RNA–Protein interactions for RNA: ENST00000368547.3

ECHS1-201, Transcript of enoyl-CoA hydratase, short chain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ECHS1, Length 1,617 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHS1-201ENST00000368547 UPF1Q92900 1129 aaKnown RBP eCLIP38.18■■■■□ 3.73e-14■■■■■ 31.8
ECHS1-201ENST00000368547 SF3B1O75533 1304 aaKnown RBP eCLIP31.7■■■□□ 2.673e-11■■■■■ 85.9
ECHS1-201ENST00000368547 XPO5Q9HAV4 1204 aaKnown RBP eCLIP35.07■■■■□ 3.213e-10■■■■■ 29.1
ECHS1-201ENST00000368547 DDX3XO00571 662 aaKnown RBP eCLIP31.2■■■□□ 2.594e-10■■■■□ 19.9
ECHS1-201ENST00000368547 LIN28BQ6ZN17 250 aaKnown RBP eCLIP32.2■■■□□ 2.755e-10■■■■■ 26.9
ECHS1-201ENST00000368547 YBX3P16989 372 aaKnown RBP eCLIP36.4■■■■□ 3.427e-10■■□□□ 11.6
ECHS1-201ENST00000368547 RBFOX2O43251 390 aaKnown RBP eCLIP23.69■■□□□ 1.388e-10■□□□□ 11.3
ECHS1-201ENST00000368547 LARP4Q71RC2 724 aaKnown RBP eCLIP28.14■■■□□ 2.18e-10■■□□□ 13.3
ECHS1-201ENST00000368547 SF3B4Q15427 424 aaKnown RBP eCLIP26.42■■□□□ 1.828e-9■■■■■ 57
ECHS1-201ENST00000368547 U2AF2P26368 475 aaKnown RBP eCLIP33.77■■■■□ 32e-8■■□□□ 14.4
ECHS1-201ENST00000368547 GRWD1Q9BQ67 446 aaKnown RBP eCLIP44.01■■■■■ 4.642e-8■■■■□ 23
ECHS1-201ENST00000368547 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP45.09■■■■■ 4.813e-8■■■■■ 27.7
ECHS1-201ENST00000368547 BUD13Q9BRD0 619 aaKnown RBP eCLIP32.21■■■□□ 2.754e-8■■■■□ 21.2
ECHS1-201ENST00000368547 SUB1P53999 127 aaKnown RBP eCLIP23.06■■□□□ 1.284e-8■■□□□ 13.5
ECHS1-201ENST00000368547 RPS3P23396 243 aaKnown RBP eCLIP29.13■■■□□ 2.251e-7■■■■■ 36.3
ECHS1-201ENST00000368547 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP24.35■■□□□ 1.491e-7■■■■■ 28.2
ECHS1-201ENST00000368547 DDX55Q8NHQ9 600 aaKnown RBP eCLIP34.92■■■■□ 3.181e-7■■■□□ 16.3
ECHS1-201ENST00000368547 EFTUD2Q15029 972 aaKnown RBP eCLIP29.27■■■□□ 2.282e-7■■■■□ 20.1
ECHS1-201ENST00000368547 SF3A3Q12874 501 aaKnown RBP eCLIP28.4■■■□□ 2.142e-7■■■■□ 26.3
ECHS1-201ENST00000368547 AQRO60306 1485 aaKnown RBP eCLIP49.52■■■■■ 5.523e-7■■■■□ 23.9
ECHS1-201ENST00000368547 HNRNPKP61978 463 aaKnown RBP eCLIP29.04■■■□□ 2.244e-7■■□□□ 13.6
ECHS1-201ENST00000368547 AKAP1Q92667 903 aaKnown RBP eCLIP25.41■■□□□ 1.664e-7■■■■□ 22.2
ECHS1-201ENST00000368547 PABPC4Q13310 644 aaKnown RBP eCLIP34.37■■■■□ 3.096e-7■■□□□ 11.4
ECHS1-201ENST00000368547 DDX59Q5T1V6 619 aaKnown RBP eCLIP27.35■■□□□ 1.979e-7■■■□□ 15.5
ECHS1-201ENST00000368547 RBM15Q96T37 977 aaKnown RBP eCLIP29.9■■■□□ 2.381e-6■□□□□ 11.3
ECHS1-201ENST00000368547 PPIGQ13427 754 aaKnown RBP eCLIP32.32■■■□□ 2.762e-6■■■■□ 21.6
ECHS1-201ENST00000368547 PCBP2Q15366 365 aaKnown RBP eCLIP28.51■■■□□ 2.152e-6■■■■■ 46.2
Retrieved 27 of 27 RNA–protein pairs in 12.8 ms