RNA–Protein interactions for RNA: ENST00000409836.3

GYPC-203, Transcript of glycophorin C (Gerbich blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GYPC, Length 932 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GYPC-203ENST00000409836 NISCHQ9Y2I1 1504 aa34.32■■■■□ 3.08
GYPC-203ENST00000409836 CCDC180Q9P1Z9 1646 aa30.64■■■□□ 2.5
GYPC-203ENST00000409836 ABCC9O60706 1549 aa29.55■■■□□ 2.32
GYPC-203ENST00000409836 NACADO15069 1562 aa28.68■■■□□ 2.18
GYPC-203ENST00000409836 ZCCHC6Q5VYS8 1495 aaKnown RBP28.68■■■□□ 2.18
GYPC-203ENST00000409836 MYO15BQ96JP2 1530 aa28.68■■■□□ 2.18
GYPC-203ENST00000409836 RB1CC1Q8TDY2 1594 aa28.65■■■□□ 2.18
GYPC-203ENST00000409836 DCAF1Q9Y4B6 1507 aa28.56■■■□□ 2.16
GYPC-203ENST00000409836 DCAF8L2P0C7V8 631 aa28.12■■■□□ 2.09
GYPC-203ENST00000409836 UNC13AQ9UPW8 1703 aa28.08■■■□□ 2.09
GYPC-203ENST00000409836 BICRAQ9NZM4 1560 aa27.82■■■□□ 2.04
GYPC-203ENST00000409836 SCRIBQ14160 1630 aa27.73■■■□□ 2.03
GYPC-203ENST00000409836 SHROOM4Q9ULL8 1493 aa27.69■■■□□ 2.02
GYPC-203ENST00000409836 PABPN1Q86U42 306 aaKnown RBP eCLIP27.47■■□□□ 1.99
GYPC-203ENST00000409836 EIF4G1Q04637 1599 aaKnown RBP27.03■■□□□ 1.92
GYPC-203ENST00000409836 DNAJC5BQ9UF47 199 aa26.95■■□□□ 1.9
GYPC-203ENST00000409836 CC2D2AQ9P2K1 1620 aa26.87■■□□□ 1.89
GYPC-203ENST00000409836 SMARCA4P51532 1647 aa26.64■■□□□ 1.85
GYPC-203ENST00000409836 CECR2Q9BXF3 1484 aa26.62■■□□□ 1.85
GYPC-203ENST00000409836 BAZ1AQ9NRL2 1556 aaPredicted RBP26.62■■□□□ 1.85
GYPC-203ENST00000409836 PEG3Q9GZU2 1588 aa26.5■■□□□ 1.83
GYPC-203ENST00000409836 SMARCA2P51531 1590 aa26.45■■□□□ 1.82
GYPC-203ENST00000409836 NCAPD3P42695 1498 aa26.42■■□□□ 1.82
GYPC-203ENST00000409836 ATAD2BQ9ULI0 1458 aa26.41■■□□□ 1.82
GYPC-203ENST00000409836 MROH2BQ7Z745 1585 aa26.4■■□□□ 1.82
GYPC-203ENST00000409836 HMGXB3Q12766 1538 aa26.39■■□□□ 1.82
GYPC-203ENST00000409836 BAZ1BQ9UIG0 1483 aaKnown RBP26.17■■□□□ 1.78
GYPC-203ENST00000409836 RSF1Q96T23 1441 aaPredicted RBP26.12■■□□□ 1.77
GYPC-203ENST00000409836 WIZO95785 1651 aa26.12■■□□□ 1.77
GYPC-203ENST00000409836 TOP2AP11388 1531 aaKnown RBP25.93■■□□□ 1.74
GYPC-203ENST00000409836 LAMC3Q9Y6N6 1575 aa25.75■■□□□ 1.71
GYPC-203ENST00000409836 NESP48681 1621 aa25.63■■□□□ 1.69
GYPC-203ENST00000409836 CADPSQ9ULU8 1353 aa25.56■■□□□ 1.68
GYPC-203ENST00000409836 CFTRP13569 1480 aa25.53■■□□□ 1.68
GYPC-203ENST00000409836 CCDC88BA6NC98 1476 aa25.5■■□□□ 1.67
GYPC-203ENST00000409836 PRDM2Q13029 1718 aa25.5■■□□□ 1.67
GYPC-203ENST00000409836 ERCC6Q03468 1493 aa25.46■■□□□ 1.67
GYPC-203ENST00000409836 KIF21AQ7Z4S6 1674 aa25.45■■□□□ 1.67
GYPC-203ENST00000409836 PDS5BQ9NTI5 1447 aa25.45■■□□□ 1.66
GYPC-203ENST00000409836 THOC2Q8NI27 1593 aaKnown RBP25.42■■□□□ 1.66
GYPC-203ENST00000409836 CUX2O14529 1486 aa25.34■■□□□ 1.65
GYPC-203ENST00000409836 FANCD2Q9BXW9 1451 aa25.29■■□□□ 1.64
GYPC-203ENST00000409836 CEP164Q9UPV0 1460 aa25.27■■□□□ 1.64
GYPC-203ENST00000409836 WDR62O43379 1518 aa25.23■■□□□ 1.63
GYPC-203ENST00000409836 MRC2Q9UBG0 1479 aa25.23■■□□□ 1.63
GYPC-203ENST00000409836 SUPT5HO00267 1087 aaKnown RBP25.19■■□□□ 1.62
GYPC-203ENST00000409836 URB2Q14146 1524 aaKnown RBP25.07■■□□□ 1.6
GYPC-203ENST00000409836 ABCC8Q09428 1581 aa24.97■■□□□ 1.59
GYPC-203ENST00000409836 DNMBPQ6XZF7 1577 aa24.97■■□□□ 1.59
GYPC-203ENST00000409836 TOPBP1Q92547 1522 aa24.93■■□□□ 1.58
GYPC-203ENST00000409836 CUX1P39880 1505 aa24.78■■□□□ 1.56
GYPC-203ENST00000409836 IFT140Q96RY7 1462 aa24.75■■□□□ 1.55
GYPC-203ENST00000409836 TARBP1Q13395 1621 aaKnown RBP24.73■■□□□ 1.55
GYPC-203ENST00000409836 POLA1P09884 1462 aaPredicted RBP24.73■■□□□ 1.55
GYPC-203ENST00000409836 BIVM-ERCC5R4GMW8 1640 aa24.69■■□□□ 1.54
GYPC-203ENST00000409836 TOP2BQ02880 1626 aa24.66■■□□□ 1.54
GYPC-203ENST00000409836 FGD5Q6ZNL6 1462 aa24.65■■□□□ 1.54
GYPC-203ENST00000409836 WDR97A6NE52 1622 aa24.65■■□□□ 1.54
GYPC-203ENST00000409836 WRNQ14191 1432 aaPredicted RBP eCLIP24.61■■□□□ 1.53
GYPC-203ENST00000409836 SYNJ1O43426 1573 aa24.6■■□□□ 1.53
GYPC-203ENST00000409836 EIF4G3O43432 1585 aaKnown RBP24.59■■□□□ 1.53
GYPC-203ENST00000409836 ZNF608Q9ULD9 1512 aaPredicted RBP24.56■■□□□ 1.52
GYPC-203ENST00000409836 SOGA1O94964 1423 aa24.52■■□□□ 1.52
GYPC-203ENST00000409836 RAD54L2Q9Y4B4 1467 aa24.51■■□□□ 1.51
GYPC-203ENST00000409836 ABCA10Q8WWZ4 1543 aa24.49■■□□□ 1.51
GYPC-203ENST00000409836 ABCA5Q8WWZ7 1642 aa24.45■■□□□ 1.5
GYPC-203ENST00000409836 AQRO60306 1485 aaKnown RBP eCLIP24.38■■□□□ 1.492e-7■■■■□ 23.9
GYPC-203ENST00000409836 PBRM1Q86U86 1689 aa24.35■■□□□ 1.49
GYPC-203ENST00000409836 TDRD9Q8NDG6 1382 aaKnown RBP24.31■■□□□ 1.48
GYPC-203ENST00000409836 GRIN2BQ13224 1484 aa24.31■■□□□ 1.48
GYPC-203ENST00000409836 MAGI1Q96QZ7 1491 aaPredicted RBP24.3■■□□□ 1.48
GYPC-203ENST00000409836 GAPVD1Q14C86 1478 aa24.29■■□□□ 1.48
GYPC-203ENST00000409836 DNAJC5Q9H3Z4 198 aa24.25■■□□□ 1.47
GYPC-203ENST00000409836 CHD1O14646 1710 aa24.24■■□□□ 1.47
GYPC-203ENST00000409836 SNAPC4Q5SXM2 1469 aa24.23■■□□□ 1.47
GYPC-203ENST00000409836 ERICH3Q5RHP9 1530 aa24.22■■□□□ 1.47
GYPC-203ENST00000409836 ADAMTS12P58397 1594 aa24.17■■□□□ 1.46
GYPC-203ENST00000409836 SYNJ2O15056 1496 aa24.17■■□□□ 1.46
GYPC-203ENST00000409836 KIF27Q86VH2 1401 aa24.07■■□□□ 1.44
GYPC-203ENST00000409836 OSCARQ8IYS5 282 aa24.06■■□□□ 1.44
GYPC-203ENST00000409836 CUL7Q14999 1698 aa24.05■■□□□ 1.44
GYPC-203ENST00000409836 CLASP1Q7Z460 1538 aa24.05■■□□□ 1.44
GYPC-203ENST00000409836 FHAD1B1AJZ9 1412 aa24.04■■□□□ 1.44
GYPC-203ENST00000409836 GRIN2AQ12879 1464 aa24.02■■□□□ 1.44
GYPC-203ENST00000409836 NUP160Q12769 1436 aa23.95■■□□□ 1.42
GYPC-203ENST00000409836 IGF1RP08069 1367 aa23.93■■□□□ 1.42
GYPC-203ENST00000409836 CEP170Q5SW79 1584 aa23.91■■□□□ 1.42
GYPC-203ENST00000409836 CHMP7Q8WUX9 453 aaPredicted RBP23.91■■□□□ 1.42
GYPC-203ENST00000409836 TRIM41Q8WV44 630 aa23.86■■□□□ 1.41
GYPC-203ENST00000409836 ARHGEF11O15085 1522 aa23.85■■□□□ 1.41
GYPC-203ENST00000409836 FBLN2P98095 1184 aa23.85■■□□□ 1.41
GYPC-203ENST00000409836 RIMBP3CA6NJZ7 1639 aa23.84■■□□□ 1.41
GYPC-203ENST00000409836 RIMBP3BA6NNM3 1639 aa23.84■■□□□ 1.41
GYPC-203ENST00000409836 SHROOM2Q13796 1616 aa23.84■■□□□ 1.41
GYPC-203ENST00000409836 RIMBP3Q9UFD9 1639 aa23.84■■□□□ 1.41
GYPC-203ENST00000409836 RUSC2Q8N2Y8 1516 aa23.84■■□□□ 1.41
GYPC-203ENST00000409836 CARMIL1Q5VZK9 1371 aa23.77■■□□□ 1.4
GYPC-203ENST00000409836 EEA1Q15075 1411 aa23.76■■□□□ 1.39
GYPC-203ENST00000409836 PRXQ9BXM0 1461 aa23.72■■□□□ 1.39
GYPC-203ENST00000409836 RAPGEF2Q9Y4G8 1499 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms