RNA–Protein interactions for RNA: ENST00000403904.5

CSNK1E-204, Transcript of casein kinase 1 epsilon, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CSNK1E, Length 1,580 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-204ENST00000403904 UTP3Q9NQZ2 479 aaKnown RBP eCLIP35.85■■■■□ 3.331e-6■■■■■ 83.4
CSNK1E-204ENST00000403904 XPO5Q9HAV4 1204 aaKnown RBP eCLIP39.55■■■■□ 3.926e-12■■■■■ 78.7
CSNK1E-204ENST00000403904 FMR1Q06787 632 aaKnown RBP eCLIP39.62■■■■□ 3.933e-11■■■■■ 66.2
CSNK1E-204ENST00000403904 TBRG4Q969Z0 631 aaKnown RBP eCLIP32.99■■■□□ 2.872e-7■■■■■ 62.8
CSNK1E-204ENST00000403904 SF3B1O75533 1304 aaKnown RBP eCLIP35.72■■■■□ 3.312e-6■■■■■ 43.1
CSNK1E-204ENST00000403904 GTF2F1P35269 517 aaKnown RBP eCLIP35.3■■■■□ 3.242e-9■■■■■ 41.8
CSNK1E-204ENST00000403904 RBM15Q96T37 977 aaKnown RBP eCLIP33.69■■■□□ 2.982e-7■■■■■ 39.2
CSNK1E-204ENST00000403904 SF3A3Q12874 501 aaKnown RBP eCLIP31.53■■■□□ 2.649e-8■■■■■ 35.8
CSNK1E-204ENST00000403904 SUB1P53999 127 aaKnown RBP eCLIP25.91■■□□□ 1.741e-6■■■■■ 30.8
CSNK1E-204ENST00000403904 CSTF2P33240 577 aaKnown RBP eCLIP31.9■■■□□ 2.78e-7■■■■■ 29.8
CSNK1E-204ENST00000403904 SLTMQ9NWH9 1034 aaKnown RBP eCLIP34.6■■■■□ 3.133e-10■■■■■ 28.7
CSNK1E-204ENST00000403904 PCBP2Q15366 365 aaKnown RBP eCLIP32.11■■■□□ 2.731e-6■■■■■ 27.4
CSNK1E-204ENST00000403904 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP30.57■■■□□ 2.486e-7■■■■■ 27.1
CSNK1E-204ENST00000403904 XRN2Q9H0D6 950 aaKnown RBP eCLIP37.56■■■■□ 3.62e-6■■■■□ 25.6
CSNK1E-204ENST00000403904 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP50.78■■■■■ 5.728e-8■■■■□ 24.8
CSNK1E-204ENST00000403904 DDX3XO00571 662 aaKnown RBP eCLIP35.14■■■■□ 3.225e-13■■■■□ 24.3
CSNK1E-204ENST00000403904 AQRO60306 1485 aaKnown RBP eCLIP55.85■■■■■ 6.531e-6■■■■□ 24
CSNK1E-204ENST00000403904 SF3B4Q15427 424 aaKnown RBP eCLIP29.75■■■□□ 2.353e-18■■■■□ 21.6
CSNK1E-204ENST00000403904 BUD13Q9BRD0 619 aaKnown RBP eCLIP36.35■■■■□ 3.411e-7■■■□□ 19
CSNK1E-204ENST00000403904 METAP2P50579 478 aaKnown RBP eCLIP38.82■■■■□ 3.812e-6■■■□□ 18.9
CSNK1E-204ENST00000403904 NKRFO15226 690 aaKnown RBP eCLIP37.59■■■■□ 3.617e-9■■■□□ 16.7
CSNK1E-204ENST00000403904 RBM5P52756 815 aaKnown RBP eCLIP40.2■■■■■ 4.032e-8■■■□□ 16.5
CSNK1E-204ENST00000403904 DDX24Q9GZR7 859 aaKnown RBP eCLIP40.3■■■■■ 4.043e-7■■■□□ 15.9
CSNK1E-204ENST00000403904 PRPF4O43172 522 aaKnown RBP eCLIP32.22■■■□□ 2.753e-16■■■□□ 15.7
CSNK1E-204ENST00000403904 EFTUD2Q15029 972 aaKnown RBP eCLIP32.91■■■□□ 2.861e-7■■■□□ 15.6
CSNK1E-204ENST00000403904 HLTFQ14527 1009 aaKnown RBP eCLIP33.3■■■□□ 2.927e-7■■■□□ 14.7
CSNK1E-204ENST00000403904 GRWD1Q9BQ67 446 aaKnown RBP eCLIP49.64■■■■■ 5.541e-6■■■□□ 14.6
CSNK1E-204ENST00000403904 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP27.51■■□□□ 1.995e-7■■□□□ 14.3
CSNK1E-204ENST00000403904 CDC40O60508 579 aaKnown RBP eCLIP30.27■■■□□ 2.442e-7■■□□□ 14
CSNK1E-204ENST00000403904 ZNF622Q969S3 477 aaKnown RBP eCLIP41.52■■■■■ 4.245e-7■■□□□ 13.7
CSNK1E-204ENST00000403904 NCBP2P52298 156 aaKnown RBP eCLIP31.13■■■□□ 2.574e-8■■□□□ 13.3
CSNK1E-204ENST00000403904 SDAD1Q9NVU7 687 aaKnown RBP eCLIP30.91■■■□□ 2.542e-6■■□□□ 13.2
CSNK1E-204ENST00000403904 PPIGQ13427 754 aaKnown RBP eCLIP36.44■■■■□ 3.424e-7■■□□□ 13
CSNK1E-204ENST00000403904 GPKOWQ92917 476 aaPredicted RBP eCLIP38.47■■■■□ 3.752e-6■■□□□ 13
CSNK1E-204ENST00000403904 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP34.8■■■■□ 3.161e-8■■□□□ 12.8
CSNK1E-204ENST00000403904 NOLC1Q14978 699 aaKnown RBP eCLIP36.38■■■■□ 3.413e-6■■□□□ 12.8
CSNK1E-204ENST00000403904 U2AF2P26368 475 aaKnown RBP eCLIP38.04■■■■□ 3.683e-11■■□□□ 12.7
CSNK1E-204ENST00000403904 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP51.76■■■■■ 5.888e-8■■□□□ 12.3
CSNK1E-204ENST00000403904 FTOQ9C0B1 505 aaKnown RBP eCLIP37.77■■■■□ 3.644e-9■■□□□ 11.5
CSNK1E-204ENST00000403904 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP35.52■■■■□ 3.282e-6■■□□□ 11.5
CSNK1E-204ENST00000403904 SRSF1Q07955 248 aaKnown RBP eCLIP29.32■■■□□ 2.281e-6■□□□□ 11.3
CSNK1E-204ENST00000403904 YBX3P16989 372 aaKnown RBP eCLIP41.08■■■■■ 4.173e-7■□□□□ 10.1
CSNK1E-204ENST00000403904 EIF3HO15372 352 aaKnown RBP eCLIP33.18■■■□□ 2.92e-8■□□□□ 9.9
CSNK1E-204ENST00000403904 RBM22Q9NW64 420 aaKnown RBP eCLIP33.85■■■■□ 3.012e-6■□□□□ 9.4
Retrieved 44 of 44 RNA–protein pairs in 8.7 ms