RNA–Protein interactions for RNA: ENST00000409754.5

LIMS2-206, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 1 (best) BASIC

Gene LIMS2, Length 1,620 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-206ENST00000409754 NISCHQ9Y2I1 1504 aa32.37■■■□□ 2.77
LIMS2-206ENST00000409754 CCDC180Q9P1Z9 1646 aa28.69■■■□□ 2.18
LIMS2-206ENST00000409754 ABCC9O60706 1549 aa27.82■■■□□ 2.04
LIMS2-206ENST00000409754 ZCCHC6Q5VYS8 1495 aaKnown RBP27.06■■□□□ 1.92
LIMS2-206ENST00000409754 NACADO15069 1562 aa26.85■■□□□ 1.89
LIMS2-206ENST00000409754 RB1CC1Q8TDY2 1594 aa26.82■■□□□ 1.88
LIMS2-206ENST00000409754 MYO15BQ96JP2 1530 aa26.78■■□□□ 1.88
LIMS2-206ENST00000409754 DCAF1Q9Y4B6 1507 aa26.78■■□□□ 1.88
LIMS2-206ENST00000409754 DCAF8L2P0C7V8 631 aa26.73■■□□□ 1.87
LIMS2-206ENST00000409754 UNC13AQ9UPW8 1703 aa26.41■■□□□ 1.82
LIMS2-206ENST00000409754 SCRIBQ14160 1630 aa26.22■■□□□ 1.79
LIMS2-206ENST00000409754 BICRAQ9NZM4 1560 aa26.17■■□□□ 1.78
LIMS2-206ENST00000409754 PABPN1Q86U42 306 aaKnown RBP eCLIP25.99■■□□□ 1.75
LIMS2-206ENST00000409754 SHROOM4Q9ULL8 1493 aa25.79■■□□□ 1.72
LIMS2-206ENST00000409754 DNAJC5BQ9UF47 199 aa25.38■■□□□ 1.65
LIMS2-206ENST00000409754 EIF4G1Q04637 1599 aaKnown RBP25.37■■□□□ 1.65
LIMS2-206ENST00000409754 CECR2Q9BXF3 1484 aa25.25■■□□□ 1.63
LIMS2-206ENST00000409754 CC2D2AQ9P2K1 1620 aa25.21■■□□□ 1.63
LIMS2-206ENST00000409754 SMARCA4P51532 1647 aa25.1■■□□□ 1.61
LIMS2-206ENST00000409754 BAZ1AQ9NRL2 1556 aaPredicted RBP25.03■■□□□ 1.6
LIMS2-206ENST00000409754 MROH2BQ7Z745 1585 aa25.01■■□□□ 1.59
LIMS2-206ENST00000409754 SUPT5HO00267 1087 aaKnown RBP24.9■■□□□ 1.58
LIMS2-206ENST00000409754 ATAD2BQ9ULI0 1458 aa24.87■■□□□ 1.57
LIMS2-206ENST00000409754 PEG3Q9GZU2 1588 aa24.86■■□□□ 1.57
LIMS2-206ENST00000409754 SMARCA2P51531 1590 aa24.79■■□□□ 1.56
LIMS2-206ENST00000409754 NCAPD3P42695 1498 aa24.79■■□□□ 1.56
LIMS2-206ENST00000409754 RSF1Q96T23 1441 aaPredicted RBP24.76■■□□□ 1.55
LIMS2-206ENST00000409754 WIZO95785 1651 aa24.76■■□□□ 1.55
LIMS2-206ENST00000409754 HMGXB3Q12766 1538 aa24.72■■□□□ 1.55
LIMS2-206ENST00000409754 BAZ1BQ9UIG0 1483 aaKnown RBP24.63■■□□□ 1.53
LIMS2-206ENST00000409754 TOP2AP11388 1531 aaKnown RBP24.46■■□□□ 1.51
LIMS2-206ENST00000409754 NESP48681 1621 aa24.21■■□□□ 1.47
LIMS2-206ENST00000409754 CCDC88BA6NC98 1476 aa24.16■■□□□ 1.46
LIMS2-206ENST00000409754 LAMC3Q9Y6N6 1575 aa24.09■■□□□ 1.45
LIMS2-206ENST00000409754 CADPSQ9ULU8 1353 aa24.04■■□□□ 1.44
LIMS2-206ENST00000409754 CFTRP13569 1480 aa24■■□□□ 1.43
LIMS2-206ENST00000409754 KIF21AQ7Z4S6 1674 aa23.96■■□□□ 1.43
LIMS2-206ENST00000409754 CHIC1Q5VXU3 224 aa23.95■■□□□ 1.43
LIMS2-206ENST00000409754 PRDM2Q13029 1718 aa23.91■■□□□ 1.42
LIMS2-206ENST00000409754 ERCC6Q03468 1493 aa23.85■■□□□ 1.41
LIMS2-206ENST00000409754 PDS5BQ9NTI5 1447 aa23.83■■□□□ 1.4
LIMS2-206ENST00000409754 THOC2Q8NI27 1593 aaKnown RBP23.83■■□□□ 1.4
LIMS2-206ENST00000409754 FANCD2Q9BXW9 1451 aa23.8■■□□□ 1.4
LIMS2-206ENST00000409754 CEP164Q9UPV0 1460 aa23.72■■□□□ 1.39
LIMS2-206ENST00000409754 MRC2Q9UBG0 1479 aa23.66■■□□□ 1.38
LIMS2-206ENST00000409754 WDR62O43379 1518 aa23.63■■□□□ 1.37
LIMS2-206ENST00000409754 URB2Q14146 1524 aaKnown RBP23.63■■□□□ 1.37
LIMS2-206ENST00000409754 CUX2O14529 1486 aa23.55■■□□□ 1.36
LIMS2-206ENST00000409754 TOPBP1Q92547 1522 aa23.48■■□□□ 1.35
LIMS2-206ENST00000409754 DNMBPQ6XZF7 1577 aa23.46■■□□□ 1.35
LIMS2-206ENST00000409754 CUX1P39880 1505 aa23.45■■□□□ 1.34
LIMS2-206ENST00000409754 TRIM41Q8WV44 630 aa23.43■■□□□ 1.34
LIMS2-206ENST00000409754 ABCC8Q09428 1581 aa23.41■■□□□ 1.34
LIMS2-206ENST00000409754 SYNJ1O43426 1573 aa23.34■■□□□ 1.33
LIMS2-206ENST00000409754 POLA1P09884 1462 aaPredicted RBP23.31■■□□□ 1.32
LIMS2-206ENST00000409754 BIVM-ERCC5R4GMW8 1640 aa23.3■■□□□ 1.32
LIMS2-206ENST00000409754 FGD5Q6ZNL6 1462 aa23.28■■□□□ 1.32
LIMS2-206ENST00000409754 WRNQ14191 1432 aaPredicted RBP eCLIP23.27■■□□□ 1.32
LIMS2-206ENST00000409754 TARBP1Q13395 1621 aaKnown RBP23.27■■□□□ 1.32
LIMS2-206ENST00000409754 TOP2BQ02880 1626 aa23.26■■□□□ 1.31
LIMS2-206ENST00000409754 IFT140Q96RY7 1462 aa23.21■■□□□ 1.31
LIMS2-206ENST00000409754 RAD54L2Q9Y4B4 1467 aa23.21■■□□□ 1.31
LIMS2-206ENST00000409754 ZNF608Q9ULD9 1512 aaPredicted RBP23.2■■□□□ 1.3
LIMS2-206ENST00000409754 WDR97A6NE52 1622 aa23.18■■□□□ 1.3
LIMS2-206ENST00000409754 SOGA1O94964 1423 aa23.12■■□□□ 1.29
LIMS2-206ENST00000409754 EIF4G3O43432 1585 aaKnown RBP23.11■■□□□ 1.29
LIMS2-206ENST00000409754 ABCA10Q8WWZ4 1543 aa23.05■■□□□ 1.28
LIMS2-206ENST00000409754 AQRO60306 1485 aaKnown RBP eCLIP23.03■■□□□ 1.28
LIMS2-206ENST00000409754 LOC105371045A0A1W2PR82 267 aa23.01■■□□□ 1.27
LIMS2-206ENST00000409754 ABCA5Q8WWZ7 1642 aa23.01■■□□□ 1.27
LIMS2-206ENST00000409754 TDRD9Q8NDG6 1382 aaKnown RBP23.01■■□□□ 1.27
LIMS2-206ENST00000409754 FAM9AQ8IZU1 332 aaPredicted RBP22.97■■□□□ 1.27
LIMS2-206ENST00000409754 PBRM1Q86U86 1689 aa22.92■■□□□ 1.26
LIMS2-206ENST00000409754 GAPVD1Q14C86 1478 aa22.88■■□□□ 1.25
LIMS2-206ENST00000409754 EEA1Q15075 1411 aa22.87■■□□□ 1.25
LIMS2-206ENST00000409754 GRIN2BQ13224 1484 aa22.84■■□□□ 1.25
LIMS2-206ENST00000409754 SNAPC4Q5SXM2 1469 aa22.84■■□□□ 1.25
LIMS2-206ENST00000409754 CHD1O14646 1710 aa22.79■■□□□ 1.24
LIMS2-206ENST00000409754 MAGI1Q96QZ7 1491 aaPredicted RBP22.76■■□□□ 1.23
LIMS2-206ENST00000409754 ADAMTS12P58397 1594 aa22.76■■□□□ 1.23
LIMS2-206ENST00000409754 ERICH3Q5RHP9 1530 aa22.76■■□□□ 1.23
LIMS2-206ENST00000409754 RUSC2Q8N2Y8 1516 aa22.76■■□□□ 1.23
LIMS2-206ENST00000409754 KIF27Q86VH2 1401 aa22.72■■□□□ 1.23
LIMS2-206ENST00000409754 CSRNP3Q8WYN3 585 aa22.71■■□□□ 1.23
LIMS2-206ENST00000409754 SYNJ2O15056 1496 aa22.68■■□□□ 1.22
LIMS2-206ENST00000409754 IGF1RP08069 1367 aa22.66■■□□□ 1.22
LIMS2-206ENST00000409754 FHAD1B1AJZ9 1412 aa22.61■■□□□ 1.21
LIMS2-206ENST00000409754 EHMT2Q96KQ7 1210 aa22.6■■□□□ 1.21
LIMS2-206ENST00000409754 CUL7Q14999 1698 aa22.6■■□□□ 1.21
LIMS2-206ENST00000409754 GRIN2AQ12879 1464 aa22.59■■□□□ 1.21
LIMS2-206ENST00000409754 FBLN2P98095 1184 aa22.55■■□□□ 1.2
LIMS2-206ENST00000409754 CLASP1Q7Z460 1538 aa22.55■■□□□ 1.2
LIMS2-206ENST00000409754 GOLGA3Q08378 1498 aa22.54■■□□□ 1.2
LIMS2-206ENST00000409754 KIF21BO75037 1637 aa22.54■■□□□ 1.2
LIMS2-206ENST00000409754 CEP170Q5SW79 1584 aa22.54■■□□□ 1.2
LIMS2-206ENST00000409754 DNAJC5Q9H3Z4 198 aa22.53■■□□□ 1.2
LIMS2-206ENST00000409754 OSCARQ8IYS5 282 aa22.52■■□□□ 1.2
LIMS2-206ENST00000409754 CHMP7Q8WUX9 453 aaPredicted RBP22.52■■□□□ 1.2
LIMS2-206ENST00000409754 TNIKQ9UKE5 1360 aa22.51■■□□□ 1.19
LIMS2-206ENST00000409754 NUP160Q12769 1436 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms