RNA–Protein interactions for RNA: ENST00000409472.5

SCAMP4-202, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 2 BASIC

Gene SCAMP4, Length 2,394 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-202ENST00000409472 NISCHQ9Y2I1 1504 aa32.87■■■□□ 2.85
SCAMP4-202ENST00000409472 CCDC180Q9P1Z9 1646 aa28.2■■■□□ 2.11
SCAMP4-202ENST00000409472 ZCCHC6Q5VYS8 1495 aaKnown RBP27.75■■■□□ 2.03
SCAMP4-202ENST00000409472 SHROOM4Q9ULL8 1493 aa27.67■■■□□ 2.02
SCAMP4-202ENST00000409472 DCAF8L2P0C7V8 631 aa27.21■■□□□ 1.95
SCAMP4-202ENST00000409472 DCAF1Q9Y4B6 1507 aa26.97■■□□□ 1.91
SCAMP4-202ENST00000409472 SUPT5HO00267 1087 aaKnown RBP26.84■■□□□ 1.89
SCAMP4-202ENST00000409472 ABCC9O60706 1549 aa26.45■■□□□ 1.82
SCAMP4-202ENST00000409472 SCRIBQ14160 1630 aa26.37■■□□□ 1.81
SCAMP4-202ENST00000409472 MYO15BQ96JP2 1530 aa26.34■■□□□ 1.81
SCAMP4-202ENST00000409472 NACADO15069 1562 aa26.11■■□□□ 1.77
SCAMP4-202ENST00000409472 CHIC1Q5VXU3 224 aa25.91■■□□□ 1.74
SCAMP4-202ENST00000409472 RSF1Q96T23 1441 aaPredicted RBP25.82■■□□□ 1.72
SCAMP4-202ENST00000409472 RB1CC1Q8TDY2 1594 aa25.79■■□□□ 1.72
SCAMP4-202ENST00000409472 CECR2Q9BXF3 1484 aa25.69■■□□□ 1.7
SCAMP4-202ENST00000409472 MROH2BQ7Z745 1585 aa25.56■■□□□ 1.68
SCAMP4-202ENST00000409472 UNC13AQ9UPW8 1703 aa25.54■■□□□ 1.68
SCAMP4-202ENST00000409472 WIZO95785 1651 aa25.43■■□□□ 1.66
SCAMP4-202ENST00000409472 BAZ1AQ9NRL2 1556 aaPredicted RBP25.27■■□□□ 1.64
SCAMP4-202ENST00000409472 BICRAQ9NZM4 1560 aa25.19■■□□□ 1.62
SCAMP4-202ENST00000409472 SMARCA4P51532 1647 aa25.16■■□□□ 1.62
SCAMP4-202ENST00000409472 PABPN1Q86U42 306 aaKnown RBP eCLIP25.15■■□□□ 1.62
SCAMP4-202ENST00000409472 LOC105371045A0A1W2PR82 267 aa25.12■■□□□ 1.61
SCAMP4-202ENST00000409472 TRIM41Q8WV44 630 aa25■■□□□ 1.59
SCAMP4-202ENST00000409472 TOP2AP11388 1531 aaKnown RBP24.99■■□□□ 1.59
SCAMP4-202ENST00000409472 EIF4G1Q04637 1599 aaKnown RBP24.96■■□□□ 1.59
SCAMP4-202ENST00000409472 SMARCA2P51531 1590 aa24.87■■□□□ 1.57
SCAMP4-202ENST00000409472 CCDC88BA6NC98 1476 aa24.84■■□□□ 1.57
SCAMP4-202ENST00000409472 FAM9AQ8IZU1 332 aaPredicted RBP24.82■■□□□ 1.56
SCAMP4-202ENST00000409472 ABCC8Q09428 1581 aa24.7■■□□□ 1.54
SCAMP4-202ENST00000409472 PEG3Q9GZU2 1588 aa24.7■■□□□ 1.54
SCAMP4-202ENST00000409472 EHMT2Q96KQ7 1210 aa24.65■■□□□ 1.54
SCAMP4-202ENST00000409472 PCGF6Q9BYE7 350 aa24.61■■□□□ 1.53
SCAMP4-202ENST00000409472 ATAD2BQ9ULI0 1458 aa24.58■■□□□ 1.53
SCAMP4-202ENST00000409472 BAZ1BQ9UIG0 1483 aaKnown RBP24.48■■□□□ 1.51
SCAMP4-202ENST00000409472 SOGA1O94964 1423 aa24.32■■□□□ 1.48
SCAMP4-202ENST00000409472 HRCP23327 699 aa24.3■■□□□ 1.48
SCAMP4-202ENST00000409472 RUSC2Q8N2Y8 1516 aa24.26■■□□□ 1.47
SCAMP4-202ENST00000409472 WRNQ14191 1432 aaPredicted RBP eCLIP24.25■■□□□ 1.47
SCAMP4-202ENST00000409472 SYNJ1O43426 1573 aa24.25■■□□□ 1.47
SCAMP4-202ENST00000409472 TRIM26Q12899 539 aaPredicted RBP24.21■■□□□ 1.47
SCAMP4-202ENST00000409472 HMGXB3Q12766 1538 aa24.16■■□□□ 1.46
SCAMP4-202ENST00000409472 NCAPD3P42695 1498 aa24.15■■□□□ 1.46
SCAMP4-202ENST00000409472 EEA1Q15075 1411 aa24.03■■□□□ 1.44
SCAMP4-202ENST00000409472 PPARGC1BQ86YN6 1023 aaKnown RBP24.03■■□□□ 1.44
SCAMP4-202ENST00000409472 CSRNP3Q8WYN3 585 aa24.02■■□□□ 1.44
SCAMP4-202ENST00000409472 CEP162Q5TB80 1403 aa23.98■■□□□ 1.43
SCAMP4-202ENST00000409472 TOP2BQ02880 1626 aa23.95■■□□□ 1.42
SCAMP4-202ENST00000409472 TNIKQ9UKE5 1360 aa23.92■■□□□ 1.42
SCAMP4-202ENST00000409472 PELP1Q8IZL8 1130 aaKnown RBP23.91■■□□□ 1.42
SCAMP4-202ENST00000409472 GOLGA3Q08378 1498 aa23.9■■□□□ 1.42
SCAMP4-202ENST00000409472 BIVM-ERCC5R4GMW8 1640 aa23.9■■□□□ 1.42
SCAMP4-202ENST00000409472 UBTFP17480 764 aaKnown RBP23.87■■□□□ 1.41
SCAMP4-202ENST00000409472 CC2D2AQ9P2K1 1620 aa23.85■■□□□ 1.41
SCAMP4-202ENST00000409472 CFTRP13569 1480 aa23.85■■□□□ 1.41
SCAMP4-202ENST00000409472 CUX1P39880 1505 aa23.83■■□□□ 1.41
SCAMP4-202ENST00000409472 KIF21BO75037 1637 aa23.83■■□□□ 1.41
SCAMP4-202ENST00000409472 CEP164Q9UPV0 1460 aa23.81■■□□□ 1.4
SCAMP4-202ENST00000409472 RAPGEF2Q9Y4G8 1499 aa23.76■■□□□ 1.39
SCAMP4-202ENST00000409472 TTBK1Q5TCY1 1321 aaPredicted RBP23.74■■□□□ 1.39
SCAMP4-202ENST00000409472 PRDM2Q13029 1718 aa23.73■■□□□ 1.39
SCAMP4-202ENST00000409472 CADPSQ9ULU8 1353 aa23.63■■□□□ 1.37
SCAMP4-202ENST00000409472 CLIP1P30622 1438 aa23.6■■□□□ 1.37
SCAMP4-202ENST00000409472 RANGAP1P46060 587 aaPredicted RBP23.57■■□□□ 1.36
SCAMP4-202ENST00000409472 PRXQ9BXM0 1461 aa23.56■■□□□ 1.36
SCAMP4-202ENST00000409472 KIF27Q86VH2 1401 aa23.51■■□□□ 1.35
SCAMP4-202ENST00000409472 ERICH3Q5RHP9 1530 aa23.51■■□□□ 1.35
SCAMP4-202ENST00000409472 NESP48681 1621 aa23.48■■□□□ 1.35
SCAMP4-202ENST00000409472 FGD5Q6ZNL6 1462 aa23.45■■□□□ 1.35
SCAMP4-202ENST00000409472 VPS8Q8N3P4 1428 aa23.45■■□□□ 1.34
SCAMP4-202ENST00000409472 FANCD2Q9BXW9 1451 aa23.44■■□□□ 1.34
SCAMP4-202ENST00000409472 CUX2O14529 1486 aa23.42■■□□□ 1.34
SCAMP4-202ENST00000409472 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.41■■□□□ 1.34
SCAMP4-202ENST00000409472 DNAJC5BQ9UF47 199 aa23.38■■□□□ 1.33
SCAMP4-202ENST00000409472 ZEB1P37275 1124 aaPredicted RBP23.38■■□□□ 1.33
SCAMP4-202ENST00000409472 ARAP1Q96P48 1450 aa23.35■■□□□ 1.33
SCAMP4-202ENST00000409472 IGF1RP08069 1367 aa23.3■■□□□ 1.32
SCAMP4-202ENST00000409472 DNMBPQ6XZF7 1577 aa23.29■■□□□ 1.32
SCAMP4-202ENST00000409472 TOPBP1Q92547 1522 aa23.27■■□□□ 1.32
SCAMP4-202ENST00000409472 RAD54L2Q9Y4B4 1467 aa23.27■■□□□ 1.32
SCAMP4-202ENST00000409472 CCER1Q8TC90 406 aaPredicted RBP23.24■■□□□ 1.31
SCAMP4-202ENST00000409472 POLA1P09884 1462 aaPredicted RBP23.24■■□□□ 1.31
SCAMP4-202ENST00000409472 MYT1Q01538 1121 aa23.22■■□□□ 1.31
SCAMP4-202ENST00000409472 LAMC3Q9Y6N6 1575 aa23.22■■□□□ 1.31
SCAMP4-202ENST00000409472 ARHGAP35Q9NRY4 1499 aa23.21■■□□□ 1.31
SCAMP4-202ENST00000409472 CARMIL1Q5VZK9 1371 aa23.18■■□□□ 1.3
SCAMP4-202ENST00000409472 URB2Q14146 1524 aaKnown RBP23.18■■□□□ 1.3
SCAMP4-202ENST00000409472 APLP2Q06481 763 aa23.16■■□□□ 1.3
SCAMP4-202ENST00000409472 ABCA10Q8WWZ4 1543 aa23.15■■□□□ 1.3
SCAMP4-202ENST00000409472 KIF21AQ7Z4S6 1674 aa23.12■■□□□ 1.29
SCAMP4-202ENST00000409472 HNRNPUL2Q1KMD3 747 aaKnown RBP23.11■■□□□ 1.29
SCAMP4-202ENST00000409472 KANK4Q5T7N3 995 aaPredicted RBP23.1■■□□□ 1.29
SCAMP4-202ENST00000409472 WDR97A6NE52 1622 aa23.08■■□□□ 1.29
SCAMP4-202ENST00000409472 PDS5BQ9NTI5 1447 aa23.01■■□□□ 1.27
SCAMP4-202ENST00000409472 TDRD9Q8NDG6 1382 aaKnown RBP22.97■■□□□ 1.27
SCAMP4-202ENST00000409472 CUL7Q14999 1698 aa22.97■■□□□ 1.27
SCAMP4-202ENST00000409472 ABCA5Q8WWZ7 1642 aa22.96■■□□□ 1.27
SCAMP4-202ENST00000409472 P3H3Q8IVL6 736 aa22.92■■□□□ 1.26
SCAMP4-202ENST00000409472 CTTNBP2Q8WZ74 1663 aa22.9■■□□□ 1.26
SCAMP4-202ENST00000409472 PCF11O94913 1555 aaKnown RBP22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms