RNA: ENST00000366897.5

PRKN-205, Transcript of parkin RBR E3 ubiquitin protein ligase, human

TSL 1 (best) BASIC

Gene PRKN, Length 2,877 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKN-205	ENST00000366897	SMNDC1	O75940	238 aa	Known RBP eCLIP	14.47	□□□□□ -0.09	1e-18	■■■■■ 66.9
PRKN-205	ENST00000366897	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	15.55	■□□□□ 0.08	6e-17	■■■■■ 149.9
PRKN-205	ENST00000366897	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	14.28	□□□□□ -0.12	2e-15	■■■■■ 44.8
PRKN-205	ENST00000366897	DDX3X	O00571	662 aa	Known RBP eCLIP	14.79	□□□□□ -0.04	4e-14	■■■■□ 23.3
PRKN-205	ENST00000366897	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	13.78	□□□□□ -0.2	3e-11	■■■■■ 81.1
PRKN-205	ENST00000366897	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	15.09	■□□□□ 0.01	4e-10	■■■■□ 21.6
PRKN-205	ENST00000366897	HNRNPL	P14866	589 aa	Known RBP eCLIP	13.81	□□□□□ -0.2	4e-9	■■■■■ 41.8
PRKN-205	ENST00000366897	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	14.75	□□□□□ -0.05	1e-8	■■■■■ 226.9
PRKN-205	ENST00000366897	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	13.49	□□□□□ -0.25	3e-8	■■■■■ 70.6
PRKN-205	ENST00000366897	WDR43	Q15061	677 aa	Known RBP eCLIP	17.76	■□□□□ 0.43	3e-8	■■■■■ 70.1
PRKN-205	ENST00000366897	PUS1	Q9Y606	427 aa	Known RBP eCLIP	11.93	□□□□□ -0.5	9e-8	■■■■■ 35.6
PRKN-205	ENST00000366897	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	14.32	□□□□□ -0.12	1e-7	■■■■■ 323.4
PRKN-205	ENST00000366897	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	14.73	□□□□□ -0.05	5e-7	■■■■■ 41.5
PRKN-205	ENST00000366897	MATR3	P43243	847 aa	Known RBP eCLIP	15.26	■□□□□ 0.03	2e-6	■■■■□ 23.9
PRKN-205	ENST00000366897	DKC1	O60832	514 aa	Known RBP eCLIP	14.02	□□□□□ -0.16	2e-6	■■■■■ 33.3
PRKN-205	ENST00000366897	TROVE2	P10155	538 aa	Known RBP eCLIP	14.29	□□□□□ -0.12	2e-6	■■■■■ 29.4
PRKN-205	ENST00000366897	RPS3	P23396	243 aa	Known RBP eCLIP	13.06	□□□□□ -0.32	4e-6	■■■■■ 40.4
PRKN-205	ENST00000366897	EIF4G2	P78344	907 aa	Known RBP eCLIP	18.73	■□□□□ 0.59	6e-6	■■■■□ 25.1
PRKN-205	ENST00000366897	DDX21	Q9NR30	783 aa	Known RBP eCLIP	15.87	■□□□□ 0.13	8e-6	■■□□□ 14

Retrieved 19 of 19 RNA–protein pairs in 5.8 ms