RNA–Protein interactions for RNA: ENST00000378600.7

DDB2-202, Transcript of damage specific DNA binding protein 2, humanhuman

TSL 1 (best) BASIC

Gene DDB2, Length 717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB2-202ENST00000378600 RBM15Q96T37 977 aaKnown RBP eCLIP11.41□□□□□ -0.584e-17■■■■□ 24.1
DDB2-202ENST00000378600 PTBP1P26599 531 aaKnown RBP eCLIP9.01□□□□□ -0.974e-11■■□□□ 13.1
DDB2-202ENST00000378600 AATFQ9NY61 560 aaKnown RBP eCLIP13.75□□□□□ -0.213e-10■■■■□ 23.7
DDB2-202ENST00000378600 KHSRPQ92945 711 aaKnown RBP eCLIP11.95□□□□□ -0.55e-10■■□□□ 14
DDB2-202ENST00000378600 MATR3P43243 847 aaKnown RBP eCLIP12.43□□□□□ -0.422e-9■■■■■ 33.8
DDB2-202ENST00000378600 HNRNPMP52272 730 aaKnown RBP eCLIP17.61■□□□□ 0.412e-9■■□□□ 11.6
DDB2-202ENST00000378600 SRSF1Q07955 248 aaKnown RBP eCLIP10.29□□□□□ -0.763e-9■■■■■ 37.2
DDB2-202ENST00000378600 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.07□□□□□ -0.483e-9■■■■■ 197.7
DDB2-202ENST00000378600 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.91□□□□□ -0.51e-8■■■□□ 15.5
DDB2-202ENST00000378600 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.5□□□□□ -0.892e-8■□□□□ 10.1
DDB2-202ENST00000378600 PCBP2Q15366 365 aaKnown RBP eCLIP10.85□□□□□ -0.672e-8■□□□□ 8.6
DDB2-202ENST00000378600 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.7□□□□□ -0.386e-8■■■■■ 29.1
DDB2-202ENST00000378600 SRSF9Q13242 221 aaKnown RBP eCLIP7□□□□□ -1.297e-8■■□□□ 12.7
DDB2-202ENST00000378600 AQRO60306 1485 aaKnown RBP eCLIP19.53■□□□□ 0.721e-7■■■■■ 29.2
DDB2-202ENST00000378600 SF3B4Q15427 424 aaKnown RBP eCLIP10.37□□□□□ -0.752e-7■■■■□ 24.8
DDB2-202ENST00000378600 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.3■□□□□ 0.043e-7■□□□□ 10.1
DDB2-202ENST00000378600 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.11■□□□□ 0.333e-7■■■□□ 18.8
DDB2-202ENST00000378600 PPIGQ13427 754 aaKnown RBP eCLIP12.78□□□□□ -0.365e-7■■■□□ 15.7
DDB2-202ENST00000378600 EFTUD2Q15029 972 aaKnown RBP eCLIP10.94□□□□□ -0.666e-7■■■■□ 20.4
DDB2-202ENST00000378600 U2AF2P26368 475 aaKnown RBP eCLIP12.86□□□□□ -0.351e-6■■□□□ 12.7
DDB2-202ENST00000378600 RBM5P52756 815 aaKnown RBP eCLIP13.9□□□□□ -0.181e-6■■■■□ 26.4
DDB2-202ENST00000378600 TAF15Q92804 592 aaKnown RBP eCLIP9.04□□□□□ -0.961e-6■□□□□ 9.1
DDB2-202ENST00000378600 ZNF622Q969S3 477 aaKnown RBP eCLIP14.44□□□□□ -0.12e-6■□□□□ 9.4
DDB2-202ENST00000378600 SF3A3Q12874 501 aaKnown RBP eCLIP10.3□□□□□ -0.762e-6■■□□□ 12.3
DDB2-202ENST00000378600 ILF3Q12906 894 aaKnown RBP eCLIP11.27□□□□□ -0.613e-6■■■■□ 26.5
DDB2-202ENST00000378600 U2AF1Q01081 240 aaKnown RBP eCLIP15.16■□□□□ 0.023e-6■■■■□ 20.8
DDB2-202ENST00000378600 PRPF4O43172 522 aaKnown RBP eCLIP10.86□□□□□ -0.673e-6■■□□□ 12
DDB2-202ENST00000378600 XRCC6P12956 609 aaKnown RBP eCLIP12.74□□□□□ -0.374e-6■■■■□ 25.4
DDB2-202ENST00000378600 PCBP1Q15365 356 aaKnown RBP eCLIP12.65□□□□□ -0.389e-6■■■□□ 18.2
Retrieved 29 of 29 RNA–protein pairs in 23.6 ms