RNA–Protein interactions for RNA: ENST00000381323.7

FAM49A-201, Transcript of family with sequence similarity 49 member A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FAM49A, Length 4,670 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM49A-201ENST00000381323 NISCHQ9Y2I1 1504 aa18.19■□□□□ 0.5
FAM49A-201ENST00000381323 ABCC9O60706 1549 aa16.41■□□□□ 0.22
FAM49A-201ENST00000381323 DCAF8L2P0C7V8 631 aa16.19■□□□□ 0.18
FAM49A-201ENST00000381323 CCDC180Q9P1Z9 1646 aa16.07■□□□□ 0.16
FAM49A-201ENST00000381323 RB1CC1Q8TDY2 1594 aa15.51■□□□□ 0.07
FAM49A-201ENST00000381323 PABPN1Q86U42 306 aaKnown RBP eCLIP15.47■□□□□ 0.07
FAM49A-201ENST00000381323 NACADO15069 1562 aa15.36■□□□□ 0.05
FAM49A-201ENST00000381323 DNAJC5BQ9UF47 199 aa15.09■□□□□ 0.01
FAM49A-201ENST00000381323 ZCCHC6Q5VYS8 1495 aaKnown RBP15.03■□□□□ -0
FAM49A-201ENST00000381323 MYO15BQ96JP2 1530 aa15□□□□□ -0.01
FAM49A-201ENST00000381323 SCRIBQ14160 1630 aa14.94□□□□□ -0.02
FAM49A-201ENST00000381323 DCAF1Q9Y4B6 1507 aa14.87□□□□□ -0.03
FAM49A-201ENST00000381323 SHROOM4Q9ULL8 1493 aa14.77□□□□□ -0.05
FAM49A-201ENST00000381323 CECR2Q9BXF3 1484 aa14.73□□□□□ -0.05
FAM49A-201ENST00000381323 BICRAQ9NZM4 1560 aa14.72□□□□□ -0.05
FAM49A-201ENST00000381323 UNC13AQ9UPW8 1703 aa14.69□□□□□ -0.06
FAM49A-201ENST00000381323 CC2D2AQ9P2K1 1620 aa14.57□□□□□ -0.08
FAM49A-201ENST00000381323 EIF4G1Q04637 1599 aaKnown RBP14.57□□□□□ -0.08
FAM49A-201ENST00000381323 ERCC6Q03468 1493 aa14.36□□□□□ -0.11
FAM49A-201ENST00000381323 BAZ1BQ9UIG0 1483 aaKnown RBP14.24□□□□□ -0.13
FAM49A-201ENST00000381323 SMARCA2P51531 1590 aa14.22□□□□□ -0.13
FAM49A-201ENST00000381323 BAZ1AQ9NRL2 1556 aaPredicted RBP14.19□□□□□ -0.14
FAM49A-201ENST00000381323 ATAD2BQ9ULI0 1458 aa14.19□□□□□ -0.14
FAM49A-201ENST00000381323 NCAPD3P42695 1498 aa14.18□□□□□ -0.14
FAM49A-201ENST00000381323 SMARCA4P51532 1647 aa14.11□□□□□ -0.15
FAM49A-201ENST00000381323 PDS5BQ9NTI5 1447 aa14.04□□□□□ -0.16
FAM49A-201ENST00000381323 MROH2BQ7Z745 1585 aa14.01□□□□□ -0.17
FAM49A-201ENST00000381323 HMGXB3Q12766 1538 aa14.01□□□□□ -0.17
FAM49A-201ENST00000381323 NESP48681 1621 aa13.97□□□□□ -0.17
FAM49A-201ENST00000381323 SUPT5HO00267 1087 aaKnown RBP13.96□□□□□ -0.17
FAM49A-201ENST00000381323 CUX2O14529 1486 aa13.94□□□□□ -0.18
FAM49A-201ENST00000381323 DNAJC5Q9H3Z4 198 aa13.94□□□□□ -0.18
FAM49A-201ENST00000381323 CADPSQ9ULU8 1353 aa13.93□□□□□ -0.18
FAM49A-201ENST00000381323 RSF1Q96T23 1441 aaPredicted RBP13.85□□□□□ -0.19
FAM49A-201ENST00000381323 LAMC3Q9Y6N6 1575 aa13.83□□□□□ -0.19
FAM49A-201ENST00000381323 WIZO95785 1651 aa13.81□□□□□ -0.2
FAM49A-201ENST00000381323 CEP164Q9UPV0 1460 aa13.81□□□□□ -0.2
FAM49A-201ENST00000381323 TRIM41Q8WV44 630 aa13.8□□□□□ -0.2
FAM49A-201ENST00000381323 PEG3Q9GZU2 1588 aa13.79□□□□□ -0.2
FAM49A-201ENST00000381323 FBLN2P98095 1184 aa13.77□□□□□ -0.21
FAM49A-201ENST00000381323 FANCD2Q9BXW9 1451 aa13.76□□□□□ -0.21
FAM49A-201ENST00000381323 MRC2Q9UBG0 1479 aa13.75□□□□□ -0.21
FAM49A-201ENST00000381323 TOP2AP11388 1531 aaKnown RBP13.7□□□□□ -0.22
FAM49A-201ENST00000381323 OSCARQ8IYS5 282 aa13.69□□□□□ -0.22
FAM49A-201ENST00000381323 CFTRP13569 1480 aa13.64□□□□□ -0.23
FAM49A-201ENST00000381323 CCDC88BA6NC98 1476 aa13.61□□□□□ -0.23
FAM49A-201ENST00000381323 KIF21AQ7Z4S6 1674 aa13.6□□□□□ -0.23
FAM49A-201ENST00000381323 THOC2Q8NI27 1593 aaKnown RBP13.55□□□□□ -0.24
FAM49A-201ENST00000381323 CHMP7Q8WUX9 453 aaPredicted RBP13.55□□□□□ -0.24
FAM49A-201ENST00000381323 ABCC8Q09428 1581 aa13.52□□□□□ -0.25
FAM49A-201ENST00000381323 WDR62O43379 1518 aa13.51□□□□□ -0.25
FAM49A-201ENST00000381323 IFT140Q96RY7 1462 aa13.48□□□□□ -0.25
FAM49A-201ENST00000381323 TRHP20396 242 aaPredicted RBP13.47□□□□□ -0.25
FAM49A-201ENST00000381323 URB2Q14146 1524 aaKnown RBP13.46□□□□□ -0.26
FAM49A-201ENST00000381323 CYB5RLQ6IPT4 315 aa13.44□□□□□ -0.26
FAM49A-201ENST00000381323 SOGA1O94964 1423 aa13.44□□□□□ -0.26
FAM49A-201ENST00000381323 TDRD9Q8NDG6 1382 aaKnown RBP13.43□□□□□ -0.26
FAM49A-201ENST00000381323 TOPBP1Q92547 1522 aa13.42□□□□□ -0.26
FAM49A-201ENST00000381323 AQRO60306 1485 aaKnown RBP eCLIP13.38□□□□□ -0.27
FAM49A-201ENST00000381323 ZNF608Q9ULD9 1512 aaPredicted RBP13.35□□□□□ -0.27
FAM49A-201ENST00000381323 DNMBPQ6XZF7 1577 aa13.34□□□□□ -0.27
FAM49A-201ENST00000381323 RAD54L2Q9Y4B4 1467 aa13.32□□□□□ -0.28
FAM49A-201ENST00000381323 TTBK1Q5TCY1 1321 aaPredicted RBP13.3□□□□□ -0.28
FAM49A-201ENST00000381323 POLA1P09884 1462 aaPredicted RBP13.29□□□□□ -0.28
FAM49A-201ENST00000381323 FGD5Q6ZNL6 1462 aa13.29□□□□□ -0.28
FAM49A-201ENST00000381323 WRNQ14191 1432 aaPredicted RBP eCLIP13.28□□□□□ -0.28
FAM49A-201ENST00000381323 FAM9AQ8IZU1 332 aaPredicted RBP13.28□□□□□ -0.28
FAM49A-201ENST00000381323 NPM1P06748 294 aaKnown RBP eCLIP13.26□□□□□ -0.29
FAM49A-201ENST00000381323 GRIN2BQ13224 1484 aa13.23□□□□□ -0.29
FAM49A-201ENST00000381323 SNAPC4Q5SXM2 1469 aa13.21□□□□□ -0.29
FAM49A-201ENST00000381323 GAPVD1Q14C86 1478 aa13.21□□□□□ -0.29
FAM49A-201ENST00000381323 PRDM2Q13029 1718 aa13.2□□□□□ -0.3
FAM49A-201ENST00000381323 EIF4G3O43432 1585 aaKnown RBP13.18□□□□□ -0.3
FAM49A-201ENST00000381323 CUX1P39880 1505 aa13.15□□□□□ -0.3
FAM49A-201ENST00000381323 MAGI1Q96QZ7 1491 aaPredicted RBP13.14□□□□□ -0.31
FAM49A-201ENST00000381323 ARHGEF11O15085 1522 aa13.12□□□□□ -0.31
FAM49A-201ENST00000381323 SYNJ2O15056 1496 aa13.11□□□□□ -0.31
FAM49A-201ENST00000381323 SYNJ1O43426 1573 aa13.11□□□□□ -0.31
FAM49A-201ENST00000381323 AEBP2Q6ZN18 517 aaPredicted RBP13.1□□□□□ -0.31
FAM49A-201ENST00000381323 KIF27Q86VH2 1401 aa13.06□□□□□ -0.32
FAM49A-201ENST00000381323 JPH4Q96JJ6 628 aa13.06□□□□□ -0.32
FAM49A-201ENST00000381323 TARBP1Q13395 1621 aaKnown RBP13.06□□□□□ -0.32
FAM49A-201ENST00000381323 ABCA10Q8WWZ4 1543 aa13.05□□□□□ -0.32
FAM49A-201ENST00000381323 FHAD1B1AJZ9 1412 aa13.04□□□□□ -0.32
FAM49A-201ENST00000381323 RIMBP3CA6NJZ7 1639 aa13.04□□□□□ -0.32
FAM49A-201ENST00000381323 RIMBP3BA6NNM3 1639 aa13.04□□□□□ -0.32
FAM49A-201ENST00000381323 RIMBP3Q9UFD9 1639 aa13.04□□□□□ -0.32
FAM49A-201ENST00000381323 RANGAP1P46060 587 aaPredicted RBP13.02□□□□□ -0.33
FAM49A-201ENST00000381323 CHD1O14646 1710 aa13.01□□□□□ -0.33
FAM49A-201ENST00000381323 WDR97A6NE52 1622 aa13□□□□□ -0.33
FAM49A-201ENST00000381323 EHMT2Q96KQ7 1210 aa12.98□□□□□ -0.33
FAM49A-201ENST00000381323 GRIN2AQ12879 1464 aa12.98□□□□□ -0.33
FAM49A-201ENST00000381323 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.97□□□□□ -0.33
FAM49A-201ENST00000381323 HNRNPUL2Q1KMD3 747 aaKnown RBP12.97□□□□□ -0.33
FAM49A-201ENST00000381323 ARAP1Q96P48 1450 aa12.96□□□□□ -0.34
FAM49A-201ENST00000381323 CARMIL1Q5VZK9 1371 aa12.95□□□□□ -0.34
FAM49A-201ENST00000381323 PRG4Q92954 1404 aaPredicted RBP12.95□□□□□ -0.34
FAM49A-201ENST00000381323 TOP2BQ02880 1626 aa12.95□□□□□ -0.34
FAM49A-201ENST00000381323 FAM69CQ0P6D2 419 aa12.93□□□□□ -0.34
FAM49A-201ENST00000381323 CARMIL2Q6F5E8 1435 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms