RNA–Protein interactions for RNA: ENST00000372417.1

YIPF3-201, Transcript of Yip1 domain family member 3, humanhuman

TSL 2

Gene YIPF3, Length 406 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF3-201ENST00000372417 NISCHQ9Y2I1 1504 aa20.85■□□□□ 0.93
YIPF3-201ENST00000372417 ABCC9O60706 1549 aa19.76■□□□□ 0.75
YIPF3-201ENST00000372417 CCDC180Q9P1Z9 1646 aa19.19■□□□□ 0.66
YIPF3-201ENST00000372417 DNAJC5BQ9UF47 199 aa19.12■□□□□ 0.65
YIPF3-201ENST00000372417 RB1CC1Q8TDY2 1594 aa18.56■□□□□ 0.56
YIPF3-201ENST00000372417 UNC13AQ9UPW8 1703 aa18.3■□□□□ 0.52
YIPF3-201ENST00000372417 NACADO15069 1562 aa18.22■□□□□ 0.51
YIPF3-201ENST00000372417 PABPN1Q86U42 306 aaKnown RBP eCLIP18.21■□□□□ 0.51
YIPF3-201ENST00000372417 DNAJC5Q9H3Z4 198 aa18.14■□□□□ 0.49
YIPF3-201ENST00000372417 BICRAQ9NZM4 1560 aa18.03■□□□□ 0.48
YIPF3-201ENST00000372417 CC2D2AQ9P2K1 1620 aa17.9■□□□□ 0.46
YIPF3-201ENST00000372417 CECR2Q9BXF3 1484 aa17.89■□□□□ 0.45
YIPF3-201ENST00000372417 DCAF8L2P0C7V8 631 aa17.83■□□□□ 0.44
YIPF3-201ENST00000372417 SHROOM4Q9ULL8 1493 aa17.71■□□□□ 0.43
YIPF3-201ENST00000372417 MYO15BQ96JP2 1530 aa17.69■□□□□ 0.42
YIPF3-201ENST00000372417 EIF4G1Q04637 1599 aaKnown RBP17.65■□□□□ 0.42
YIPF3-201ENST00000372417 CUX2O14529 1486 aa17.39■□□□□ 0.37
YIPF3-201ENST00000372417 SCRIBQ14160 1630 aa17.37■□□□□ 0.37
YIPF3-201ENST00000372417 DCAF1Q9Y4B6 1507 aa17.19■□□□□ 0.34
YIPF3-201ENST00000372417 ERCC6Q03468 1493 aa17.15■□□□□ 0.34
YIPF3-201ENST00000372417 ZCCHC6Q5VYS8 1495 aaKnown RBP17.12■□□□□ 0.33
YIPF3-201ENST00000372417 TRIM41Q8WV44 630 aa17.05■□□□□ 0.32
YIPF3-201ENST00000372417 THOC2Q8NI27 1593 aaKnown RBP16.85■□□□□ 0.29
YIPF3-201ENST00000372417 NESP48681 1621 aa16.77■□□□□ 0.27
YIPF3-201ENST00000372417 NCAPD3P42695 1498 aa16.75■□□□□ 0.27
YIPF3-201ENST00000372417 KIF21AQ7Z4S6 1674 aa16.69■□□□□ 0.26
YIPF3-201ENST00000372417 SMARCA2P51531 1590 aa16.66■□□□□ 0.26
YIPF3-201ENST00000372417 HMGXB3Q12766 1538 aa16.65■□□□□ 0.26
YIPF3-201ENST00000372417 ATAD2BQ9ULI0 1458 aa16.61■□□□□ 0.25
YIPF3-201ENST00000372417 LAMC3Q9Y6N6 1575 aa16.6■□□□□ 0.25
YIPF3-201ENST00000372417 BAZ1AQ9NRL2 1556 aaPredicted RBP16.58■□□□□ 0.24
YIPF3-201ENST00000372417 SMARCA4P51532 1647 aa16.5■□□□□ 0.23
YIPF3-201ENST00000372417 PDS5BQ9NTI5 1447 aa16.45■□□□□ 0.22
YIPF3-201ENST00000372417 BAZ1BQ9UIG0 1483 aaKnown RBP16.45■□□□□ 0.22
YIPF3-201ENST00000372417 RIMBP3CA6NJZ7 1639 aa16.4■□□□□ 0.22
YIPF3-201ENST00000372417 RIMBP3BA6NNM3 1639 aa16.4■□□□□ 0.22
YIPF3-201ENST00000372417 RIMBP3Q9UFD9 1639 aa16.4■□□□□ 0.22
YIPF3-201ENST00000372417 WDR62O43379 1518 aa16.4■□□□□ 0.22
YIPF3-201ENST00000372417 MRC2Q9UBG0 1479 aa16.38■□□□□ 0.21
YIPF3-201ENST00000372417 OSCARQ8IYS5 282 aa16.37■□□□□ 0.21
YIPF3-201ENST00000372417 PEG3Q9GZU2 1588 aa16.32■□□□□ 0.2
YIPF3-201ENST00000372417 AEBP2Q6ZN18 517 aaPredicted RBP16.24■□□□□ 0.19
YIPF3-201ENST00000372417 ARHGEF11O15085 1522 aa16.2■□□□□ 0.18
YIPF3-201ENST00000372417 CADPSQ9ULU8 1353 aa16.19■□□□□ 0.18
YIPF3-201ENST00000372417 CEP164Q9UPV0 1460 aa16.17■□□□□ 0.18
YIPF3-201ENST00000372417 TRHP20396 242 aaPredicted RBP16.13■□□□□ 0.17
YIPF3-201ENST00000372417 FANCD2Q9BXW9 1451 aa16.06■□□□□ 0.16
YIPF3-201ENST00000372417 MROH2BQ7Z745 1585 aa16.04■□□□□ 0.16
YIPF3-201ENST00000372417 CYB5RLQ6IPT4 315 aa16.03■□□□□ 0.16
YIPF3-201ENST00000372417 URB2Q14146 1524 aaKnown RBP15.99■□□□□ 0.15
YIPF3-201ENST00000372417 ARAP1Q96P48 1450 aa15.97■□□□□ 0.15
YIPF3-201ENST00000372417 CHD1O14646 1710 aa15.97■□□□□ 0.15
YIPF3-201ENST00000372417 PRDM2Q13029 1718 aa15.94■□□□□ 0.14
YIPF3-201ENST00000372417 WIZO95785 1651 aa15.9■□□□□ 0.14
YIPF3-201ENST00000372417 ZNF608Q9ULD9 1512 aaPredicted RBP15.89■□□□□ 0.13
YIPF3-201ENST00000372417 CFTRP13569 1480 aa15.88■□□□□ 0.13
YIPF3-201ENST00000372417 EIF4G3O43432 1585 aaKnown RBP15.87■□□□□ 0.13
YIPF3-201ENST00000372417 IFT140Q96RY7 1462 aa15.86■□□□□ 0.13
YIPF3-201ENST00000372417 RSF1Q96T23 1441 aaPredicted RBP15.84■□□□□ 0.13
YIPF3-201ENST00000372417 TOPBP1Q92547 1522 aa15.68■□□□□ 0.1
YIPF3-201ENST00000372417 TARBP1Q13395 1621 aaKnown RBP15.66■□□□□ 0.1
YIPF3-201ENST00000372417 FBLN2P98095 1184 aa15.66■□□□□ 0.1
YIPF3-201ENST00000372417 CLASP1Q7Z460 1538 aa15.65■□□□□ 0.1
YIPF3-201ENST00000372417 ILDR1Q86SU0 546 aaPredicted RBP15.64■□□□□ 0.09
YIPF3-201ENST00000372417 AQRO60306 1485 aaKnown RBP eCLIP15.63■□□□□ 0.091e-8■■■■□ 21
YIPF3-201ENST00000372417 TOP2AP11388 1531 aaKnown RBP15.61■□□□□ 0.09
YIPF3-201ENST00000372417 ABCC8Q09428 1581 aa15.61■□□□□ 0.09
YIPF3-201ENST00000372417 DNMBPQ6XZF7 1577 aa15.61■□□□□ 0.09
YIPF3-201ENST00000372417 SYNJ1O43426 1573 aa15.6■□□□□ 0.09
YIPF3-201ENST00000372417 KIF13AQ9H1H9 1805 aa15.54■□□□□ 0.08
YIPF3-201ENST00000372417 GAPVD1Q14C86 1478 aa15.5■□□□□ 0.07
YIPF3-201ENST00000372417 SNAPC4Q5SXM2 1469 aa15.5■□□□□ 0.07
YIPF3-201ENST00000372417 WDR97A6NE52 1622 aa15.48■□□□□ 0.07
YIPF3-201ENST00000372417 POLA1P09884 1462 aaPredicted RBP15.46■□□□□ 0.07
YIPF3-201ENST00000372417 MAGI1Q96QZ7 1491 aaPredicted RBP15.43■□□□□ 0.06
YIPF3-201ENST00000372417 CHMP7Q8WUX9 453 aaPredicted RBP15.42■□□□□ 0.06
YIPF3-201ENST00000372417 RAD54L2Q9Y4B4 1467 aa15.4■□□□□ 0.06
YIPF3-201ENST00000372417 PBRM1Q86U86 1689 aa15.39■□□□□ 0.05
YIPF3-201ENST00000372417 TDRD9Q8NDG6 1382 aaKnown RBP15.38■□□□□ 0.05
YIPF3-201ENST00000372417 CCDC88BA6NC98 1476 aa15.38■□□□□ 0.05
YIPF3-201ENST00000372417 SYNJ2O15056 1496 aa15.38■□□□□ 0.05
YIPF3-201ENST00000372417 ERCC6L2Q5T890 1561 aa15.34■□□□□ 0.05
YIPF3-201ENST00000372417 SOGA1O94964 1423 aa15.34■□□□□ 0.05
YIPF3-201ENST00000372417 GRIN2BQ13224 1484 aa15.33■□□□□ 0.05
YIPF3-201ENST00000372417 KDM4FA0A1W2PPD8 638 aa15.31■□□□□ 0.04
YIPF3-201ENST00000372417 KDM6BO15054 1643 aa15.28■□□□□ 0.04
YIPF3-201ENST00000372417 FGD5Q6ZNL6 1462 aa15.27■□□□□ 0.03
YIPF3-201ENST00000372417 CEP170Q5SW79 1584 aa15.25■□□□□ 0.03
YIPF3-201ENST00000372417 TSPOAP1O95153 1857 aa15.25■□□□□ 0.03
YIPF3-201ENST00000372417 SHROOM2Q13796 1616 aa15.21■□□□□ 0.03
YIPF3-201ENST00000372417 DIP2BQ9P265 1576 aa15.19■□□□□ 0.02
YIPF3-201ENST00000372417 ABCC10Q5T3U5 1492 aa15.18■□□□□ 0.02
YIPF3-201ENST00000372417 HECW2Q9P2P5 1572 aa15.18■□□□□ 0.02
YIPF3-201ENST00000372417 ABCA5Q8WWZ7 1642 aa15.17■□□□□ 0.02
YIPF3-201ENST00000372417 GRIN2AQ12879 1464 aa15.14■□□□□ 0.01
YIPF3-201ENST00000372417 FAM69CQ0P6D2 419 aa15.14■□□□□ 0.01
YIPF3-201ENST00000372417 CUX1P39880 1505 aa15.13■□□□□ 0.01
YIPF3-201ENST00000372417 MAPKBP1O60336 1514 aa15.12■□□□□ 0.01
YIPF3-201ENST00000372417 ADAMTS12P58397 1594 aa15.11■□□□□ 0.01
YIPF3-201ENST00000372417 NUP160Q12769 1436 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms