RNA–Protein interactions for RNA: ENST00000383721.8

NEK4-202, Transcript of NIMA related kinase 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NEK4, Length 2,576 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-202ENST00000383721 NISCHQ9Y2I1 1504 aa30.01■■■□□ 2.39
NEK4-202ENST00000383721 CCDC180Q9P1Z9 1646 aa26.37■■□□□ 1.81
NEK4-202ENST00000383721 ABCC9O60706 1549 aa25.55■■□□□ 1.68
NEK4-202ENST00000383721 ZCCHC6Q5VYS8 1495 aaKnown RBP25.1■■□□□ 1.61
NEK4-202ENST00000383721 DCAF8L2P0C7V8 631 aa25.04■■□□□ 1.6
NEK4-202ENST00000383721 DCAF1Q9Y4B6 1507 aa24.75■■□□□ 1.55
NEK4-202ENST00000383721 NACADO15069 1562 aa24.7■■□□□ 1.55
NEK4-202ENST00000383721 MYO15BQ96JP2 1530 aa24.65■■□□□ 1.54
NEK4-202ENST00000383721 RB1CC1Q8TDY2 1594 aa24.64■■□□□ 1.53
NEK4-202ENST00000383721 SHROOM4Q9ULL8 1493 aa24.44■■□□□ 1.5
NEK4-202ENST00000383721 SCRIBQ14160 1630 aa24.27■■□□□ 1.48
NEK4-202ENST00000383721 UNC13AQ9UPW8 1703 aa24.15■■□□□ 1.46
NEK4-202ENST00000383721 PABPN1Q86U42 306 aaKnown RBP eCLIP24.01■■□□□ 1.43
NEK4-202ENST00000383721 SUPT5HO00267 1087 aaKnown RBP23.98■■□□□ 1.43
NEK4-202ENST00000383721 BICRAQ9NZM4 1560 aa23.96■■□□□ 1.43
NEK4-202ENST00000383721 CECR2Q9BXF3 1484 aa23.42■■□□□ 1.34
NEK4-202ENST00000383721 CHIC1Q5VXU3 224 aa23.38■■□□□ 1.33
NEK4-202ENST00000383721 EIF4G1Q04637 1599 aaKnown RBP23.27■■□□□ 1.32
NEK4-202ENST00000383721 MROH2BQ7Z745 1585 aa23.2■■□□□ 1.31
NEK4-202ENST00000383721 BAZ1AQ9NRL2 1556 aaPredicted RBP23.19■■□□□ 1.3
NEK4-202ENST00000383721 SMARCA4P51532 1647 aa23.19■■□□□ 1.3
NEK4-202ENST00000383721 DNAJC5BQ9UF47 199 aa23.1■■□□□ 1.29
NEK4-202ENST00000383721 RSF1Q96T23 1441 aaPredicted RBP23.09■■□□□ 1.29
NEK4-202ENST00000383721 CC2D2AQ9P2K1 1620 aa23.07■■□□□ 1.28
NEK4-202ENST00000383721 WIZO95785 1651 aa22.98■■□□□ 1.27
NEK4-202ENST00000383721 ATAD2BQ9ULI0 1458 aa22.96■■□□□ 1.27
NEK4-202ENST00000383721 PEG3Q9GZU2 1588 aa22.9■■□□□ 1.26
NEK4-202ENST00000383721 SMARCA2P51531 1590 aa22.88■■□□□ 1.25
NEK4-202ENST00000383721 NCAPD3P42695 1498 aa22.83■■□□□ 1.25
NEK4-202ENST00000383721 BAZ1BQ9UIG0 1483 aaKnown RBP22.79■■□□□ 1.24
NEK4-202ENST00000383721 HMGXB3Q12766 1538 aa22.73■■□□□ 1.23
NEK4-202ENST00000383721 HRCP23327 699 aa22.7■■□□□ 1.22
NEK4-202ENST00000383721 TOP2AP11388 1531 aaKnown RBP22.68■■□□□ 1.22
NEK4-202ENST00000383721 LOC105371045A0A1W2PR82 267 aa22.67■■□□□ 1.22
NEK4-202ENST00000383721 PCGF6Q9BYE7 350 aa22.64■■□□□ 1.22
NEK4-202ENST00000383721 CCDC88BA6NC98 1476 aa22.48■■□□□ 1.19
NEK4-202ENST00000383721 TRIM41Q8WV44 630 aa22.36■■□□□ 1.17
NEK4-202ENST00000383721 NESP48681 1621 aa22.27■■□□□ 1.16
NEK4-202ENST00000383721 TRIM26Q12899 539 aaPredicted RBP22.24■■□□□ 1.15
NEK4-202ENST00000383721 CADPSQ9ULU8 1353 aa22.22■■□□□ 1.15
NEK4-202ENST00000383721 PPARGC1BQ86YN6 1023 aaKnown RBP22.2■■□□□ 1.14
NEK4-202ENST00000383721 CFTRP13569 1480 aa22.18■■□□□ 1.14
NEK4-202ENST00000383721 FAM9AQ8IZU1 332 aaPredicted RBP22.15■■□□□ 1.14
NEK4-202ENST00000383721 LAMC3Q9Y6N6 1575 aa22.13■■□□□ 1.13
NEK4-202ENST00000383721 FANCD2Q9BXW9 1451 aa21.98■■□□□ 1.11
NEK4-202ENST00000383721 PDS5BQ9NTI5 1447 aa21.98■■□□□ 1.11
NEK4-202ENST00000383721 PRDM2Q13029 1718 aa21.97■■□□□ 1.11
NEK4-202ENST00000383721 KIF21AQ7Z4S6 1674 aa21.95■■□□□ 1.1
NEK4-202ENST00000383721 ERCC6Q03468 1493 aa21.93■■□□□ 1.1
NEK4-202ENST00000383721 EHMT2Q96KQ7 1210 aa21.93■■□□□ 1.1
NEK4-202ENST00000383721 CEP164Q9UPV0 1460 aa21.88■■□□□ 1.09
NEK4-202ENST00000383721 ABCC8Q09428 1581 aa21.86■■□□□ 1.09
NEK4-202ENST00000383721 URB2Q14146 1524 aaKnown RBP21.76■■□□□ 1.07
NEK4-202ENST00000383721 ZEB1P37275 1124 aaPredicted RBP21.75■■□□□ 1.07
NEK4-202ENST00000383721 MRC2Q9UBG0 1479 aa21.75■■□□□ 1.07
NEK4-202ENST00000383721 WRNQ14191 1432 aaPredicted RBP eCLIP21.73■■□□□ 1.07
NEK4-202ENST00000383721 THOC2Q8NI27 1593 aaKnown RBP21.73■■□□□ 1.07
NEK4-202ENST00000383721 CUX1P39880 1505 aa21.73■■□□□ 1.07
NEK4-202ENST00000383721 SYNJ1O43426 1573 aa21.69■■□□□ 1.06
NEK4-202ENST00000383721 TOPBP1Q92547 1522 aa21.68■■□□□ 1.06
NEK4-202ENST00000383721 DNMBPQ6XZF7 1577 aa21.66■■□□□ 1.06
NEK4-202ENST00000383721 WDR62O43379 1518 aa21.66■■□□□ 1.06
NEK4-202ENST00000383721 TOP2BQ02880 1626 aa21.6■■□□□ 1.05
NEK4-202ENST00000383721 BIVM-ERCC5R4GMW8 1640 aa21.58■■□□□ 1.05
NEK4-202ENST00000383721 FGD5Q6ZNL6 1462 aa21.57■■□□□ 1.04
NEK4-202ENST00000383721 POLA1P09884 1462 aaPredicted RBP21.55■■□□□ 1.04
NEK4-202ENST00000383721 SOGA1O94964 1423 aa21.51■■□□□ 1.03
NEK4-202ENST00000383721 CUX2O14529 1486 aa21.51■■□□□ 1.03
NEK4-202ENST00000383721 RAD54L2Q9Y4B4 1467 aa21.5■■□□□ 1.03
NEK4-202ENST00000383721 CEP162Q5TB80 1403 aa21.42■■□□□ 1.02
NEK4-202ENST00000383721 EEA1Q15075 1411 aa21.42■■□□□ 1.02
NEK4-202ENST00000383721 RUSC2Q8N2Y8 1516 aa21.41■■□□□ 1.02
NEK4-202ENST00000383721 TNIKQ9UKE5 1360 aa21.4■■□□□ 1.02
NEK4-202ENST00000383721 TARBP1Q13395 1621 aaKnown RBP21.4■■□□□ 1.02
NEK4-202ENST00000383721 CSRNP3Q8WYN3 585 aa21.4■■□□□ 1.02
NEK4-202ENST00000383721 IFT140Q96RY7 1462 aa21.38■■□□□ 1.01
NEK4-202ENST00000383721 ZNF608Q9ULD9 1512 aaPredicted RBP21.36■■□□□ 1.01
NEK4-202ENST00000383721 TDRD9Q8NDG6 1382 aaKnown RBP21.35■■□□□ 1.01
NEK4-202ENST00000383721 ABCA10Q8WWZ4 1543 aa21.33■■□□□ 1.01
NEK4-202ENST00000383721 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.33■■□□□ 1
NEK4-202ENST00000383721 WDR97A6NE52 1622 aa21.31■■□□□ 1
NEK4-202ENST00000383721 AQRO60306 1485 aaKnown RBP eCLIP21.3■■□□□ 13e-7■■■□□ 17
NEK4-202ENST00000383721 UBTFP17480 764 aaKnown RBP21.28■■□□□ 1
NEK4-202ENST00000383721 GOLGA3Q08378 1498 aa21.26■□□□□ 0.99
NEK4-202ENST00000383721 CCER1Q8TC90 406 aaPredicted RBP21.26■□□□□ 0.99
NEK4-202ENST00000383721 EIF4G3O43432 1585 aaKnown RBP21.24■□□□□ 0.99
NEK4-202ENST00000383721 TTBK1Q5TCY1 1321 aaPredicted RBP21.24■□□□□ 0.99
NEK4-202ENST00000383721 KIF27Q86VH2 1401 aa21.22■□□□□ 0.99
NEK4-202ENST00000383721 ABCA5Q8WWZ7 1642 aa21.21■□□□□ 0.99
NEK4-202ENST00000383721 GAPVD1Q14C86 1478 aa21.21■□□□□ 0.99
NEK4-202ENST00000383721 IGF1RP08069 1367 aa21.12■□□□□ 0.97
NEK4-202ENST00000383721 GRIN2BQ13224 1484 aa21.11■□□□□ 0.97
NEK4-202ENST00000383721 KIF21BO75037 1637 aa21.11■□□□□ 0.97
NEK4-202ENST00000383721 PBRM1Q86U86 1689 aa21.11■□□□□ 0.97
NEK4-202ENST00000383721 SNAPC4Q5SXM2 1469 aa21.07■□□□□ 0.96
NEK4-202ENST00000383721 ERICH3Q5RHP9 1530 aa21.06■□□□□ 0.96
NEK4-202ENST00000383721 CLIP1P30622 1438 aa21.02■□□□□ 0.96
NEK4-202ENST00000383721 CARMIL1Q5VZK9 1371 aa20.99■□□□□ 0.95
NEK4-202ENST00000383721 RAPGEF2Q9Y4G8 1499 aa20.99■□□□□ 0.95
NEK4-202ENST00000383721 MAGI1Q96QZ7 1491 aaPredicted RBP20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms