RNA–Protein interactions for RNA: ENST00000409823.7

PMS1-204, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 5 BASIC

Gene PMS1, Length 2,795 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-204ENST00000409823 NISCHQ9Y2I1 1504 aa29.26■■■□□ 2.28
PMS1-204ENST00000409823 CCDC180Q9P1Z9 1646 aa25.58■■□□□ 1.69
PMS1-204ENST00000409823 ABCC9O60706 1549 aa24.81■■□□□ 1.56
PMS1-204ENST00000409823 DCAF8L2P0C7V8 631 aa24.58■■□□□ 1.52
PMS1-204ENST00000409823 ZCCHC6Q5VYS8 1495 aaKnown RBP24.48■■□□□ 1.51
PMS1-204ENST00000409823 DCAF1Q9Y4B6 1507 aa24.08■■□□□ 1.45
PMS1-204ENST00000409823 NACADO15069 1562 aa23.98■■□□□ 1.43
PMS1-204ENST00000409823 MYO15BQ96JP2 1530 aa23.93■■□□□ 1.42
PMS1-204ENST00000409823 RB1CC1Q8TDY2 1594 aa23.9■■□□□ 1.42
PMS1-204ENST00000409823 SHROOM4Q9ULL8 1493 aa23.81■■□□□ 1.4
PMS1-204ENST00000409823 SCRIBQ14160 1630 aa23.66■■□□□ 1.38
PMS1-204ENST00000409823 PABPN1Q86U42 306 aaKnown RBP eCLIP23.4■■□□□ 1.34
PMS1-204ENST00000409823 UNC13AQ9UPW8 1703 aa23.4■■□□□ 1.34
PMS1-204ENST00000409823 BICRAQ9NZM4 1560 aa23.22■■□□□ 1.31
PMS1-204ENST00000409823 CECR2Q9BXF3 1484 aa22.86■■□□□ 1.25
PMS1-204ENST00000409823 SUPT5HO00267 1087 aaKnown RBP22.71■■□□□ 1.23
PMS1-204ENST00000409823 MROH2BQ7Z745 1585 aa22.64■■□□□ 1.22
PMS1-204ENST00000409823 BAZ1AQ9NRL2 1556 aaPredicted RBP22.6■■□□□ 1.21
PMS1-204ENST00000409823 RSF1Q96T23 1441 aaPredicted RBP22.59■■□□□ 1.21
PMS1-204ENST00000409823 EIF4G1Q04637 1599 aaKnown RBP22.57■■□□□ 1.2
PMS1-204ENST00000409823 SMARCA4P51532 1647 aa22.57■■□□□ 1.2
PMS1-204ENST00000409823 WIZO95785 1651 aa22.43■■□□□ 1.18
PMS1-204ENST00000409823 CC2D2AQ9P2K1 1620 aa22.35■■□□□ 1.17
PMS1-204ENST00000409823 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
PMS1-204ENST00000409823 DNAJC5BQ9UF47 199 aa22.33■■□□□ 1.16
PMS1-204ENST00000409823 SMARCA2P51531 1590 aa22.25■■□□□ 1.15
PMS1-204ENST00000409823 PEG3Q9GZU2 1588 aa22.24■■□□□ 1.15
PMS1-204ENST00000409823 BAZ1BQ9UIG0 1483 aaKnown RBP22.2■■□□□ 1.14
PMS1-204ENST00000409823 NCAPD3P42695 1498 aa22.18■■□□□ 1.14
PMS1-204ENST00000409823 TOP2AP11388 1531 aaKnown RBP22.12■■□□□ 1.13
PMS1-204ENST00000409823 HMGXB3Q12766 1538 aa22.06■■□□□ 1.12
PMS1-204ENST00000409823 CCDC88BA6NC98 1476 aa21.96■■□□□ 1.11
PMS1-204ENST00000409823 NESP48681 1621 aa21.65■■□□□ 1.06
PMS1-204ENST00000409823 CADPSQ9ULU8 1353 aa21.63■■□□□ 1.05
PMS1-204ENST00000409823 CFTRP13569 1480 aa21.59■■□□□ 1.05
PMS1-204ENST00000409823 LAMC3Q9Y6N6 1575 aa21.46■■□□□ 1.03
PMS1-204ENST00000409823 CHIC1Q5VXU3 224 aa21.42■■□□□ 1.02
PMS1-204ENST00000409823 ABCC8Q09428 1581 aa21.41■■□□□ 1.02
PMS1-204ENST00000409823 FANCD2Q9BXW9 1451 aa21.4■■□□□ 1.02
PMS1-204ENST00000409823 PDS5BQ9NTI5 1447 aa21.37■■□□□ 1.01
PMS1-204ENST00000409823 PRDM2Q13029 1718 aa21.32■■□□□ 1
PMS1-204ENST00000409823 TRIM41Q8WV44 630 aa21.31■■□□□ 1
PMS1-204ENST00000409823 ERCC6Q03468 1493 aa21.29■■□□□ 1
PMS1-204ENST00000409823 CEP164Q9UPV0 1460 aa21.29■■□□□ 1
PMS1-204ENST00000409823 KIF21AQ7Z4S6 1674 aa21.29■■□□□ 1
PMS1-204ENST00000409823 WRNQ14191 1432 aaPredicted RBP eCLIP21.28■■□□□ 1
PMS1-204ENST00000409823 SYNJ1O43426 1573 aa21.2■□□□□ 0.98
PMS1-204ENST00000409823 CUX1P39880 1505 aa21.19■□□□□ 0.98
PMS1-204ENST00000409823 URB2Q14146 1524 aaKnown RBP21.15■□□□□ 0.98
PMS1-204ENST00000409823 MRC2Q9UBG0 1479 aa21.11■□□□□ 0.97
PMS1-204ENST00000409823 TOPBP1Q92547 1522 aa21.1■□□□□ 0.97
PMS1-204ENST00000409823 TOP2BQ02880 1626 aa21.09■□□□□ 0.97
PMS1-204ENST00000409823 DNMBPQ6XZF7 1577 aa21.06■□□□□ 0.96
PMS1-204ENST00000409823 BIVM-ERCC5R4GMW8 1640 aa21.03■□□□□ 0.96
PMS1-204ENST00000409823 FGD5Q6ZNL6 1462 aa21.03■□□□□ 0.96
PMS1-204ENST00000409823 THOC2Q8NI27 1593 aaKnown RBP21.02■□□□□ 0.96
PMS1-204ENST00000409823 FAM9AQ8IZU1 332 aaPredicted RBP21.02■□□□□ 0.95
PMS1-204ENST00000409823 POLA1P09884 1462 aaPredicted RBP20.99■□□□□ 0.95
PMS1-204ENST00000409823 WDR62O43379 1518 aa20.98■□□□□ 0.95
PMS1-204ENST00000409823 RAD54L2Q9Y4B4 1467 aa20.97■□□□□ 0.95
PMS1-204ENST00000409823 SOGA1O94964 1423 aa20.94■□□□□ 0.94
PMS1-204ENST00000409823 RUSC2Q8N2Y8 1516 aa20.9■□□□□ 0.94
PMS1-204ENST00000409823 CUX2O14529 1486 aa20.89■□□□□ 0.93
PMS1-204ENST00000409823 EHMT2Q96KQ7 1210 aa20.84■□□□□ 0.93
PMS1-204ENST00000409823 TDRD9Q8NDG6 1382 aaKnown RBP20.83■□□□□ 0.93
PMS1-204ENST00000409823 TARBP1Q13395 1621 aaKnown RBP20.79■□□□□ 0.92
PMS1-204ENST00000409823 ABCA10Q8WWZ4 1543 aa20.78■□□□□ 0.92
PMS1-204ENST00000409823 ZNF608Q9ULD9 1512 aaPredicted RBP20.77■□□□□ 0.92
PMS1-204ENST00000409823 IFT140Q96RY7 1462 aa20.77■□□□□ 0.92
PMS1-204ENST00000409823 KIF27Q86VH2 1401 aa20.76■□□□□ 0.91
PMS1-204ENST00000409823 AQRO60306 1485 aaKnown RBP eCLIP20.76■□□□□ 0.911e-9■■■■□ 22.4
PMS1-204ENST00000409823 CSRNP3Q8WYN3 585 aa20.72■□□□□ 0.91
PMS1-204ENST00000409823 WDR97A6NE52 1622 aa20.69■□□□□ 0.9
PMS1-204ENST00000409823 LOC105371045A0A1W2PR82 267 aa20.69■□□□□ 0.9
PMS1-204ENST00000409823 GAPVD1Q14C86 1478 aa20.68■□□□□ 0.9
PMS1-204ENST00000409823 IGF1RP08069 1367 aa20.65■□□□□ 0.9
PMS1-204ENST00000409823 EEA1Q15075 1411 aa20.65■□□□□ 0.9
PMS1-204ENST00000409823 ABCA5Q8WWZ7 1642 aa20.62■□□□□ 0.89
PMS1-204ENST00000409823 EIF4G3O43432 1585 aaKnown RBP20.62■□□□□ 0.89
PMS1-204ENST00000409823 GRIN2BQ13224 1484 aa20.55■□□□□ 0.88
PMS1-204ENST00000409823 CARMIL1Q5VZK9 1371 aa20.54■□□□□ 0.88
PMS1-204ENST00000409823 PBRM1Q86U86 1689 aa20.52■□□□□ 0.87
PMS1-204ENST00000409823 FBLN2P98095 1184 aa20.51■□□□□ 0.87
PMS1-204ENST00000409823 RAPGEF2Q9Y4G8 1499 aa20.51■□□□□ 0.87
PMS1-204ENST00000409823 ERICH3Q5RHP9 1530 aa20.51■□□□□ 0.87
PMS1-204ENST00000409823 SNAPC4Q5SXM2 1469 aa20.51■□□□□ 0.87
PMS1-204ENST00000409823 PRXQ9BXM0 1461 aa20.49■□□□□ 0.87
PMS1-204ENST00000409823 UBTFP17480 764 aaKnown RBP20.49■□□□□ 0.87
PMS1-204ENST00000409823 CHMP7Q8WUX9 453 aaPredicted RBP20.43■□□□□ 0.86
PMS1-204ENST00000409823 RANGAP1P46060 587 aaPredicted RBP20.42■□□□□ 0.86
PMS1-204ENST00000409823 GOLGA3Q08378 1498 aa20.42■□□□□ 0.86
PMS1-204ENST00000409823 FHAD1B1AJZ9 1412 aa20.42■□□□□ 0.86
PMS1-204ENST00000409823 KIF21BO75037 1637 aa20.41■□□□□ 0.86
PMS1-204ENST00000409823 CUL7Q14999 1698 aa20.41■□□□□ 0.86
PMS1-204ENST00000409823 ADAMTS12P58397 1594 aa20.4■□□□□ 0.86
PMS1-204ENST00000409823 MAGI1Q96QZ7 1491 aaPredicted RBP20.39■□□□□ 0.86
PMS1-204ENST00000409823 SYNJ2O15056 1496 aa20.35■□□□□ 0.85
PMS1-204ENST00000409823 GRIN2AQ12879 1464 aa20.31■□□□□ 0.84
PMS1-204ENST00000409823 TNIKQ9UKE5 1360 aa20.27■□□□□ 0.84
PMS1-204ENST00000409823 CHD1O14646 1710 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms