RNA–Protein interactions for RNA: ENST00000395853.5

MSH5-205, Transcript of mutS homolog 5, humanhuman

TSL 2 BASIC

Gene MSH5, Length 2,704 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-205ENST00000395853 NISCHQ9Y2I1 1504 aa18.33■□□□□ 0.53
MSH5-205ENST00000395853 ABCC9O60706 1549 aa16.72■□□□□ 0.27
MSH5-205ENST00000395853 CCDC180Q9P1Z9 1646 aa16.62■□□□□ 0.25
MSH5-205ENST00000395853 PELP1Q8IZL8 1130 aaKnown RBP16.03■□□□□ 0.16
MSH5-205ENST00000395853 RB1CC1Q8TDY2 1594 aa15.92■□□□□ 0.14
MSH5-205ENST00000395853 DNAJC5BQ9UF47 199 aa15.89■□□□□ 0.13
MSH5-205ENST00000395853 MYT1Q01538 1121 aa15.78■□□□□ 0.12
MSH5-205ENST00000395853 NACADO15069 1562 aa15.77■□□□□ 0.12
MSH5-205ENST00000395853 MYO15BQ96JP2 1530 aa15.54■□□□□ 0.08
MSH5-205ENST00000395853 UNC13AQ9UPW8 1703 aa15.49■□□□□ 0.07
MSH5-205ENST00000395853 PABPN1Q86U42 306 aaKnown RBP eCLIP15.49■□□□□ 0.072e-6■■■□□ 15.7
MSH5-205ENST00000395853 DCAF8L2P0C7V8 631 aa15.43■□□□□ 0.06
MSH5-205ENST00000395853 BICRAQ9NZM4 1560 aa15.42■□□□□ 0.06
MSH5-205ENST00000395853 SHROOM4Q9ULL8 1493 aa15.33■□□□□ 0.05
MSH5-205ENST00000395853 DCAF1Q9Y4B6 1507 aa15.22■□□□□ 0.03
MSH5-205ENST00000395853 TTBK1Q5TCY1 1321 aaPredicted RBP15.17■□□□□ 0.02
MSH5-205ENST00000395853 CC2D2AQ9P2K1 1620 aa15.14■□□□□ 0.01
MSH5-205ENST00000395853 ZCCHC6Q5VYS8 1495 aaKnown RBP15.14■□□□□ 0.01
MSH5-205ENST00000395853 CECR2Q9BXF3 1484 aa15.14■□□□□ 0.01
MSH5-205ENST00000395853 EIF4G1Q04637 1599 aaKnown RBP15.06■□□□□ 0
MSH5-205ENST00000395853 SCRIBQ14160 1630 aa14.99□□□□□ -0.01
MSH5-205ENST00000395853 DNAJC5Q9H3Z4 198 aa14.87□□□□□ -0.03
MSH5-205ENST00000395853 HRCP23327 699 aa14.85□□□□□ -0.03
MSH5-205ENST00000395853 PRKCSHP14314 528 aaPredicted RBP14.75□□□□□ -0.05
MSH5-205ENST00000395853 CUX2O14529 1486 aa14.65□□□□□ -0.06
MSH5-205ENST00000395853 SCAF1Q9H7N4 1312 aaKnown RBP14.58□□□□□ -0.07
MSH5-205ENST00000395853 NCAPD3P42695 1498 aa14.55□□□□□ -0.08
MSH5-205ENST00000395853 ERICH6Q7L0X2 663 aa14.5□□□□□ -0.09
MSH5-205ENST00000395853 ERCC6Q03468 1493 aa14.49□□□□□ -0.09
MSH5-205ENST00000395853 BCL11AQ9H165 835 aa14.45□□□□□ -0.1
MSH5-205ENST00000395853 HMGXB3Q12766 1538 aa14.43□□□□□ -0.1
MSH5-205ENST00000395853 ATAD2BQ9ULI0 1458 aa14.43□□□□□ -0.1
MSH5-205ENST00000395853 SMARCA2P51531 1590 aa14.42□□□□□ -0.1
MSH5-205ENST00000395853 APLP2Q06481 763 aa14.41□□□□□ -0.1
MSH5-205ENST00000395853 PPARGC1BQ86YN6 1023 aaKnown RBP14.37□□□□□ -0.11
MSH5-205ENST00000395853 SMARCA4P51532 1647 aa14.34□□□□□ -0.11
MSH5-205ENST00000395853 NESP48681 1621 aa14.28□□□□□ -0.12
MSH5-205ENST00000395853 PEG3Q9GZU2 1588 aa14.27□□□□□ -0.12
MSH5-205ENST00000395853 THOC2Q8NI27 1593 aaKnown RBP14.26□□□□□ -0.13
MSH5-205ENST00000395853 BAZ1AQ9NRL2 1556 aaPredicted RBP14.26□□□□□ -0.13
MSH5-205ENST00000395853 BAZ1BQ9UIG0 1483 aaKnown RBP14.26□□□□□ -0.13
MSH5-205ENST00000395853 LAMC3Q9Y6N6 1575 aa14.26□□□□□ -0.13
MSH5-205ENST00000395853 FAM9AQ8IZU1 332 aaPredicted RBP14.25□□□□□ -0.13
MSH5-205ENST00000395853 SLC24A1O60721 1099 aa14.23□□□□□ -0.13
MSH5-205ENST00000395853 SUPT5HO00267 1087 aaKnown RBP14.18□□□□□ -0.14
MSH5-205ENST00000395853 PDS5BQ9NTI5 1447 aa14.18□□□□□ -0.14
MSH5-205ENST00000395853 CHIC1Q5VXU3 224 aa14.14□□□□□ -0.15
MSH5-205ENST00000395853 KIF21AQ7Z4S6 1674 aa14.13□□□□□ -0.15
MSH5-205ENST00000395853 CENPBP07199 599 aaPredicted RBP14.09□□□□□ -0.15
MSH5-205ENST00000395853 MROH2BQ7Z745 1585 aa14.07□□□□□ -0.16
MSH5-205ENST00000395853 CADPSQ9ULU8 1353 aa14.07□□□□□ -0.16
MSH5-205ENST00000395853 MRC2Q9UBG0 1479 aa14.05□□□□□ -0.16
MSH5-205ENST00000395853 WDR62O43379 1518 aa14.04□□□□□ -0.16
MSH5-205ENST00000395853 AEBP2Q6ZN18 517 aaPredicted RBP14.03□□□□□ -0.16
MSH5-205ENST00000395853 TRIM41Q8WV44 630 aa14□□□□□ -0.17
MSH5-205ENST00000395853 PCGF6Q9BYE7 350 aa13.97□□□□□ -0.17
MSH5-205ENST00000395853 ACIN1Q9UKV3 1341 aaKnown RBP13.94□□□□□ -0.18
MSH5-205ENST00000395853 CEP164Q9UPV0 1460 aa13.93□□□□□ -0.18
MSH5-205ENST00000395853 OSCARQ8IYS5 282 aa13.88□□□□□ -0.19
MSH5-205ENST00000395853 FANCD2Q9BXW9 1451 aa13.88□□□□□ -0.19
MSH5-205ENST00000395853 WIZO95785 1651 aa13.87□□□□□ -0.19
MSH5-205ENST00000395853 CFTRP13569 1480 aa13.86□□□□□ -0.19
MSH5-205ENST00000395853 GTF3C3Q9Y5Q9 886 aa13.85□□□□□ -0.19
MSH5-205ENST00000395853 NEUROD1Q13562 356 aa13.81□□□□□ -0.2
MSH5-205ENST00000395853 URB2Q14146 1524 aaKnown RBP13.77□□□□□ -0.21
MSH5-205ENST00000395853 ANP32EQ9BTT0 268 aa13.77□□□□□ -0.21
MSH5-205ENST00000395853 TOP2AP11388 1531 aaKnown RBP13.75□□□□□ -0.21
MSH5-205ENST00000395853 PRDM2Q13029 1718 aa13.72□□□□□ -0.21
MSH5-205ENST00000395853 DAXXQ9UER7 740 aaPredicted RBP13.72□□□□□ -0.21
MSH5-205ENST00000395853 RSF1Q96T23 1441 aaPredicted RBP13.71□□□□□ -0.22
MSH5-205ENST00000395853 ZEB1P37275 1124 aaPredicted RBP13.7□□□□□ -0.22
MSH5-205ENST00000395853 RIMBP3CA6NJZ7 1639 aa13.7□□□□□ -0.22
MSH5-205ENST00000395853 RIMBP3BA6NNM3 1639 aa13.7□□□□□ -0.22
MSH5-205ENST00000395853 RIMBP3Q9UFD9 1639 aa13.7□□□□□ -0.22
MSH5-205ENST00000395853 IFT140Q96RY7 1462 aa13.7□□□□□ -0.22
MSH5-205ENST00000395853 ARHGEF11O15085 1522 aa13.64□□□□□ -0.23
MSH5-205ENST00000395853 ABCC8Q09428 1581 aa13.64□□□□□ -0.23
MSH5-205ENST00000395853 ZNF608Q9ULD9 1512 aaPredicted RBP13.61□□□□□ -0.23
MSH5-205ENST00000395853 EIF5BO60841 1220 aaKnown RBP13.6□□□□□ -0.23
MSH5-205ENST00000395853 CSRNP3Q8WYN3 585 aa13.6□□□□□ -0.23
MSH5-205ENST00000395853 TOPBP1Q92547 1522 aa13.59□□□□□ -0.23
MSH5-205ENST00000395853 CCDC88BA6NC98 1476 aa13.56□□□□□ -0.24
MSH5-205ENST00000395853 EIF4G3O43432 1585 aaKnown RBP13.55□□□□□ -0.24
MSH5-205ENST00000395853 DNMBPQ6XZF7 1577 aa13.54□□□□□ -0.24
MSH5-205ENST00000395853 TARBP1Q13395 1621 aaKnown RBP13.5□□□□□ -0.25
MSH5-205ENST00000395853 CYB5RLQ6IPT4 315 aa13.5□□□□□ -0.25
MSH5-205ENST00000395853 CHD1O14646 1710 aa13.49□□□□□ -0.25
MSH5-205ENST00000395853 ARAP1Q96P48 1450 aa13.48□□□□□ -0.25
MSH5-205ENST00000395853 WDR97A6NE52 1622 aa13.45□□□□□ -0.26
MSH5-205ENST00000395853 AQRO60306 1485 aaKnown RBP eCLIP13.45□□□□□ -0.263e-9■■■■■ 36.3
MSH5-205ENST00000395853 POLA1P09884 1462 aaPredicted RBP13.43□□□□□ -0.26
MSH5-205ENST00000395853 TRHP20396 242 aaPredicted RBP13.42□□□□□ -0.26
MSH5-205ENST00000395853 UBE2Q2Q8WVN8 375 aa13.41□□□□□ -0.26
MSH5-205ENST00000395853 ANO8Q9HCE9 1232 aaPredicted RBP13.4□□□□□ -0.27
MSH5-205ENST00000395853 CLASP1Q7Z460 1538 aa13.38□□□□□ -0.27
MSH5-205ENST00000395853 FBLN2P98095 1184 aa13.37□□□□□ -0.27
MSH5-205ENST00000395853 SOGA1O94964 1423 aa13.37□□□□□ -0.27
MSH5-205ENST00000395853 SYNJ1O43426 1573 aa13.36□□□□□ -0.27
MSH5-205ENST00000395853 MAGI1Q96QZ7 1491 aaPredicted RBP13.35□□□□□ -0.27
MSH5-205ENST00000395853 RAD54L2Q9Y4B4 1467 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms