RNA–Protein interactions for RNA: ENST00000368210.7

PTPRK-204, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPRK, Length 5,025 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-204ENST00000368210 NISCHQ9Y2I1 1504 aa23.35■■□□□ 1.33
PTPRK-204ENST00000368210 DCAF8L2P0C7V8 631 aa23.15■■□□□ 1.3
PTPRK-204ENST00000368210 SUPT5HO00267 1087 aaKnown RBP22.2■■□□□ 1.15
PTPRK-204ENST00000368210 SHROOM4Q9ULL8 1493 aa21.99■■□□□ 1.11
PTPRK-204ENST00000368210 PELP1Q8IZL8 1130 aaKnown RBP21.66■■□□□ 1.06
PTPRK-204ENST00000368210 MYT1Q01538 1121 aa21.6■■□□□ 1.05
PTPRK-204ENST00000368210 EHMT2Q96KQ7 1210 aa21.16■□□□□ 0.98
PTPRK-204ENST00000368210 FAM9AQ8IZU1 332 aaPredicted RBP20.84■□□□□ 0.93
PTPRK-204ENST00000368210 APLP2Q06481 763 aa20.67■□□□□ 0.9
PTPRK-204ENST00000368210 PCGF6Q9BYE7 350 aa20.65■□□□□ 0.9
PTPRK-204ENST00000368210 TRIM41Q8WV44 630 aa20.61■□□□□ 0.89
PTPRK-204ENST00000368210 TTBK1Q5TCY1 1321 aaPredicted RBP20.44■□□□□ 0.86
PTPRK-204ENST00000368210 CENPBP07199 599 aaPredicted RBP20.31■□□□□ 0.84
PTPRK-204ENST00000368210 RANGAP1P46060 587 aaPredicted RBP20.26■□□□□ 0.83
PTPRK-204ENST00000368210 UBTFP17480 764 aaKnown RBP20.21■□□□□ 0.83
PTPRK-204ENST00000368210 ZEB1P37275 1124 aaPredicted RBP20.18■□□□□ 0.82
PTPRK-204ENST00000368210 CCER1Q8TC90 406 aaPredicted RBP20.12■□□□□ 0.81
PTPRK-204ENST00000368210 CHIC1Q5VXU3 224 aa20.1■□□□□ 0.81
PTPRK-204ENST00000368210 ERICH6Q7L0X2 663 aa20.05■□□□□ 0.8
PTPRK-204ENST00000368210 ATP1B4Q9UN42 357 aaPredicted RBP19.97■□□□□ 0.79
PTPRK-204ENST00000368210 LOC105371045A0A1W2PR82 267 aa19.94■□□□□ 0.78
PTPRK-204ENST00000368210 PPARGC1BQ86YN6 1023 aaKnown RBP19.92■□□□□ 0.78
PTPRK-204ENST00000368210 TRIM26Q12899 539 aaPredicted RBP19.92■□□□□ 0.78
PTPRK-204ENST00000368210 HRCP23327 699 aa19.82■□□□□ 0.76
PTPRK-204ENST00000368210 ABCC9O60706 1549 aa19.77■□□□□ 0.76
PTPRK-204ENST00000368210 PABPN1Q86U42 306 aaKnown RBP eCLIP19.56■□□□□ 0.72
PTPRK-204ENST00000368210 YTHDC1Q96MU7 727 aaKnown RBP19.47■□□□□ 0.71
PTPRK-204ENST00000368210 ITGAEP38570 1179 aa19.46■□□□□ 0.71
PTPRK-204ENST00000368210 HNRNPUL2Q1KMD3 747 aaKnown RBP19.45■□□□□ 0.7
PTPRK-204ENST00000368210 ZCCHC6Q5VYS8 1495 aaKnown RBP19.4■□□□□ 0.7
PTPRK-204ENST00000368210 NEFLP07196 543 aa19.34■□□□□ 0.69
PTPRK-204ENST00000368210 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.3■□□□□ 0.68
PTPRK-204ENST00000368210 CCDC180Q9P1Z9 1646 aa19.17■□□□□ 0.66
PTPRK-204ENST00000368210 SCRIBQ14160 1630 aa19.12■□□□□ 0.65
PTPRK-204ENST00000368210 CSRNP3Q8WYN3 585 aa19.06■□□□□ 0.64
PTPRK-204ENST00000368210 DIEXFQ68CQ4 756 aaKnown RBP19.05■□□□□ 0.64
PTPRK-204ENST00000368210 FAM50AQ14320 339 aaKnown RBP19.04■□□□□ 0.64
PTPRK-204ENST00000368210 GTF3C3Q9Y5Q9 886 aa19.02■□□□□ 0.64
PTPRK-204ENST00000368210 MYT1LQ9UL68 1186 aa19.01■□□□□ 0.63
PTPRK-204ENST00000368210 POLR3GLQ9BT43 218 aa19■□□□□ 0.63
PTPRK-204ENST00000368210 RTL5Q5HYW3 569 aaPredicted RBP18.91■□□□□ 0.62
PTPRK-204ENST00000368210 CNGB1Q14028 1251 aaPredicted RBP18.84■□□□□ 0.61
PTPRK-204ENST00000368210 ACIN1Q9UKV3 1341 aaKnown RBP18.84■□□□□ 0.61
PTPRK-204ENST00000368210 TRIM52Q96A61 297 aa18.83■□□□□ 0.61
PTPRK-204ENST00000368210 NEUROD1Q13562 356 aa18.83■□□□□ 0.6
PTPRK-204ENST00000368210 DCAF1Q9Y4B6 1507 aa18.79■□□□□ 0.6
PTPRK-204ENST00000368210 P3H3Q8IVL6 736 aa18.77■□□□□ 0.6
PTPRK-204ENST00000368210 FBLN2P98095 1184 aa18.72■□□□□ 0.59
PTPRK-204ENST00000368210 ZNF316A6NFI3 1004 aaPredicted RBP18.72■□□□□ 0.59
PTPRK-204ENST00000368210 RSF1Q96T23 1441 aaPredicted RBP18.71■□□□□ 0.59
PTPRK-204ENST00000368210 DAXXQ9UER7 740 aaPredicted RBP18.69■□□□□ 0.58
PTPRK-204ENST00000368210 RB1CC1Q8TDY2 1594 aa18.64■□□□□ 0.57
PTPRK-204ENST00000368210 MYO15BQ96JP2 1530 aa18.59■□□□□ 0.57
PTPRK-204ENST00000368210 ARID3CA6NKF2 412 aa18.59■□□□□ 0.57
PTPRK-204ENST00000368210 SCAF1Q9H7N4 1312 aaKnown RBP18.58■□□□□ 0.56
PTPRK-204ENST00000368210 NACADO15069 1562 aa18.57■□□□□ 0.56
PTPRK-204ENST00000368210 GLIPR1L2Q4G1C9 344 aa18.57■□□□□ 0.56
PTPRK-204ENST00000368210 ANP32CO43423 234 aa18.56■□□□□ 0.56
PTPRK-204ENST00000368210 ZNF326Q5BKZ1 582 aaKnown RBP18.55■□□□□ 0.56
PTPRK-204ENST00000368210 SLC4A1APQ9BWU0 796 aaKnown RBP18.53■□□□□ 0.56
PTPRK-204ENST00000368210 EIF5BO60841 1220 aaKnown RBP18.48■□□□□ 0.55
PTPRK-204ENST00000368210 CDK11AQ9UQ88 783 aaPredicted RBP18.47■□□□□ 0.55
PTPRK-204ENST00000368210 CLSPNQ9HAW4 1339 aa18.44■□□□□ 0.54
PTPRK-204ENST00000368210 BCL11AQ9H165 835 aa18.43■□□□□ 0.54
PTPRK-204ENST00000368210 ZNF777Q9ULD5 760 aaPredicted RBP18.42■□□□□ 0.54
PTPRK-204ENST00000368210 CLIP1P30622 1438 aa18.41■□□□□ 0.54
PTPRK-204ENST00000368210 EEA1Q15075 1411 aa18.41■□□□□ 0.54
PTPRK-204ENST00000368210 BCANQ96GW7 911 aa18.38■□□□□ 0.53
PTPRK-204ENST00000368210 WRNQ14191 1432 aaPredicted RBP eCLIP18.35■□□□□ 0.53
PTPRK-204ENST00000368210 CECR2Q9BXF3 1484 aa18.33■□□□□ 0.53
PTPRK-204ENST00000368210 CEP162Q5TB80 1403 aa18.33■□□□□ 0.53
PTPRK-204ENST00000368210 ANP32EQ9BTT0 268 aa18.33■□□□□ 0.53
PTPRK-204ENST00000368210 GOLGA3Q08378 1498 aa18.32■□□□□ 0.52
PTPRK-204ENST00000368210 TONSLQ96HA7 1378 aa18.32■□□□□ 0.52
PTPRK-204ENST00000368210 BAZ1AQ9NRL2 1556 aaPredicted RBP18.31■□□□□ 0.52
PTPRK-204ENST00000368210 BAZ1BQ9UIG0 1483 aaKnown RBP18.31■□□□□ 0.52
PTPRK-204ENST00000368210 TNIKQ9UKE5 1360 aa18.24■□□□□ 0.51
PTPRK-204ENST00000368210 MTUS2Q5JR59 1369 aa18.23■□□□□ 0.51
PTPRK-204ENST00000368210 CHIC2Q9UKJ5 165 aa18.23■□□□□ 0.51
PTPRK-204ENST00000368210 DDX10Q13206 875 aaKnown RBP18.2■□□□□ 0.5
PTPRK-204ENST00000368210 CEP164Q9UPV0 1460 aa18.17■□□□□ 0.5
PTPRK-204ENST00000368210 KIF27Q86VH2 1401 aa18.16■□□□□ 0.5
PTPRK-204ENST00000368210 CHMP7Q8WUX9 453 aaPredicted RBP18.12■□□□□ 0.49
PTPRK-204ENST00000368210 MROH2BQ7Z745 1585 aa18.11■□□□□ 0.49
PTPRK-204ENST00000368210 ANP32AP39687 249 aaKnown RBP18.08■□□□□ 0.49
PTPRK-204ENST00000368210 TSPY4P0CV99 314 aa18.07■□□□□ 0.48
PTPRK-204ENST00000368210 TSPY10P0CW01 314 aa18.07■□□□□ 0.48
PTPRK-204ENST00000368210 HNRNPUQ00839 825 aaKnown RBP eCLIP18.05■□□□□ 0.48
PTPRK-204ENST00000368210 MIER1Q8N108 512 aa18.05■□□□□ 0.48
PTPRK-204ENST00000368210 SOGA1O94964 1423 aa18.04■□□□□ 0.48
PTPRK-204ENST00000368210 RRP7BPQ9NSQ0 103 aa18.02■□□□□ 0.47
PTPRK-204ENST00000368210 FKBP8Q14318 412 aa18.01■□□□□ 0.47
PTPRK-204ENST00000368210 NPM1P06748 294 aaKnown RBP eCLIP18■□□□□ 0.47
PTPRK-204ENST00000368210 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18■□□□□ 0.475e-7■■□□□ 13.3
PTPRK-204ENST00000368210 CCDC88BA6NC98 1476 aa18■□□□□ 0.47
PTPRK-204ENST00000368210 FAM9BQ8IZU0 186 aa17.99■□□□□ 0.47
PTPRK-204ENST00000368210 CANXP27824 592 aaKnown RBP17.98■□□□□ 0.47
PTPRK-204ENST00000368210 CHGAP10645 457 aaKnown RBP17.98■□□□□ 0.47
PTPRK-204ENST00000368210 HIRIP3Q9BW71 556 aaPredicted RBP17.98■□□□□ 0.47
PTPRK-204ENST00000368210 NEFMP07197 916 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms