RNA–Protein interactions for RNA: ENST00000380221.7

TRAPPC10-202, Transcript of trafficking protein particle complex 10, humanhuman

TSL 1 (best) BASIC

Gene TRAPPC10, Length 1,763 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC10-202ENST00000380221 DDX3XO00571 662 aaKnown RBP eCLIP29.52■■■□□ 2.323e-16■■■■■ 51.2
TRAPPC10-202ENST00000380221 EFTUD2Q15029 972 aaKnown RBP eCLIP27.82■■■□□ 2.042e-15■■■□□ 15.2
TRAPPC10-202ENST00000380221 HNRNPUQ00839 825 aaKnown RBP eCLIP36.92■■■■□ 3.53e-10■■□□□ 11.7
TRAPPC10-202ENST00000380221 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP25.19■■□□□ 1.622e-9■■■□□ 17.5
TRAPPC10-202ENST00000380221 FMR1Q06787 632 aaKnown RBP eCLIP32.3■■■□□ 2.761e-8■■■■■ 30.9
TRAPPC10-202ENST00000380221 UTP3Q9NQZ2 479 aaKnown RBP eCLIP29.93■■■□□ 2.381e-8■■■■■ 38.5
TRAPPC10-202ENST00000380221 MATR3P43243 847 aaKnown RBP eCLIP30.27■■■□□ 2.442e-8■■■■■ 29.6
TRAPPC10-202ENST00000380221 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP36.23■■■■□ 3.392e-8■□□□□ 9.3
TRAPPC10-202ENST00000380221 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP22.51■■□□□ 1.193e-8■■■■■ 32.6
TRAPPC10-202ENST00000380221 TIA1P31483 386 aaKnown RBP eCLIP26.38■■□□□ 1.815e-8■■■■■ 26.8
TRAPPC10-202ENST00000380221 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP30.07■■■□□ 2.45e-8■□□□□ 10.3
TRAPPC10-202ENST00000380221 SF3B4Q15427 424 aaKnown RBP eCLIP24.53■■□□□ 1.526e-8■■■■□ 19.5
TRAPPC10-202ENST00000380221 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP23.32■■□□□ 1.327e-8■■■□□ 18.9
TRAPPC10-202ENST00000380221 KHSRPQ92945 711 aaKnown RBP eCLIP29.11■■■□□ 2.251e-7■■□□□ 14
TRAPPC10-202ENST00000380221 BUD13Q9BRD0 619 aaKnown RBP eCLIP29.66■■■□□ 2.341e-7■■□□□ 12.9
TRAPPC10-202ENST00000380221 TARDBPQ13148 414 aaKnown RBP eCLIP26.06■■□□□ 1.761e-7■■■■■ 27.6
TRAPPC10-202ENST00000380221 NIPBLQ6KC79 2804 aaeCLIP21.53■■□□□ 1.042e-7■■■□□ 16.1
TRAPPC10-202ENST00000380221 EIF4G2P78344 907 aaKnown RBP eCLIP39.18■■■■□ 3.863e-7■■■■■ 29.3
TRAPPC10-202ENST00000380221 RBM22Q9NW64 420 aaKnown RBP eCLIP28.25■■■□□ 2.115e-7■□□□□ 8.4
TRAPPC10-202ENST00000380221 HNRNPMP52272 730 aaKnown RBP eCLIP41.83■■■■■ 4.295e-7■■■■□ 20.5
TRAPPC10-202ENST00000380221 RBM15Q96T37 977 aaKnown RBP eCLIP28.13■■■□□ 2.099e-7■■■■□ 22.2
TRAPPC10-202ENST00000380221 AQRO60306 1485 aaKnown RBP eCLIP45.51■■■■■ 4.889e-7■■□□□ 12
TRAPPC10-202ENST00000380221 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP27.83■■■□□ 2.051e-6■■■■■ 30
TRAPPC10-202ENST00000380221 NONOQ15233 471 aaKnown RBP eCLIP31.66■■■□□ 2.661e-6■■■□□ 18.4
TRAPPC10-202ENST00000380221 PPIL4Q8WUA2 492 aaKnown RBP eCLIP33.75■■■□□ 2.992e-6■■■■□ 21.2
TRAPPC10-202ENST00000380221 GTF2F1P35269 517 aaKnown RBP eCLIP29.22■■■□□ 2.272e-6■■■■□ 26
TRAPPC10-202ENST00000380221 SAFB2Q14151 953 aaKnown RBP eCLIP38.67■■■■□ 3.782e-6■■■□□ 17.9
TRAPPC10-202ENST00000380221 DDX24Q9GZR7 859 aaKnown RBP eCLIP33.47■■■□□ 2.953e-6■□□□□ 9
TRAPPC10-202ENST00000380221 SAFBQ15424 915 aaKnown RBP eCLIP31.88■■■□□ 2.693e-6■■■□□ 19.1
TRAPPC10-202ENST00000380221 AARSP49588 968 aaKnown RBP eCLIP29.59■■■□□ 2.333e-6■■■■■ 61.8
TRAPPC10-202ENST00000380221 HLTFQ14527 1009 aaKnown RBP eCLIP28.47■■■□□ 2.154e-6■□□□□ 10.4
TRAPPC10-202ENST00000380221 SLTMQ9NWH9 1034 aaKnown RBP eCLIP28.75■■■□□ 2.195e-6■□□□□ 8.4
TRAPPC10-202ENST00000380221 SF3B1O75533 1304 aaKnown RBP eCLIP29.46■■■□□ 2.318e-6■■■■■ 107
Retrieved 33 of 33 RNA–protein pairs in 9.3 ms