RNA–Protein interactions for RNA: ENST00000397101.5

SEC13-205, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-205ENST00000397101 NISCHQ9Y2I1 1504 aa34.42■■■■□ 3.1
SEC13-205ENST00000397101 ABCC9O60706 1549 aa31.35■■■□□ 2.61
SEC13-205ENST00000397101 CCDC180Q9P1Z9 1646 aa31.06■■■□□ 2.56
SEC13-205ENST00000397101 DNAJC5BQ9UF47 199 aa29.79■■■□□ 2.36
SEC13-205ENST00000397101 RB1CC1Q8TDY2 1594 aa29.76■■■□□ 2.35
SEC13-205ENST00000397101 NACADO15069 1562 aa29.5■■■□□ 2.31
SEC13-205ENST00000397101 PABPN1Q86U42 306 aaKnown RBP eCLIP29.11■■■□□ 2.25
SEC13-205ENST00000397101 DCAF8L2P0C7V8 631 aa29.07■■■□□ 2.24
SEC13-205ENST00000397101 MYO15BQ96JP2 1530 aa29.06■■■□□ 2.24
SEC13-205ENST00000397101 UNC13AQ9UPW8 1703 aa28.97■■■□□ 2.23
SEC13-205ENST00000397101 BICRAQ9NZM4 1560 aa28.88■■■□□ 2.21
SEC13-205ENST00000397101 SHROOM4Q9ULL8 1493 aa28.61■■■□□ 2.17
SEC13-205ENST00000397101 DCAF1Q9Y4B6 1507 aa28.5■■■□□ 2.15
SEC13-205ENST00000397101 ZCCHC6Q5VYS8 1495 aaKnown RBP28.46■■■□□ 2.15
SEC13-205ENST00000397101 CECR2Q9BXF3 1484 aa28.34■■■□□ 2.13
SEC13-205ENST00000397101 CC2D2AQ9P2K1 1620 aa28.33■■■□□ 2.13
SEC13-205ENST00000397101 EIF4G1Q04637 1599 aaKnown RBP28.21■■■□□ 2.11
SEC13-205ENST00000397101 SCRIBQ14160 1630 aa28.16■■■□□ 2.1
SEC13-205ENST00000397101 DNAJC5Q9H3Z4 198 aa27.73■■■□□ 2.03
SEC13-205ENST00000397101 CUX2O14529 1486 aa27.32■■□□□ 1.96
SEC13-205ENST00000397101 NCAPD3P42695 1498 aa27.26■■□□□ 1.95
SEC13-205ENST00000397101 ERCC6Q03468 1493 aa27.13■■□□□ 1.93
SEC13-205ENST00000397101 ATAD2BQ9ULI0 1458 aa27.07■■□□□ 1.92
SEC13-205ENST00000397101 HMGXB3Q12766 1538 aa27■■□□□ 1.91
SEC13-205ENST00000397101 SMARCA2P51531 1590 aa26.98■■□□□ 1.91
SEC13-205ENST00000397101 SMARCA4P51532 1647 aa26.9■■□□□ 1.9
SEC13-205ENST00000397101 NESP48681 1621 aa26.81■■□□□ 1.88
SEC13-205ENST00000397101 BAZ1AQ9NRL2 1556 aaPredicted RBP26.75■■□□□ 1.87
SEC13-205ENST00000397101 BAZ1BQ9UIG0 1483 aaKnown RBP26.75■■□□□ 1.87
SEC13-205ENST00000397101 PEG3Q9GZU2 1588 aa26.73■■□□□ 1.87
SEC13-205ENST00000397101 THOC2Q8NI27 1593 aaKnown RBP26.67■■□□□ 1.86
SEC13-205ENST00000397101 LAMC3Q9Y6N6 1575 aa26.67■■□□□ 1.86
SEC13-205ENST00000397101 PDS5BQ9NTI5 1447 aa26.55■■□□□ 1.84
SEC13-205ENST00000397101 MROH2BQ7Z745 1585 aa26.46■■□□□ 1.83
SEC13-205ENST00000397101 KIF21AQ7Z4S6 1674 aa26.43■■□□□ 1.82
SEC13-205ENST00000397101 CADPSQ9ULU8 1353 aa26.39■■□□□ 1.82
SEC13-205ENST00000397101 MRC2Q9UBG0 1479 aa26.3■■□□□ 1.8
SEC13-205ENST00000397101 WDR62O43379 1518 aa26.27■■□□□ 1.8
SEC13-205ENST00000397101 TRIM41Q8WV44 630 aa26.2■■□□□ 1.78
SEC13-205ENST00000397101 CEP164Q9UPV0 1460 aa26.11■■□□□ 1.77
SEC13-205ENST00000397101 WIZO95785 1651 aa26.07■■□□□ 1.76
SEC13-205ENST00000397101 FANCD2Q9BXW9 1451 aa26.04■■□□□ 1.76
SEC13-205ENST00000397101 CFTRP13569 1480 aa26.01■■□□□ 1.75
SEC13-205ENST00000397101 OSCARQ8IYS5 282 aa25.97■■□□□ 1.75
SEC13-205ENST00000397101 URB2Q14146 1524 aaKnown RBP25.83■■□□□ 1.73
SEC13-205ENST00000397101 RSF1Q96T23 1441 aaPredicted RBP25.81■■□□□ 1.72
SEC13-205ENST00000397101 TOP2AP11388 1531 aaKnown RBP25.8■■□□□ 1.72
SEC13-205ENST00000397101 IFT140Q96RY7 1462 aa25.64■■□□□ 1.69
SEC13-205ENST00000397101 PRDM2Q13029 1718 aa25.61■■□□□ 1.69
SEC13-205ENST00000397101 RIMBP3CA6NJZ7 1639 aa25.6■■□□□ 1.69
SEC13-205ENST00000397101 RIMBP3BA6NNM3 1639 aa25.6■■□□□ 1.69
SEC13-205ENST00000397101 RIMBP3Q9UFD9 1639 aa25.6■■□□□ 1.69
SEC13-205ENST00000397101 ZNF608Q9ULD9 1512 aaPredicted RBP25.56■■□□□ 1.68
SEC13-205ENST00000397101 ARHGEF11O15085 1522 aa25.52■■□□□ 1.68
SEC13-205ENST00000397101 ABCC8Q09428 1581 aa25.51■■□□□ 1.67
SEC13-205ENST00000397101 CCDC88BA6NC98 1476 aa25.5■■□□□ 1.67
SEC13-205ENST00000397101 TOPBP1Q92547 1522 aa25.5■■□□□ 1.67
SEC13-205ENST00000397101 EIF4G3O43432 1585 aaKnown RBP25.39■■□□□ 1.66
SEC13-205ENST00000397101 DNMBPQ6XZF7 1577 aa25.38■■□□□ 1.65
SEC13-205ENST00000397101 CYB5RLQ6IPT4 315 aa25.32■■□□□ 1.64
SEC13-205ENST00000397101 TARBP1Q13395 1621 aaKnown RBP25.3■■□□□ 1.64
SEC13-205ENST00000397101 AQRO60306 1485 aaKnown RBP eCLIP25.28■■□□□ 1.641e-10■■■■■ 36.9
SEC13-205ENST00000397101 ARAP1Q96P48 1450 aa25.23■■□□□ 1.63
SEC13-205ENST00000397101 CHD1O14646 1710 aa25.23■■□□□ 1.63
SEC13-205ENST00000397101 POLA1P09884 1462 aaPredicted RBP25.22■■□□□ 1.63
SEC13-205ENST00000397101 FBLN2P98095 1184 aa25.14■■□□□ 1.62
SEC13-205ENST00000397101 TRHP20396 242 aaPredicted RBP25.13■■□□□ 1.61
SEC13-205ENST00000397101 WDR97A6NE52 1622 aa25.12■■□□□ 1.61
SEC13-205ENST00000397101 SOGA1O94964 1423 aa25.1■■□□□ 1.61
SEC13-205ENST00000397101 RAD54L2Q9Y4B4 1467 aa25.09■■□□□ 1.61
SEC13-205ENST00000397101 TDRD9Q8NDG6 1382 aaKnown RBP25.05■■□□□ 1.6
SEC13-205ENST00000397101 CLASP1Q7Z460 1538 aa25.04■■□□□ 1.6
SEC13-205ENST00000397101 SNAPC4Q5SXM2 1469 aa25.02■■□□□ 1.6
SEC13-205ENST00000397101 MAGI1Q96QZ7 1491 aaPredicted RBP25.01■■□□□ 1.59
SEC13-205ENST00000397101 SYNJ1O43426 1573 aa24.98■■□□□ 1.59
SEC13-205ENST00000397101 CHMP7Q8WUX9 453 aaPredicted RBP24.98■■□□□ 1.59
SEC13-205ENST00000397101 FGD5Q6ZNL6 1462 aa24.97■■□□□ 1.59
SEC13-205ENST00000397101 GRIN2BQ13224 1484 aa24.95■■□□□ 1.58
SEC13-205ENST00000397101 SYNJ2O15056 1496 aa24.91■■□□□ 1.58
SEC13-205ENST00000397101 CUX1P39880 1505 aa24.89■■□□□ 1.57
SEC13-205ENST00000397101 GAPVD1Q14C86 1478 aa24.78■■□□□ 1.56
SEC13-205ENST00000397101 ABCA10Q8WWZ4 1543 aa24.74■■□□□ 1.55
SEC13-205ENST00000397101 PBRM1Q86U86 1689 aa24.72■■□□□ 1.55
SEC13-205ENST00000397101 AEBP2Q6ZN18 517 aaPredicted RBP24.71■■□□□ 1.55
SEC13-205ENST00000397101 ABCA5Q8WWZ7 1642 aa24.68■■□□□ 1.54
SEC13-205ENST00000397101 GRIN2AQ12879 1464 aa24.61■■□□□ 1.53
SEC13-205ENST00000397101 NUP160Q12769 1436 aa24.59■■□□□ 1.53
SEC13-205ENST00000397101 WRNQ14191 1432 aaPredicted RBP eCLIP24.54■■□□□ 1.52
SEC13-205ENST00000397101 ERCC6L2Q5T890 1561 aa24.53■■□□□ 1.52
SEC13-205ENST00000397101 ADAMTS12P58397 1594 aa24.52■■□□□ 1.52
SEC13-205ENST00000397101 CEP170Q5SW79 1584 aa24.51■■□□□ 1.51
SEC13-205ENST00000397101 FHAD1B1AJZ9 1412 aa24.49■■□□□ 1.51
SEC13-205ENST00000397101 SHROOM2Q13796 1616 aa24.48■■□□□ 1.51
SEC13-205ENST00000397101 ERICH3Q5RHP9 1530 aa24.42■■□□□ 1.5
SEC13-205ENST00000397101 TOP2BQ02880 1626 aa24.41■■□□□ 1.5
SEC13-205ENST00000397101 BIVM-ERCC5R4GMW8 1640 aa24.4■■□□□ 1.5
SEC13-205ENST00000397101 PRG4Q92954 1404 aaPredicted RBP24.32■■□□□ 1.48
SEC13-205ENST00000397101 JPH4Q96JJ6 628 aa24.31■■□□□ 1.48
SEC13-205ENST00000397101 KIF13AQ9H1H9 1805 aa24.3■■□□□ 1.48
SEC13-205ENST00000397101 SUPT5HO00267 1087 aaKnown RBP24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms