RNA–Protein interactions for RNA: ENST00000409252.6

SH3D19-202, Transcript of SH3 domain containing 19, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SH3D19, Length 4,888 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3D19-202ENST00000409252 NISCHQ9Y2I1 1504 aa17.16■□□□□ 0.34
SH3D19-202ENST00000409252 DCAF8L2P0C7V8 631 aa15.97■□□□□ 0.15
SH3D19-202ENST00000409252 SHROOM4Q9ULL8 1493 aa15.01□□□□□ -0.01
SH3D19-202ENST00000409252 ABCC9O60706 1549 aa14.91□□□□□ -0.02
SH3D19-202ENST00000409252 CCDC180Q9P1Z9 1646 aa14.7□□□□□ -0.06
SH3D19-202ENST00000409252 SUPT5HO00267 1087 aaKnown RBP14.68□□□□□ -0.06
SH3D19-202ENST00000409252 PABPN1Q86U42 306 aaKnown RBP eCLIP14.33□□□□□ -0.11
SH3D19-202ENST00000409252 ZCCHC6Q5VYS8 1495 aaKnown RBP14.26□□□□□ -0.13
SH3D19-202ENST00000409252 RB1CC1Q8TDY2 1594 aa14.16□□□□□ -0.14
SH3D19-202ENST00000409252 SCRIBQ14160 1630 aa14.11□□□□□ -0.15
SH3D19-202ENST00000409252 NACADO15069 1562 aa14.06□□□□□ -0.16
SH3D19-202ENST00000409252 DCAF1Q9Y4B6 1507 aa13.85□□□□□ -0.19
SH3D19-202ENST00000409252 EHMT2Q96KQ7 1210 aa13.84□□□□□ -0.19
SH3D19-202ENST00000409252 FAM9AQ8IZU1 332 aaPredicted RBP13.73□□□□□ -0.21
SH3D19-202ENST00000409252 TRIM41Q8WV44 630 aa13.73□□□□□ -0.21
SH3D19-202ENST00000409252 MYO15BQ96JP2 1530 aa13.67□□□□□ -0.22
SH3D19-202ENST00000409252 RANGAP1P46060 587 aaPredicted RBP13.51□□□□□ -0.25
SH3D19-202ENST00000409252 APLP2Q06481 763 aa13.43□□□□□ -0.26
SH3D19-202ENST00000409252 BAZ1AQ9NRL2 1556 aaPredicted RBP13.43□□□□□ -0.26
SH3D19-202ENST00000409252 UBTFP17480 764 aaKnown RBP13.42□□□□□ -0.26
SH3D19-202ENST00000409252 BAZ1BQ9UIG0 1483 aaKnown RBP13.42□□□□□ -0.26
SH3D19-202ENST00000409252 CECR2Q9BXF3 1484 aa13.41□□□□□ -0.26
SH3D19-202ENST00000409252 RSF1Q96T23 1441 aaPredicted RBP13.39□□□□□ -0.27
SH3D19-202ENST00000409252 ATP1B4Q9UN42 357 aaPredicted RBP13.33□□□□□ -0.28
SH3D19-202ENST00000409252 CHIC1Q5VXU3 224 aa13.3□□□□□ -0.28
SH3D19-202ENST00000409252 TTBK1Q5TCY1 1321 aaPredicted RBP13.26□□□□□ -0.29
SH3D19-202ENST00000409252 SMARCA2P51531 1590 aa13.26□□□□□ -0.29
SH3D19-202ENST00000409252 MROH2BQ7Z745 1585 aa13.26□□□□□ -0.29
SH3D19-202ENST00000409252 FBLN2P98095 1184 aa13.23□□□□□ -0.29
SH3D19-202ENST00000409252 ERCC6Q03468 1493 aa13.2□□□□□ -0.3
SH3D19-202ENST00000409252 SMARCA4P51532 1647 aa13.16□□□□□ -0.3
SH3D19-202ENST00000409252 ATAD2BQ9ULI0 1458 aa13.13□□□□□ -0.31
SH3D19-202ENST00000409252 EIF4G1Q04637 1599 aaKnown RBP13.12□□□□□ -0.31
SH3D19-202ENST00000409252 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.11□□□□□ -0.31
SH3D19-202ENST00000409252 HNRNPUL2Q1KMD3 747 aaKnown RBP13.11□□□□□ -0.31
SH3D19-202ENST00000409252 WIZO95785 1651 aa13.1□□□□□ -0.31
SH3D19-202ENST00000409252 BICRAQ9NZM4 1560 aa13.05□□□□□ -0.32
SH3D19-202ENST00000409252 TOP2AP11388 1531 aaKnown RBP13.05□□□□□ -0.32
SH3D19-202ENST00000409252 LOC105371045A0A1W2PR82 267 aa13.03□□□□□ -0.32
SH3D19-202ENST00000409252 CCDC88BA6NC98 1476 aa13.02□□□□□ -0.32
SH3D19-202ENST00000409252 PDS5BQ9NTI5 1447 aa13.01□□□□□ -0.33
SH3D19-202ENST00000409252 CC2D2AQ9P2K1 1620 aa12.99□□□□□ -0.33
SH3D19-202ENST00000409252 WRNQ14191 1432 aaPredicted RBP eCLIP12.98□□□□□ -0.33
SH3D19-202ENST00000409252 CSRNP3Q8WYN3 585 aa12.97□□□□□ -0.33
SH3D19-202ENST00000409252 UNC13AQ9UPW8 1703 aa12.97□□□□□ -0.33
SH3D19-202ENST00000409252 CADPSQ9ULU8 1353 aa12.95□□□□□ -0.34
SH3D19-202ENST00000409252 NCAPD3P42695 1498 aa12.95□□□□□ -0.34
SH3D19-202ENST00000409252 CHMP7Q8WUX9 453 aaPredicted RBP12.93□□□□□ -0.34
SH3D19-202ENST00000409252 PPARGC1BQ86YN6 1023 aaKnown RBP12.9□□□□□ -0.34
SH3D19-202ENST00000409252 MYT1LQ9UL68 1186 aa12.89□□□□□ -0.35
SH3D19-202ENST00000409252 P3H3Q8IVL6 736 aa12.87□□□□□ -0.35
SH3D19-202ENST00000409252 DNAJC5BQ9UF47 199 aa12.87□□□□□ -0.35
SH3D19-202ENST00000409252 CEP164Q9UPV0 1460 aa12.86□□□□□ -0.35
SH3D19-202ENST00000409252 FANCD2Q9BXW9 1451 aa12.82□□□□□ -0.36
SH3D19-202ENST00000409252 HMGXB3Q12766 1538 aa12.82□□□□□ -0.36
SH3D19-202ENST00000409252 KIF27Q86VH2 1401 aa12.81□□□□□ -0.36
SH3D19-202ENST00000409252 ARID3CA6NKF2 412 aa12.8□□□□□ -0.36
SH3D19-202ENST00000409252 ABCC8Q09428 1581 aa12.78□□□□□ -0.36
SH3D19-202ENST00000409252 PCGF6Q9BYE7 350 aa12.77□□□□□ -0.37
SH3D19-202ENST00000409252 CUX2O14529 1486 aa12.77□□□□□ -0.37
SH3D19-202ENST00000409252 ITGAEP38570 1179 aa12.75□□□□□ -0.37
SH3D19-202ENST00000409252 SOGA1O94964 1423 aa12.75□□□□□ -0.37
SH3D19-202ENST00000409252 EEA1Q15075 1411 aa12.73□□□□□ -0.37
SH3D19-202ENST00000409252 NPM1P06748 294 aaKnown RBP eCLIP12.73□□□□□ -0.37
SH3D19-202ENST00000409252 NESP48681 1621 aa12.71□□□□□ -0.37
SH3D19-202ENST00000409252 TDRD9Q8NDG6 1382 aaKnown RBP12.7□□□□□ -0.38
SH3D19-202ENST00000409252 CDK11AQ9UQ88 783 aaPredicted RBP12.65□□□□□ -0.38
SH3D19-202ENST00000409252 CFTRP13569 1480 aa12.64□□□□□ -0.39
SH3D19-202ENST00000409252 FAM50AQ14320 339 aaKnown RBP12.64□□□□□ -0.39
SH3D19-202ENST00000409252 GOLGA3Q08378 1498 aa12.64□□□□□ -0.39
SH3D19-202ENST00000409252 CARMIL1Q5VZK9 1371 aa12.63□□□□□ -0.39
SH3D19-202ENST00000409252 PEG3Q9GZU2 1588 aa12.6□□□□□ -0.39
SH3D19-202ENST00000409252 MRC2Q9UBG0 1479 aa12.6□□□□□ -0.39
SH3D19-202ENST00000409252 CCER1Q8TC90 406 aaPredicted RBP12.59□□□□□ -0.39
SH3D19-202ENST00000409252 FGD5Q6ZNL6 1462 aa12.58□□□□□ -0.4
SH3D19-202ENST00000409252 CLIP1P30622 1438 aa12.57□□□□□ -0.4
SH3D19-202ENST00000409252 LAMC3Q9Y6N6 1575 aa12.57□□□□□ -0.4
SH3D19-202ENST00000409252 TRIM26Q12899 539 aaPredicted RBP12.56□□□□□ -0.4
SH3D19-202ENST00000409252 ZNF777Q9ULD5 760 aaPredicted RBP12.55□□□□□ -0.4
SH3D19-202ENST00000409252 RAD54L2Q9Y4B4 1467 aa12.53□□□□□ -0.4
SH3D19-202ENST00000409252 GAPVD1Q14C86 1478 aa12.48□□□□□ -0.41
SH3D19-202ENST00000409252 CEP162Q5TB80 1403 aa12.48□□□□□ -0.41
SH3D19-202ENST00000409252 TOPBP1Q92547 1522 aa12.47□□□□□ -0.41
SH3D19-202ENST00000409252 KCNH8Q96L42 1107 aa12.46□□□□□ -0.41
SH3D19-202ENST00000409252 AQRO60306 1485 aaKnown RBP eCLIP12.46□□□□□ -0.414e-8■■■■□ 24.4
SH3D19-202ENST00000409252 MTUS2Q5JR59 1369 aa12.46□□□□□ -0.41
SH3D19-202ENST00000409252 TNIKQ9UKE5 1360 aa12.46□□□□□ -0.42
SH3D19-202ENST00000409252 CARMIL2Q6F5E8 1435 aa12.45□□□□□ -0.42
SH3D19-202ENST00000409252 IFT140Q96RY7 1462 aa12.45□□□□□ -0.42
SH3D19-202ENST00000409252 RAPGEF2Q9Y4G8 1499 aa12.44□□□□□ -0.42
SH3D19-202ENST00000409252 PLEKHD1A6NEE1 506 aa12.44□□□□□ -0.42
SH3D19-202ENST00000409252 OSCARQ8IYS5 282 aa12.44□□□□□ -0.42
SH3D19-202ENST00000409252 TRIM52Q96A61 297 aa12.44□□□□□ -0.42
SH3D19-202ENST00000409252 DNMBPQ6XZF7 1577 aa12.43□□□□□ -0.42
SH3D19-202ENST00000409252 POLA1P09884 1462 aaPredicted RBP12.4□□□□□ -0.42
SH3D19-202ENST00000409252 CUX1P39880 1505 aa12.4□□□□□ -0.42
SH3D19-202ENST00000409252 SYNJ1O43426 1573 aa12.4□□□□□ -0.42
SH3D19-202ENST00000409252 GRIN2BQ13224 1484 aa12.39□□□□□ -0.43
SH3D19-202ENST00000409252 RUSC2Q8N2Y8 1516 aa12.38□□□□□ -0.43
SH3D19-202ENST00000409252 TRHP20396 242 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms