RNA–Protein interactions for RNA: ENST00000373243.6

NCDN-202, Transcript of neurochondrin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NCDN, Length 3,683 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCDN-202ENST00000373243 NISCHQ9Y2I1 1504 aa22.64■■□□□ 1.21
NCDN-202ENST00000373243 SHROOM4Q9ULL8 1493 aa20.79■□□□□ 0.92
NCDN-202ENST00000373243 SUPT5HO00267 1087 aaKnown RBP20.76■□□□□ 0.91
NCDN-202ENST00000373243 DCAF8L2P0C7V8 631 aa20.73■□□□□ 0.91
NCDN-202ENST00000373243 PELP1Q8IZL8 1130 aaKnown RBP20.09■□□□□ 0.81
NCDN-202ENST00000373243 PCGF6Q9BYE7 350 aa19.85■□□□□ 0.77
NCDN-202ENST00000373243 EHMT2Q96KQ7 1210 aa19.71■□□□□ 0.75
NCDN-202ENST00000373243 HRCP23327 699 aa19.68■□□□□ 0.74
NCDN-202ENST00000373243 PPARGC1BQ86YN6 1023 aaKnown RBP19.57■□□□□ 0.72
NCDN-202ENST00000373243 MYT1Q01538 1121 aa19.5■□□□□ 0.71
NCDN-202ENST00000373243 CHIC1Q5VXU3 224 aa19.47■□□□□ 0.71
NCDN-202ENST00000373243 FAM9AQ8IZU1 332 aaPredicted RBP19.42■□□□□ 0.7
NCDN-202ENST00000373243 LOC105371045A0A1W2PR82 267 aa19.38■□□□□ 0.69
NCDN-202ENST00000373243 SCAF1Q9H7N4 1312 aaKnown RBP19.11■□□□□ 0.65
NCDN-202ENST00000373243 TTBK1Q5TCY1 1321 aaPredicted RBP19.06■□□□□ 0.64
NCDN-202ENST00000373243 TRIM41Q8WV44 630 aa19.04■□□□□ 0.64
NCDN-202ENST00000373243 ABCC9O60706 1549 aa18.95■□□□□ 0.62
NCDN-202ENST00000373243 MYO15BQ96JP2 1530 aa18.94■□□□□ 0.62
NCDN-202ENST00000373243 ZCCHC6Q5VYS8 1495 aaKnown RBP18.93■□□□□ 0.62
NCDN-202ENST00000373243 TRIM26Q12899 539 aaPredicted RBP18.93■□□□□ 0.62
NCDN-202ENST00000373243 CCDC180Q9P1Z9 1646 aa18.92■□□□□ 0.62
NCDN-202ENST00000373243 ZEB1P37275 1124 aaPredicted RBP18.69■□□□□ 0.58
NCDN-202ENST00000373243 CCER1Q8TC90 406 aaPredicted RBP18.69■□□□□ 0.58
NCDN-202ENST00000373243 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.53■□□□□ 0.56
NCDN-202ENST00000373243 RANGAP1P46060 587 aaPredicted RBP18.52■□□□□ 0.56
NCDN-202ENST00000373243 GTF3C3Q9Y5Q9 886 aa18.52■□□□□ 0.56
NCDN-202ENST00000373243 SCRIBQ14160 1630 aa18.43■□□□□ 0.54
NCDN-202ENST00000373243 ACIN1Q9UKV3 1341 aaKnown RBP18.42■□□□□ 0.54
NCDN-202ENST00000373243 NEUROD1Q13562 356 aa18.41■□□□□ 0.54
NCDN-202ENST00000373243 UBTFP17480 764 aaKnown RBP18.41■□□□□ 0.54
NCDN-202ENST00000373243 PABPN1Q86U42 306 aaKnown RBP eCLIP18.4■□□□□ 0.54
NCDN-202ENST00000373243 YTHDC1Q96MU7 727 aaKnown RBP18.39■□□□□ 0.54
NCDN-202ENST00000373243 DCAF1Q9Y4B6 1507 aa18.37■□□□□ 0.53
NCDN-202ENST00000373243 BCL11AQ9H165 835 aa18.35■□□□□ 0.53
NCDN-202ENST00000373243 CENPBP07199 599 aaPredicted RBP18.32■□□□□ 0.52
NCDN-202ENST00000373243 APLP2Q06481 763 aa18.25■□□□□ 0.51
NCDN-202ENST00000373243 HNRNPUL2Q1KMD3 747 aaKnown RBP18.17■□□□□ 0.5
NCDN-202ENST00000373243 DIEXFQ68CQ4 756 aaKnown RBP18.17■□□□□ 0.5
NCDN-202ENST00000373243 PRKCSHP14314 528 aaPredicted RBP18.1■□□□□ 0.49
NCDN-202ENST00000373243 RSF1Q96T23 1441 aaPredicted RBP18.04■□□□□ 0.48
NCDN-202ENST00000373243 CECR2Q9BXF3 1484 aa17.98■□□□□ 0.47
NCDN-202ENST00000373243 NACADO15069 1562 aa17.9■□□□□ 0.46
NCDN-202ENST00000373243 ITGAEP38570 1179 aa17.89■□□□□ 0.45
NCDN-202ENST00000373243 RB1CC1Q8TDY2 1594 aa17.83■□□□□ 0.45
NCDN-202ENST00000373243 ATP1B4Q9UN42 357 aaPredicted RBP17.81■□□□□ 0.44
NCDN-202ENST00000373243 ANP32EQ9BTT0 268 aa17.79■□□□□ 0.44
NCDN-202ENST00000373243 CSRNP3Q8WYN3 585 aa17.78■□□□□ 0.44
NCDN-202ENST00000373243 ZNF316A6NFI3 1004 aaPredicted RBP17.78■□□□□ 0.44
NCDN-202ENST00000373243 MROH2BQ7Z745 1585 aa17.73■□□□□ 0.43
NCDN-202ENST00000373243 ERICH6Q7L0X2 663 aa17.71■□□□□ 0.43
NCDN-202ENST00000373243 MIER1Q8N108 512 aa17.61■□□□□ 0.41
NCDN-202ENST00000373243 WIZO95785 1651 aa17.56■□□□□ 0.4
NCDN-202ENST00000373243 CEP162Q5TB80 1403 aa17.54■□□□□ 0.4
NCDN-202ENST00000373243 BCANQ96GW7 911 aa17.49■□□□□ 0.39
NCDN-202ENST00000373243 SOGA1O94964 1423 aa17.48■□□□□ 0.39
NCDN-202ENST00000373243 ABCC8Q09428 1581 aa17.42■□□□□ 0.38
NCDN-202ENST00000373243 BAZ1AQ9NRL2 1556 aaPredicted RBP17.42■□□□□ 0.38
NCDN-202ENST00000373243 CCDC88BA6NC98 1476 aa17.41■□□□□ 0.38
NCDN-202ENST00000373243 FAM50AQ14320 339 aaKnown RBP17.38■□□□□ 0.37
NCDN-202ENST00000373243 NEFLP07196 543 aa17.36■□□□□ 0.37
NCDN-202ENST00000373243 TSHZ2Q9NRE2 1034 aa17.35■□□□□ 0.37
NCDN-202ENST00000373243 TNIKQ9UKE5 1360 aa17.33■□□□□ 0.37
NCDN-202ENST00000373243 P3H3Q8IVL6 736 aa17.33■□□□□ 0.36
NCDN-202ENST00000373243 CLIP1P30622 1438 aa17.32■□□□□ 0.36
NCDN-202ENST00000373243 CNGB1Q14028 1251 aaPredicted RBP17.3■□□□□ 0.36
NCDN-202ENST00000373243 RUSC2Q8N2Y8 1516 aa17.27■□□□□ 0.35
NCDN-202ENST00000373243 SUPT16HQ9Y5B9 1047 aaKnown RBP17.26■□□□□ 0.35
NCDN-202ENST00000373243 HIRIP3Q9BW71 556 aaPredicted RBP17.24■□□□□ 0.35
NCDN-202ENST00000373243 SMARCA4P51532 1647 aa17.24■□□□□ 0.35
NCDN-202ENST00000373243 GOLGA3Q08378 1498 aa17.23■□□□□ 0.35
NCDN-202ENST00000373243 WRNQ14191 1432 aaPredicted RBP eCLIP17.23■□□□□ 0.35
NCDN-202ENST00000373243 ANO8Q9HCE9 1232 aaPredicted RBP17.22■□□□□ 0.35
NCDN-202ENST00000373243 DDX10Q13206 875 aaKnown RBP17.2■□□□□ 0.34
NCDN-202ENST00000373243 BAZ1BQ9UIG0 1483 aaKnown RBP17.19■□□□□ 0.34
NCDN-202ENST00000373243 BICRAQ9NZM4 1560 aa17.16■□□□□ 0.34
NCDN-202ENST00000373243 UNC13AQ9UPW8 1703 aa17.16■□□□□ 0.34
NCDN-202ENST00000373243 EEA1Q15075 1411 aa17.13■□□□□ 0.33
NCDN-202ENST00000373243 FKBP8Q14318 412 aa17.12■□□□□ 0.33
NCDN-202ENST00000373243 TOP2AP11388 1531 aaKnown RBP17.12■□□□□ 0.33
NCDN-202ENST00000373243 POLR3GLQ9BT43 218 aa17.11■□□□□ 0.33
NCDN-202ENST00000373243 TRIM52Q96A61 297 aa17.1■□□□□ 0.33
NCDN-202ENST00000373243 KANK4Q5T7N3 995 aaPredicted RBP17.09■□□□□ 0.33
NCDN-202ENST00000373243 CCDC136Q96JN2 1154 aa17.09■□□□□ 0.33
NCDN-202ENST00000373243 ATAD2BQ9ULI0 1458 aa17.09■□□□□ 0.33
NCDN-202ENST00000373243 CEP164Q9UPV0 1460 aa17.06■□□□□ 0.32
NCDN-202ENST00000373243 ANP32CO43423 234 aa17.04■□□□□ 0.32
NCDN-202ENST00000373243 SMARCA2P51531 1590 aa17.03■□□□□ 0.32
NCDN-202ENST00000373243 ARID3CA6NKF2 412 aa17.02■□□□□ 0.31
NCDN-202ENST00000373243 SIN3AQ96ST3 1273 aa17.01■□□□□ 0.31
NCDN-202ENST00000373243 VPS8Q8N3P4 1428 aa16.98■□□□□ 0.31
NCDN-202ENST00000373243 KCNH8Q96L42 1107 aa16.98■□□□□ 0.31
NCDN-202ENST00000373243 RBM19Q9Y4C8 960 aaKnown RBP16.97■□□□□ 0.31
NCDN-202ENST00000373243 IRX6P78412 446 aaPredicted RBP16.94■□□□□ 0.3
NCDN-202ENST00000373243 SALL2Q9Y467 1007 aaPredicted RBP16.93■□□□□ 0.3
NCDN-202ENST00000373243 RAPGEF2Q9Y4G8 1499 aa16.93■□□□□ 0.3
NCDN-202ENST00000373243 CLSPNQ9HAW4 1339 aa16.92■□□□□ 0.3
NCDN-202ENST00000373243 DEKP35659 375 aaKnown RBP16.91■□□□□ 0.3
NCDN-202ENST00000373243 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.91■□□□□ 0.3
NCDN-202ENST00000373243 DNAJC5BQ9UF47 199 aa16.89■□□□□ 0.29
NCDN-202ENST00000373243 RTN4Q9NQC3 1192 aaKnown RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms