RNA–Protein interactions for RNA: ENST00000395134.3

PFDN6-205, Transcript of prefoldin subunit 6, humanhuman

TSL 2

Gene PFDN6, Length 805 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN6-205ENST00000395134 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.6□□□□□ -0.551e-20■■■■■ 215.3
PFDN6-205ENST00000395134 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.04□□□□□ -0.962e-7■■■■■ 40.2
PFDN6-205ENST00000395134 EFTUD2Q15029 972 aaKnown RBP eCLIP7.79□□□□□ -1.162e-7■■■■■ 32.6
PFDN6-205ENST00000395134 SF3A3Q12874 501 aaKnown RBP eCLIP8.94□□□□□ -0.982e-12■■■■■ 31.3
PFDN6-205ENST00000395134 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.51□□□□□ -1.212e-7■■■■■ 30
PFDN6-205ENST00000395134 DDX3XO00571 662 aaKnown RBP eCLIP9.64□□□□□ -0.874e-9■■■■□ 21.5
PFDN6-205ENST00000395134 GTF2F1P35269 517 aaKnown RBP eCLIP11.87□□□□□ -0.517e-12■■■■□ 21.5
PFDN6-205ENST00000395134 PUM1Q14671 1186 aaKnown RBP eCLIP9.04□□□□□ -0.961e-7■■■■□ 20.2
PFDN6-205ENST00000395134 PCBP2Q15366 365 aaKnown RBP eCLIP10.26□□□□□ -0.774e-7■■■■□ 19.9
PFDN6-205ENST00000395134 RPS3P23396 243 aaKnown RBP eCLIP7.8□□□□□ -1.166e-7■■■□□ 19.1
PFDN6-205ENST00000395134 SF3B4Q15427 424 aaKnown RBP eCLIP7.43□□□□□ -1.221e-14■■■□□ 18.9
PFDN6-205ENST00000395134 HLTFQ14527 1009 aaKnown RBP eCLIP10.81□□□□□ -0.684e-6■■■□□ 18.1
PFDN6-205ENST00000395134 PABPC4Q13310 644 aaKnown RBP eCLIP10.77□□□□□ -0.694e-9■■■□□ 17.6
PFDN6-205ENST00000395134 ZC3H11AO75152 810 aaKnown RBP eCLIP9.23□□□□□ -0.932e-7■■■□□ 16.9
PFDN6-205ENST00000395134 QKIQ96PU8 341 aaKnown RBP eCLIP8.02□□□□□ -1.133e-8■■■□□ 15.8
PFDN6-205ENST00000395134 LARP4Q71RC2 724 aaKnown RBP eCLIP8.77□□□□□ -1.018e-7■■■□□ 15.2
PFDN6-205ENST00000395134 PRPF4O43172 522 aaKnown RBP eCLIP8.62□□□□□ -1.037e-8■■■□□ 14.7
PFDN6-205ENST00000395134 DDX6P26196 483 aaKnown RBP eCLIP8.78□□□□□ -12e-8■■■□□ 14.6
PFDN6-205ENST00000395134 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.25□□□□□ -0.772e-8■■□□□ 14.5
PFDN6-205ENST00000395134 PPIGQ13427 754 aaKnown RBP eCLIP9.66□□□□□ -0.862e-6■■□□□ 13.2
PFDN6-205ENST00000395134 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.07□□□□□ -0.324e-8■■□□□ 13.1
PFDN6-205ENST00000395134 U2AF2P26368 475 aaKnown RBP eCLIP8.96□□□□□ -0.982e-8■■□□□ 12.2
PFDN6-205ENST00000395134 EIF3GO75821 320 aaKnown RBP eCLIP6.61□□□□□ -1.354e-7■■□□□ 11.7
PFDN6-205ENST00000395134 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.04□□□□□ -1.122e-8■■□□□ 11.6
PFDN6-205ENST00000395134 PTBP1P26599 531 aaKnown RBP eCLIP7.6□□□□□ -1.192e-6■□□□□ 10.8
PFDN6-205ENST00000395134 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.88□□□□□ -0.831e-6■□□□□ 10.6
PFDN6-205ENST00000395134 ZNF622Q969S3 477 aaKnown RBP eCLIP10.98□□□□□ -0.653e-9■□□□□ 10.4
PFDN6-205ENST00000395134 TROVE2P10155 538 aaKnown RBP eCLIP7.47□□□□□ -1.211e-6■□□□□ 10.1
PFDN6-205ENST00000395134 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.66□□□□□ -0.225e-21■□□□□ 10
PFDN6-205ENST00000395134 NCBP2P52298 156 aaKnown RBP eCLIP7.41□□□□□ -1.222e-6■□□□□ 9.7
PFDN6-205ENST00000395134 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.54□□□□□ -0.561e-7■□□□□ 9.6
PFDN6-205ENST00000395134 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.93■□□□□ 0.142e-9■□□□□ 9.3
PFDN6-205ENST00000395134 FUSP35637 526 aaKnown RBP eCLIP5.71□□□□□ -1.53e-7■□□□□ 8.8
PFDN6-205ENST00000395134 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.07□□□□□ -0.88e-12■□□□□ 8.5
Retrieved 34 of 34 RNA–protein pairs in 21.3 ms