RNA–Protein interactions for RNA: ENST00000406569.7

PMS2-204, Transcript of PMS1 homolog 2, mismatch repair system component, humanhuman

TSL 1 (best)

Gene PMS2, Length 1,719 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS2-204ENST00000406569 NISCHQ9Y2I1 1504 aa28.53■■■□□ 2.16
PMS2-204ENST00000406569 CCDC180Q9P1Z9 1646 aa24.42■■□□□ 1.5
PMS2-204ENST00000406569 ZCCHC6Q5VYS8 1495 aaKnown RBP24.18■■□□□ 1.46
PMS2-204ENST00000406569 SHROOM4Q9ULL8 1493 aa23.93■■□□□ 1.42
PMS2-204ENST00000406569 DCAF1Q9Y4B6 1507 aa23.6■■□□□ 1.37
PMS2-204ENST00000406569 SUPT5HO00267 1087 aaKnown RBP23.49■■□□□ 1.35
PMS2-204ENST00000406569 DCAF8L2P0C7V8 631 aa23.11■■□□□ 1.29
PMS2-204ENST00000406569 CHIC1Q5VXU3 224 aa23.08■■□□□ 1.28
PMS2-204ENST00000406569 MYO15BQ96JP2 1530 aa23■■□□□ 1.27
PMS2-204ENST00000406569 ABCC9O60706 1549 aa22.83■■□□□ 1.25
PMS2-204ENST00000406569 SCRIBQ14160 1630 aa22.58■■□□□ 1.21
PMS2-204ENST00000406569 RSF1Q96T23 1441 aaPredicted RBP22.52■■□□□ 1.2
PMS2-204ENST00000406569 NACADO15069 1562 aa22.48■■□□□ 1.19
PMS2-204ENST00000406569 HRCP23327 699 aa22.45■■□□□ 1.18
PMS2-204ENST00000406569 RB1CC1Q8TDY2 1594 aa22.37■■□□□ 1.17
PMS2-204ENST00000406569 LOC105371045A0A1W2PR82 267 aa22.22■■□□□ 1.15
PMS2-204ENST00000406569 PCGF6Q9BYE7 350 aa22.22■■□□□ 1.15
PMS2-204ENST00000406569 CECR2Q9BXF3 1484 aa22.11■■□□□ 1.13
PMS2-204ENST00000406569 MROH2BQ7Z745 1585 aa22.1■■□□□ 1.13
PMS2-204ENST00000406569 TRIM41Q8WV44 630 aa21.99■■□□□ 1.11
PMS2-204ENST00000406569 WIZO95785 1651 aa21.99■■□□□ 1.11
PMS2-204ENST00000406569 BAZ1AQ9NRL2 1556 aaPredicted RBP21.98■■□□□ 1.11
PMS2-204ENST00000406569 TRIM26Q12899 539 aaPredicted RBP21.97■■□□□ 1.11
PMS2-204ENST00000406569 EIF4G1Q04637 1599 aaKnown RBP21.9■■□□□ 1.1
PMS2-204ENST00000406569 UNC13AQ9UPW8 1703 aa21.77■■□□□ 1.07
PMS2-204ENST00000406569 TOP2AP11388 1531 aaKnown RBP21.75■■□□□ 1.07
PMS2-204ENST00000406569 PPARGC1BQ86YN6 1023 aaKnown RBP21.75■■□□□ 1.07
PMS2-204ENST00000406569 SMARCA4P51532 1647 aa21.74■■□□□ 1.07
PMS2-204ENST00000406569 FAM9AQ8IZU1 332 aaPredicted RBP21.63■■□□□ 1.05
PMS2-204ENST00000406569 SMARCA2P51531 1590 aa21.61■■□□□ 1.05
PMS2-204ENST00000406569 ZEB1P37275 1124 aaPredicted RBP21.6■■□□□ 1.05
PMS2-204ENST00000406569 CCDC88BA6NC98 1476 aa21.55■■□□□ 1.04
PMS2-204ENST00000406569 BICRAQ9NZM4 1560 aa21.46■■□□□ 1.03
PMS2-204ENST00000406569 PEG3Q9GZU2 1588 aa21.44■■□□□ 1.02
PMS2-204ENST00000406569 ABCC8Q09428 1581 aa21.43■■□□□ 1.02
PMS2-204ENST00000406569 WRNQ14191 1432 aaPredicted RBP eCLIP21.35■■□□□ 1.01
PMS2-204ENST00000406569 EEA1Q15075 1411 aa21.35■■□□□ 1.01
PMS2-204ENST00000406569 EHMT2Q96KQ7 1210 aa21.27■■□□□ 1
PMS2-204ENST00000406569 TNIKQ9UKE5 1360 aa21.25■□□□□ 0.99
PMS2-204ENST00000406569 SOGA1O94964 1423 aa21.22■□□□□ 0.99
PMS2-204ENST00000406569 CEP162Q5TB80 1403 aa21.2■□□□□ 0.98
PMS2-204ENST00000406569 CSRNP3Q8WYN3 585 aa21.12■□□□□ 0.97
PMS2-204ENST00000406569 RUSC2Q8N2Y8 1516 aa21.11■□□□□ 0.97
PMS2-204ENST00000406569 ATAD2BQ9ULI0 1458 aa21.11■□□□□ 0.97
PMS2-204ENST00000406569 GOLGA3Q08378 1498 aa21.1■□□□□ 0.97
PMS2-204ENST00000406569 PABPN1Q86U42 306 aaKnown RBP eCLIP21.09■□□□□ 0.97
PMS2-204ENST00000406569 KIF21BO75037 1637 aa21.07■□□□□ 0.96
PMS2-204ENST00000406569 SYNJ1O43426 1573 aa21.06■□□□□ 0.96
PMS2-204ENST00000406569 BAZ1BQ9UIG0 1483 aaKnown RBP21.01■□□□□ 0.95
PMS2-204ENST00000406569 CEP164Q9UPV0 1460 aa20.99■□□□□ 0.95
PMS2-204ENST00000406569 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.91■□□□□ 0.94
PMS2-204ENST00000406569 CCER1Q8TC90 406 aaPredicted RBP20.9■□□□□ 0.94
PMS2-204ENST00000406569 TOP2BQ02880 1626 aa20.89■□□□□ 0.93
PMS2-204ENST00000406569 UBTFP17480 764 aaKnown RBP20.89■□□□□ 0.93
PMS2-204ENST00000406569 BIVM-ERCC5R4GMW8 1640 aa20.87■□□□□ 0.93
PMS2-204ENST00000406569 HMGXB3Q12766 1538 aa20.82■□□□□ 0.92
PMS2-204ENST00000406569 CLIP1P30622 1438 aa20.79■□□□□ 0.92
PMS2-204ENST00000406569 VPS8Q8N3P4 1428 aa20.77■□□□□ 0.92
PMS2-204ENST00000406569 NCAPD3P42695 1498 aa20.75■□□□□ 0.91
PMS2-204ENST00000406569 RAPGEF2Q9Y4G8 1499 aa20.75■□□□□ 0.91
PMS2-204ENST00000406569 ERICH3Q5RHP9 1530 aa20.73■□□□□ 0.91
PMS2-204ENST00000406569 PRXQ9BXM0 1461 aa20.66■□□□□ 0.9
PMS2-204ENST00000406569 TTBK1Q5TCY1 1321 aaPredicted RBP20.65■□□□□ 0.9
PMS2-204ENST00000406569 SCAF1Q9H7N4 1312 aaKnown RBP20.61■□□□□ 0.89
PMS2-204ENST00000406569 CUX1P39880 1505 aa20.6■□□□□ 0.89
PMS2-204ENST00000406569 PRDM2Q13029 1718 aa20.59■□□□□ 0.89
PMS2-204ENST00000406569 CFTRP13569 1480 aa20.57■□□□□ 0.88
PMS2-204ENST00000406569 DIEXFQ68CQ4 756 aaKnown RBP20.56■□□□□ 0.88
PMS2-204ENST00000406569 ARAP1Q96P48 1450 aa20.52■□□□□ 0.87
PMS2-204ENST00000406569 KIF27Q86VH2 1401 aa20.49■□□□□ 0.87
PMS2-204ENST00000406569 ZNF316A6NFI3 1004 aaPredicted RBP20.47■□□□□ 0.87
PMS2-204ENST00000406569 ACIN1Q9UKV3 1341 aaKnown RBP20.47■□□□□ 0.87
PMS2-204ENST00000406569 APLP2Q06481 763 aa20.47■□□□□ 0.87
PMS2-204ENST00000406569 HNRNPUL2Q1KMD3 747 aaKnown RBP20.41■□□□□ 0.86
PMS2-204ENST00000406569 PELP1Q8IZL8 1130 aaKnown RBP20.4■□□□□ 0.86
PMS2-204ENST00000406569 CLSPNQ9HAW4 1339 aa20.38■□□□□ 0.85
PMS2-204ENST00000406569 NEUROD1Q13562 356 aa20.36■□□□□ 0.85
PMS2-204ENST00000406569 RRBP1Q9P2E9 1410 aaKnown RBP20.34■□□□□ 0.85
PMS2-204ENST00000406569 CENPBP07199 599 aaPredicted RBP20.34■□□□□ 0.85
PMS2-204ENST00000406569 ARHGAP35Q9NRY4 1499 aa20.32■□□□□ 0.84
PMS2-204ENST00000406569 CUX2O14529 1486 aa20.3■□□□□ 0.84
PMS2-204ENST00000406569 MAP3K1Q13233 1512 aa20.28■□□□□ 0.84
PMS2-204ENST00000406569 CADPSQ9ULU8 1353 aa20.27■□□□□ 0.83
PMS2-204ENST00000406569 DHX57Q6P158 1386 aaKnown RBP20.25■□□□□ 0.83
PMS2-204ENST00000406569 IGF1RP08069 1367 aa20.25■□□□□ 0.83
PMS2-204ENST00000406569 KANK4Q5T7N3 995 aaPredicted RBP20.24■□□□□ 0.83
PMS2-204ENST00000406569 RANGAP1P46060 587 aaPredicted RBP20.23■□□□□ 0.83
PMS2-204ENST00000406569 FGD5Q6ZNL6 1462 aa20.18■□□□□ 0.82
PMS2-204ENST00000406569 TIAM1Q13009 1591 aa20.16■□□□□ 0.82
PMS2-204ENST00000406569 CCNB3Q8WWL7 1395 aa20.15■□□□□ 0.82
PMS2-204ENST00000406569 GTF3C3Q9Y5Q9 886 aa20.13■□□□□ 0.81
PMS2-204ENST00000406569 CARMIL1Q5VZK9 1371 aa20.13■□□□□ 0.81
PMS2-204ENST00000406569 CC2D2AQ9P2K1 1620 aa20.11■□□□□ 0.81
PMS2-204ENST00000406569 MIER1Q8N108 512 aa20.1■□□□□ 0.81
PMS2-204ENST00000406569 CFAP43Q8NDM7 1665 aa20.1■□□□□ 0.81
PMS2-204ENST00000406569 DNMBPQ6XZF7 1577 aa20.08■□□□□ 0.81
PMS2-204ENST00000406569 FANCD2Q9BXW9 1451 aa20.06■□□□□ 0.8
PMS2-204ENST00000406569 ABCA10Q8WWZ4 1543 aa20.05■□□□□ 0.8
PMS2-204ENST00000406569 LRRC9Q6ZRR7 1453 aa20.04■□□□□ 0.8
PMS2-204ENST00000406569 FHAD1B1AJZ9 1412 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms