RNA–Protein interactions for RNA: ENST00000370656.5

RPF1-202, Transcript of ribosome production factor 1 homolog, humanhuman

TSL 2 BASIC

Gene RPF1, Length 724 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1-202ENST00000370656 NISCHQ9Y2I1 1504 aa37.93■■■■□ 3.66
RPF1-202ENST00000370656 ABCC9O60706 1549 aa34.54■■■■□ 3.12
RPF1-202ENST00000370656 CCDC180Q9P1Z9 1646 aa34.25■■■■□ 3.07
RPF1-202ENST00000370656 DNAJC5BQ9UF47 199 aa32.8■■■□□ 2.84
RPF1-202ENST00000370656 RB1CC1Q8TDY2 1594 aa32.75■■■□□ 2.83
RPF1-202ENST00000370656 AEBP2Q6ZN18 517 aaPredicted RBP32.7■■■□□ 2.83
RPF1-202ENST00000370656 NACADO15069 1562 aa32.44■■■□□ 2.78
RPF1-202ENST00000370656 DCAF8L2P0C7V8 631 aa32.19■■■□□ 2.74
RPF1-202ENST00000370656 PABPN1Q86U42 306 aaKnown RBP eCLIP32.02■■■□□ 2.72
RPF1-202ENST00000370656 UNC13AQ9UPW8 1703 aa31.99■■■□□ 2.71
RPF1-202ENST00000370656 MYO15BQ96JP2 1530 aa31.88■■■□□ 2.69
RPF1-202ENST00000370656 BICRAQ9NZM4 1560 aa31.72■■■□□ 2.67
RPF1-202ENST00000370656 ZCCHC6Q5VYS8 1495 aaKnown RBP31.36■■■□□ 2.61
RPF1-202ENST00000370656 SHROOM4Q9ULL8 1493 aa31.36■■■□□ 2.61
RPF1-202ENST00000370656 DCAF1Q9Y4B6 1507 aa31.34■■■□□ 2.61
RPF1-202ENST00000370656 CC2D2AQ9P2K1 1620 aa31.18■■■□□ 2.58
RPF1-202ENST00000370656 CECR2Q9BXF3 1484 aa31.14■■■□□ 2.58
RPF1-202ENST00000370656 SCRIBQ14160 1630 aa31.13■■■□□ 2.57
RPF1-202ENST00000370656 EIF4G1Q04637 1599 aaKnown RBP31■■■□□ 2.55
RPF1-202ENST00000370656 CHIC1Q5VXU3 224 aa30.55■■■□□ 2.48
RPF1-202ENST00000370656 DNAJC5Q9H3Z4 198 aa30.53■■■□□ 2.48
RPF1-202ENST00000370656 CUX2O14529 1486 aa29.96■■■□□ 2.39
RPF1-202ENST00000370656 NCAPD3P42695 1498 aa29.91■■■□□ 2.38
RPF1-202ENST00000370656 ERCC6Q03468 1493 aa29.88■■■□□ 2.37
RPF1-202ENST00000370656 ATAD2BQ9ULI0 1458 aa29.75■■■□□ 2.35
RPF1-202ENST00000370656 SMARCA2P51531 1590 aa29.72■■■□□ 2.35
RPF1-202ENST00000370656 HMGXB3Q12766 1538 aa29.69■■■□□ 2.34
RPF1-202ENST00000370656 SMARCA4P51532 1647 aa29.68■■■□□ 2.34
RPF1-202ENST00000370656 BAZ1AQ9NRL2 1556 aaPredicted RBP29.51■■■□□ 2.31
RPF1-202ENST00000370656 NESP48681 1621 aa29.49■■■□□ 2.31
RPF1-202ENST00000370656 BAZ1BQ9UIG0 1483 aaKnown RBP29.49■■■□□ 2.31
RPF1-202ENST00000370656 PEG3Q9GZU2 1588 aa29.39■■■□□ 2.29
RPF1-202ENST00000370656 THOC2Q8NI27 1593 aaKnown RBP29.35■■■□□ 2.29
RPF1-202ENST00000370656 LAMC3Q9Y6N6 1575 aa29.33■■■□□ 2.29
RPF1-202ENST00000370656 MROH2BQ7Z745 1585 aa29.2■■■□□ 2.26
RPF1-202ENST00000370656 KIF21AQ7Z4S6 1674 aa29.19■■■□□ 2.26
RPF1-202ENST00000370656 PDS5BQ9NTI5 1447 aa29.18■■■□□ 2.26
RPF1-202ENST00000370656 TRIM41Q8WV44 630 aa29.08■■■□□ 2.25
RPF1-202ENST00000370656 CADPSQ9ULU8 1353 aa28.99■■■□□ 2.23
RPF1-202ENST00000370656 MRC2Q9UBG0 1479 aa28.91■■■□□ 2.22
RPF1-202ENST00000370656 WIZO95785 1651 aa28.86■■■□□ 2.21
RPF1-202ENST00000370656 WDR62O43379 1518 aa28.84■■■□□ 2.21
RPF1-202ENST00000370656 CEP164Q9UPV0 1460 aa28.74■■■□□ 2.19
RPF1-202ENST00000370656 FANCD2Q9BXW9 1451 aa28.66■■■□□ 2.18
RPF1-202ENST00000370656 CFTRP13569 1480 aa28.59■■■□□ 2.17
RPF1-202ENST00000370656 TOP2AP11388 1531 aaKnown RBP28.48■■■□□ 2.15
RPF1-202ENST00000370656 OSCARQ8IYS5 282 aa28.48■■■□□ 2.15
RPF1-202ENST00000370656 RSF1Q96T23 1441 aaPredicted RBP28.48■■■□□ 2.15
RPF1-202ENST00000370656 URB2Q14146 1524 aaKnown RBP28.42■■■□□ 2.14
RPF1-202ENST00000370656 PRDM2Q13029 1718 aa28.37■■■□□ 2.13
RPF1-202ENST00000370656 RIMBP3CA6NJZ7 1639 aa28.27■■■□□ 2.12
RPF1-202ENST00000370656 RIMBP3BA6NNM3 1639 aa28.27■■■□□ 2.12
RPF1-202ENST00000370656 RIMBP3Q9UFD9 1639 aa28.27■■■□□ 2.12
RPF1-202ENST00000370656 IFT140Q96RY7 1462 aa28.18■■■□□ 2.1
RPF1-202ENST00000370656 CCDC88BA6NC98 1476 aa28.14■■■□□ 2.09
RPF1-202ENST00000370656 ZNF608Q9ULD9 1512 aaPredicted RBP28.1■■■□□ 2.09
RPF1-202ENST00000370656 ARHGEF11O15085 1522 aa28.08■■■□□ 2.09
RPF1-202ENST00000370656 TOPBP1Q92547 1522 aa28.08■■■□□ 2.08
RPF1-202ENST00000370656 ABCC8Q09428 1581 aa28.07■■■□□ 2.08
RPF1-202ENST00000370656 EIF4G3O43432 1585 aaKnown RBP27.99■■■□□ 2.07
RPF1-202ENST00000370656 DNMBPQ6XZF7 1577 aa27.98■■■□□ 2.07
RPF1-202ENST00000370656 CHD1O14646 1710 aa27.89■■■□□ 2.06
RPF1-202ENST00000370656 SENP3Q9H4L4 574 aaPredicted RBP27.89■■■□□ 2.06
RPF1-202ENST00000370656 CYB5RLQ6IPT4 315 aa27.86■■■□□ 2.05
RPF1-202ENST00000370656 TARBP1Q13395 1621 aaKnown RBP27.85■■■□□ 2.05
RPF1-202ENST00000370656 AQRO60306 1485 aaKnown RBP eCLIP27.83■■■□□ 2.042e-6■■■■■ 26.9
RPF1-202ENST00000370656 TRHP20396 242 aaPredicted RBP27.8■■■□□ 2.04
RPF1-202ENST00000370656 POLA1P09884 1462 aaPredicted RBP27.76■■■□□ 2.04
RPF1-202ENST00000370656 FBLN2P98095 1184 aa27.76■■■□□ 2.03
RPF1-202ENST00000370656 ARAP1Q96P48 1450 aa27.75■■■□□ 2.03
RPF1-202ENST00000370656 SOGA1O94964 1423 aa27.65■■■□□ 2.02
RPF1-202ENST00000370656 RAD54L2Q9Y4B4 1467 aa27.64■■■□□ 2.02
RPF1-202ENST00000370656 WDR97A6NE52 1622 aa27.63■■■□□ 2.01
RPF1-202ENST00000370656 TDRD9Q8NDG6 1382 aaKnown RBP27.6■■■□□ 2.01
RPF1-202ENST00000370656 SNAPC4Q5SXM2 1469 aa27.55■■■□□ 2
RPF1-202ENST00000370656 FGD5Q6ZNL6 1462 aa27.55■■■□□ 2
RPF1-202ENST00000370656 CHMP7Q8WUX9 453 aaPredicted RBP27.52■■■□□ 2
RPF1-202ENST00000370656 PHF23Q9BUL5 403 aaPredicted RBP27.51■■□□□ 1.99
RPF1-202ENST00000370656 SYNJ1O43426 1573 aa27.51■■□□□ 1.99
RPF1-202ENST00000370656 MAGI1Q96QZ7 1491 aaPredicted RBP27.51■■□□□ 1.99
RPF1-202ENST00000370656 CLASP1Q7Z460 1538 aa27.49■■□□□ 1.99
RPF1-202ENST00000370656 GRIN2BQ13224 1484 aa27.46■■□□□ 1.99
RPF1-202ENST00000370656 CUX1P39880 1505 aa27.46■■□□□ 1.99
RPF1-202ENST00000370656 SYNJ2O15056 1496 aa27.4■■□□□ 1.98
RPF1-202ENST00000370656 PBRM1Q86U86 1689 aa27.36■■□□□ 1.97
RPF1-202ENST00000370656 GAPVD1Q14C86 1478 aa27.32■■□□□ 1.96
RPF1-202ENST00000370656 ABCA10Q8WWZ4 1543 aa27.23■■□□□ 1.95
RPF1-202ENST00000370656 ABCA5Q8WWZ7 1642 aa27.22■■□□□ 1.95
RPF1-202ENST00000370656 GRIN2AQ12879 1464 aa27.09■■□□□ 1.93
RPF1-202ENST00000370656 WRNQ14191 1432 aaPredicted RBP eCLIP27.08■■□□□ 1.93
RPF1-202ENST00000370656 ADAMTS12P58397 1594 aa27.04■■□□□ 1.92
RPF1-202ENST00000370656 SUPT5HO00267 1087 aaKnown RBP27.01■■□□□ 1.91
RPF1-202ENST00000370656 ERCC6L2Q5T890 1561 aa27.01■■□□□ 1.91
RPF1-202ENST00000370656 NUP160Q12769 1436 aa26.99■■□□□ 1.91
RPF1-202ENST00000370656 BIVM-ERCC5R4GMW8 1640 aa26.99■■□□□ 1.91
RPF1-202ENST00000370656 CEP170Q5SW79 1584 aa26.99■■□□□ 1.91
RPF1-202ENST00000370656 TOP2BQ02880 1626 aa26.98■■□□□ 1.91
RPF1-202ENST00000370656 FHAD1B1AJZ9 1412 aa26.96■■□□□ 1.91
RPF1-202ENST00000370656 SHROOM2Q13796 1616 aa26.94■■□□□ 1.9
RPF1-202ENST00000370656 ERICH3Q5RHP9 1530 aa26.91■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms