RNA–Protein interactions for RNA: ENST00000399848.7

LDLRAD4-203, Transcript of low density lipoprotein receptor class A domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LDLRAD4, Length 8,633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAD4-203ENST00000399848 DCAF8L2P0C7V8 631 aa22.37■■□□□ 1.17
LDLRAD4-203ENST00000399848 PELP1Q8IZL8 1130 aaKnown RBP21.79■■□□□ 1.08
LDLRAD4-203ENST00000399848 FAM9AQ8IZU1 332 aaPredicted RBP21.44■■□□□ 1.02
LDLRAD4-203ENST00000399848 SUPT5HO00267 1087 aaKnown RBP21.33■■□□□ 1.01
LDLRAD4-203ENST00000399848 APLP2Q06481 763 aa20.92■□□□□ 0.94
LDLRAD4-203ENST00000399848 EHMT2Q96KQ7 1210 aa20.78■□□□□ 0.92
LDLRAD4-203ENST00000399848 CCER1Q8TC90 406 aaPredicted RBP20.76■□□□□ 0.91
LDLRAD4-203ENST00000399848 SHROOM4Q9ULL8 1493 aa20.75■□□□□ 0.91
LDLRAD4-203ENST00000399848 ERICH6Q7L0X2 663 aa20.75■□□□□ 0.91
LDLRAD4-203ENST00000399848 NISCHQ9Y2I1 1504 aa20.72■□□□□ 0.91
LDLRAD4-203ENST00000399848 CENPBP07199 599 aaPredicted RBP20.59■□□□□ 0.89
LDLRAD4-203ENST00000399848 MYT1Q01538 1121 aa20.47■□□□□ 0.87
LDLRAD4-203ENST00000399848 ZEB1P37275 1124 aaPredicted RBP20.39■□□□□ 0.85
LDLRAD4-203ENST00000399848 PCGF6Q9BYE7 350 aa20.31■□□□□ 0.84
LDLRAD4-203ENST00000399848 NEFLP07196 543 aa20.23■□□□□ 0.83
LDLRAD4-203ENST00000399848 TTBK1Q5TCY1 1321 aaPredicted RBP20.19■□□□□ 0.82
LDLRAD4-203ENST00000399848 ATP1B4Q9UN42 357 aaPredicted RBP19.9■□□□□ 0.78
LDLRAD4-203ENST00000399848 RANGAP1P46060 587 aaPredicted RBP19.88■□□□□ 0.77
LDLRAD4-203ENST00000399848 TRIM41Q8WV44 630 aa19.85■□□□□ 0.77
LDLRAD4-203ENST00000399848 DAXXQ9UER7 740 aaPredicted RBP19.85■□□□□ 0.77
LDLRAD4-203ENST00000399848 YTHDC1Q96MU7 727 aaKnown RBP19.81■□□□□ 0.76
LDLRAD4-203ENST00000399848 UBTFP17480 764 aaKnown RBP19.76■□□□□ 0.75
LDLRAD4-203ENST00000399848 MYT1LQ9UL68 1186 aa19.74■□□□□ 0.75
LDLRAD4-203ENST00000399848 TRIM26Q12899 539 aaPredicted RBP19.43■□□□□ 0.7
LDLRAD4-203ENST00000399848 RTL5Q5HYW3 569 aaPredicted RBP19.34■□□□□ 0.69
LDLRAD4-203ENST00000399848 ZNF316A6NFI3 1004 aaPredicted RBP19.33■□□□□ 0.68
LDLRAD4-203ENST00000399848 POLR3GLQ9BT43 218 aa19.29■□□□□ 0.68
LDLRAD4-203ENST00000399848 HRCP23327 699 aa19.25■□□□□ 0.67
LDLRAD4-203ENST00000399848 PPARGC1BQ86YN6 1023 aaKnown RBP19.22■□□□□ 0.67
LDLRAD4-203ENST00000399848 CLSPNQ9HAW4 1339 aa19.18■□□□□ 0.66
LDLRAD4-203ENST00000399848 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.18■□□□□ 0.66
LDLRAD4-203ENST00000399848 HNRNPUL2Q1KMD3 747 aaKnown RBP19.18■□□□□ 0.66
LDLRAD4-203ENST00000399848 ITGAEP38570 1179 aa19.14■□□□□ 0.65
LDLRAD4-203ENST00000399848 CHIC1Q5VXU3 224 aa19.07■□□□□ 0.64
LDLRAD4-203ENST00000399848 SLC4A1APQ9BWU0 796 aaKnown RBP19.04■□□□□ 0.64
LDLRAD4-203ENST00000399848 CNGB1Q14028 1251 aaPredicted RBP18.99■□□□□ 0.63
LDLRAD4-203ENST00000399848 DIEXFQ68CQ4 756 aaKnown RBP18.95■□□□□ 0.62
LDLRAD4-203ENST00000399848 ZBTB47Q9UFB7 747 aaPredicted RBP18.85■□□□□ 0.61
LDLRAD4-203ENST00000399848 CDK11AQ9UQ88 783 aaPredicted RBP18.79■□□□□ 0.6
LDLRAD4-203ENST00000399848 ESF1Q9H501 851 aaKnown RBP18.75■□□□□ 0.59
LDLRAD4-203ENST00000399848 LOC105371045A0A1W2PR82 267 aa18.71■□□□□ 0.59
LDLRAD4-203ENST00000399848 BCANQ96GW7 911 aa18.69■□□□□ 0.58
LDLRAD4-203ENST00000399848 ANP32CO43423 234 aa18.68■□□□□ 0.58
LDLRAD4-203ENST00000399848 FAM50AQ14320 339 aaKnown RBP18.68■□□□□ 0.58
LDLRAD4-203ENST00000399848 TRIM52Q96A61 297 aa18.62■□□□□ 0.57
LDLRAD4-203ENST00000399848 CANXP27824 592 aaKnown RBP18.6■□□□□ 0.57
LDLRAD4-203ENST00000399848 ANP32AP39687 249 aaKnown RBP18.58■□□□□ 0.56
LDLRAD4-203ENST00000399848 GTF3C3Q9Y5Q9 886 aa18.57■□□□□ 0.56
LDLRAD4-203ENST00000399848 NEUROD1Q13562 356 aa18.55■□□□□ 0.56
LDLRAD4-203ENST00000399848 NEFMP07197 916 aa18.54■□□□□ 0.56
LDLRAD4-203ENST00000399848 ANP32BQ92688 251 aaKnown RBP18.53■□□□□ 0.56
LDLRAD4-203ENST00000399848 FBLN2P98095 1184 aa18.47■□□□□ 0.55
LDLRAD4-203ENST00000399848 SLC24A1O60721 1099 aa18.47■□□□□ 0.55
LDLRAD4-203ENST00000399848 ZNF326Q5BKZ1 582 aaKnown RBP18.44■□□□□ 0.54
LDLRAD4-203ENST00000399848 NPM1P06748 294 aaKnown RBP eCLIP18.43■□□□□ 0.54
LDLRAD4-203ENST00000399848 GLIPR1L2Q4G1C9 344 aa18.41■□□□□ 0.54
LDLRAD4-203ENST00000399848 BCL11AQ9H165 835 aa18.37■□□□□ 0.53
LDLRAD4-203ENST00000399848 HSP90AA1P07900 732 aaKnown RBP18.35■□□□□ 0.53
LDLRAD4-203ENST00000399848 EIF5BO60841 1220 aaKnown RBP18.32■□□□□ 0.52
LDLRAD4-203ENST00000399848 UPF2Q9HAU5 1272 aaKnown RBP18.32■□□□□ 0.52
LDLRAD4-203ENST00000399848 NPM2Q86SE8 214 aaKnown RBP18.26■□□□□ 0.51
LDLRAD4-203ENST00000399848 ACIN1Q9UKV3 1341 aaKnown RBP18.23■□□□□ 0.51
LDLRAD4-203ENST00000399848 STAG3Q9UJ98 1225 aa18.22■□□□□ 0.51
LDLRAD4-203ENST00000399848 PLPPR3Q6T4P5 718 aa18.21■□□□□ 0.51
LDLRAD4-203ENST00000399848 ABCC9O60706 1549 aa18.17■□□□□ 0.5
LDLRAD4-203ENST00000399848 FKBP8Q14318 412 aa18.05■□□□□ 0.48
LDLRAD4-203ENST00000399848 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.03■□□□□ 0.48
LDLRAD4-203ENST00000399848 TONSLQ96HA7 1378 aa18.03■□□□□ 0.48
LDLRAD4-203ENST00000399848 SCAF1Q9H7N4 1312 aaKnown RBP18.02■□□□□ 0.47
LDLRAD4-203ENST00000399848 HNRNPUQ00839 825 aaKnown RBP eCLIP17.98■□□□□ 0.473e-6■■■■□ 20.1
LDLRAD4-203ENST00000399848 A0A0G2JS52 829 aa17.97■□□□□ 0.47
LDLRAD4-203ENST00000399848 CDK11BP21127 795 aaKnown RBP17.96■□□□□ 0.47
LDLRAD4-203ENST00000399848 CCDC136Q96JN2 1154 aa17.95■□□□□ 0.46
LDLRAD4-203ENST00000399848 PABPN1Q86U42 306 aaKnown RBP eCLIP17.94■□□□□ 0.46
LDLRAD4-203ENST00000399848 NBR1Q14596 966 aa17.93■□□□□ 0.46
LDLRAD4-203ENST00000399848 ZNF777Q9ULD5 760 aaPredicted RBP17.9■□□□□ 0.46
LDLRAD4-203ENST00000399848 HAP1P54257 671 aaPredicted RBP17.89■□□□□ 0.45
LDLRAD4-203ENST00000399848 TMC1Q8TDI8 760 aa17.89■□□□□ 0.45
LDLRAD4-203ENST00000399848 FAM9BQ8IZU0 186 aa17.88■□□□□ 0.45
LDLRAD4-203ENST00000399848 MYH16Q9H6N6 1097 aa17.88■□□□□ 0.45
LDLRAD4-203ENST00000399848 ANP32EQ9BTT0 268 aa17.87■□□□□ 0.45
LDLRAD4-203ENST00000399848 C14orf37Q86TY3 774 aa17.86■□□□□ 0.45
LDLRAD4-203ENST00000399848 AEBP2Q6ZN18 517 aaPredicted RBP17.85■□□□□ 0.45
LDLRAD4-203ENST00000399848 ARXQ96QS3 562 aa17.85■□□□□ 0.45
LDLRAD4-203ENST00000399848 WDR43Q15061 677 aaKnown RBP eCLIP17.84■□□□□ 0.45
LDLRAD4-203ENST00000399848 P3H3Q8IVL6 736 aa17.83■□□□□ 0.44
LDLRAD4-203ENST00000399848 TRIM44Q96DX7 344 aaPredicted RBP17.82■□□□□ 0.44
LDLRAD4-203ENST00000399848 BECN1Q14457 450 aa17.82■□□□□ 0.44
LDLRAD4-203ENST00000399848 TNNT2P45379 298 aaPredicted RBP17.81■□□□□ 0.44
LDLRAD4-203ENST00000399848 ARID3CA6NKF2 412 aa17.8■□□□□ 0.44
LDLRAD4-203ENST00000399848 DDRGK1Q96HY6 314 aa17.8■□□□□ 0.44
LDLRAD4-203ENST00000399848 TRHP20396 242 aaPredicted RBP17.78■□□□□ 0.44
LDLRAD4-203ENST00000399848 CSRNP3Q8WYN3 585 aa17.78■□□□□ 0.44
LDLRAD4-203ENST00000399848 DDX10Q13206 875 aaKnown RBP17.78■□□□□ 0.44
LDLRAD4-203ENST00000399848 NCLP19338 710 aaKnown RBP17.78■□□□□ 0.44
LDLRAD4-203ENST00000399848 CHGAP10645 457 aaKnown RBP17.77■□□□□ 0.44
LDLRAD4-203ENST00000399848 GOLGA6L22H0YM25 854 aa17.76■□□□□ 0.43
LDLRAD4-203ENST00000399848 ARID4BQ4LE39 1312 aaPredicted RBP17.76■□□□□ 0.43
LDLRAD4-203ENST00000399848 SALL2Q9Y467 1007 aaPredicted RBP17.76■□□□□ 0.43
LDLRAD4-203ENST00000399848 DCAF1Q9Y4B6 1507 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms