1484 aa33.43■■■□□ 2.94
PTPA-208ENST00000411917 AQRO60306 1485 aaKnown RBP eCLIP33.42■■■□□ 2.942e-7■■■■□ 24.2
PTPA-208ENST00000411917 CSRNP3Q8WYN3 585 aa33.41■■■□□ 2.94
PTPA-208ENST00000411917 CUL7Q14999 1698 aa33.33■■■□□ 2.93
PTPA-208ENST00000411917 PBRM1Q86U86 1689 aa33.33■■■□□ 2.93
PTPA-208ENST00000411917 PRXQ9BXM0 1461 aa33.31■■■□□ 2.92
PTPA-208ENST00000411917 MAGI1Q96QZ7 1491 aaPredicted RBP33.29■■■□□ 2.92
PTPA-208ENST00000411917 KIF21BO75037 1637 aa33.25■■■□□ 2.91
PTPA-208ENST00000411917 FAM9AQ8IZU1 332 aaPredicted RBP33.23■■■□□ 2.91
PTPA-208ENST00000411917 CARMIL1Q5VZK9 1371 aa33.22■■■□□ 2.91
PTPA-208ENST00000411917 FHAD1B1AJZ9 1412 aa33.22■■■□□ 2.91
PTPA-208ENST00000411917 ADAMTS12P58397 1594 aa33.2■■■□□ 2.91
PTPA-208ENST00000411917 SNAPC4Q5SXM2 1469 aa33.18■■■□□ 2.9
PTPA-208ENST00000411917 RAPGEF2Q9Y4G8 1499 aa33.16■■■□□ 2.9
PTPA-208ENST00000411917 SYNJ2O15056 1496 aa33.11■■■□□ 2.89
PTPA-208ENST00000411917 GOLGA3Q08378 1498 aa33.11■■■□□ 2.89
PTPA-208ENST00000411917 GRIN2AQ12879 1464 aa32.98■■■□□ 2.87
PTPA-208ENST00000411917 CHMP7Q8WUX9 453 aaPredicted RBP32.9■■■□□ 2.86
PTPA-208ENST00000411917 TNIKQ9UKE5 1360 aa32.89■■■□□ 2.86
PTPA-208ENST00000411917 NUP160Q12769 1436 aa32.86■■■□□ 2.85
PTPA-208ENST00000411917 LOC105371045A0A1W2PR82 267 aa32.78■■■□□ 2.84
PTPA-208ENST00000411917 CHD1O14646 1710 aa32.77■■■□□ 2.84
PTPA-208ENST00000411917 UBTFP17480 764 aaKnown RBP32.76■■■□□ 2.83
PTPA-208ENST00000411917 KIAA0586Q9BVV6 1533 aa32.76■■■□□ 2.83
PTPA-208ENST00000411917 CTTNBP2Q8WZ74 1663 aa32.72■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms