RNA–Protein interactions for RNA: ENST00000366857.9

CNIH4-202, Transcript of cornichon family AMPA receptor auxiliary protein 4, humanhuman

TSL 1 (best) BASIC

Gene CNIH4, Length 3,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNIH4-202ENST00000366857 NISCHQ9Y2I1 1504 aa22.48■■□□□ 1.19
CNIH4-202ENST00000366857 CCDC180Q9P1Z9 1646 aa19.93■□□□□ 0.78
CNIH4-202ENST00000366857 ZCCHC6Q5VYS8 1495 aaKnown RBP19.04■□□□□ 0.64
CNIH4-202ENST00000366857 DCAF1Q9Y4B6 1507 aa18.92■□□□□ 0.62
CNIH4-202ENST00000366857 MYO15BQ96JP2 1530 aa18.7■□□□□ 0.58
CNIH4-202ENST00000366857 UNC13AQ9UPW8 1703 aa18.24■□□□□ 0.51
CNIH4-202ENST00000366857 NACADO15069 1562 aa18.2■□□□□ 0.5
CNIH4-202ENST00000366857 ABCC9O60706 1549 aa17.9■□□□□ 0.46
CNIH4-202ENST00000366857 RB1CC1Q8TDY2 1594 aa17.88■□□□□ 0.45
CNIH4-202ENST00000366857 BICRAQ9NZM4 1560 aa17.79■□□□□ 0.44
CNIH4-202ENST00000366857 SCRIBQ14160 1630 aa17.77■□□□□ 0.44
CNIH4-202ENST00000366857 SHROOM4Q9ULL8 1493 aa17.62■□□□□ 0.41
CNIH4-202ENST00000366857 PEG3Q9GZU2 1588 aa17.45■□□□□ 0.38
CNIH4-202ENST00000366857 EIF4G1Q04637 1599 aaKnown RBP17.4■□□□□ 0.38
CNIH4-202ENST00000366857 SMARCA4P51532 1647 aa17.35■□□□□ 0.37
CNIH4-202ENST00000366857 RSF1Q96T23 1441 aaPredicted RBP17.33■□□□□ 0.37
CNIH4-202ENST00000366857 MROH2BQ7Z745 1585 aa17.32■□□□□ 0.36
CNIH4-202ENST00000366857 BAZ1AQ9NRL2 1556 aaPredicted RBP17.32■□□□□ 0.36
CNIH4-202ENST00000366857 CECR2Q9BXF3 1484 aa17.31■□□□□ 0.36
CNIH4-202ENST00000366857 WIZO95785 1651 aa17.28■□□□□ 0.36
CNIH4-202ENST00000366857 TOP2AP11388 1531 aaKnown RBP17.08■□□□□ 0.32
CNIH4-202ENST00000366857 SMARCA2P51531 1590 aa17■□□□□ 0.31
CNIH4-202ENST00000366857 DCAF8L2P0C7V8 631 aa16.97■□□□□ 0.31
CNIH4-202ENST00000366857 PRDM2Q13029 1718 aa16.91■□□□□ 0.3
CNIH4-202ENST00000366857 HMGXB3Q12766 1538 aa16.89■□□□□ 0.3
CNIH4-202ENST00000366857 ATAD2BQ9ULI0 1458 aa16.83■□□□□ 0.28
CNIH4-202ENST00000366857 CCDC88BA6NC98 1476 aa16.74■□□□□ 0.27
CNIH4-202ENST00000366857 NCAPD3P42695 1498 aa16.74■□□□□ 0.27
CNIH4-202ENST00000366857 CC2D2AQ9P2K1 1620 aa16.62■□□□□ 0.25
CNIH4-202ENST00000366857 SUPT5HO00267 1087 aaKnown RBP16.58■□□□□ 0.24
CNIH4-202ENST00000366857 BIVM-ERCC5R4GMW8 1640 aa16.57■□□□□ 0.24
CNIH4-202ENST00000366857 PABPN1Q86U42 306 aaKnown RBP eCLIP16.53■□□□□ 0.24
CNIH4-202ENST00000366857 CHIC1Q5VXU3 224 aa16.49■□□□□ 0.23
CNIH4-202ENST00000366857 BAZ1BQ9UIG0 1483 aaKnown RBP16.49■□□□□ 0.23
CNIH4-202ENST00000366857 SYNJ1O43426 1573 aa16.42■□□□□ 0.22
CNIH4-202ENST00000366857 TOP2BQ02880 1626 aa16.4■□□□□ 0.22
CNIH4-202ENST00000366857 CFTRP13569 1480 aa16.39■□□□□ 0.22
CNIH4-202ENST00000366857 ABCC8Q09428 1581 aa16.37■□□□□ 0.21
CNIH4-202ENST00000366857 WDR97A6NE52 1622 aa16.33■□□□□ 0.2
CNIH4-202ENST00000366857 CUX1P39880 1505 aa16.22■□□□□ 0.19
CNIH4-202ENST00000366857 LAMC3Q9Y6N6 1575 aa16.2■□□□□ 0.18
CNIH4-202ENST00000366857 KIF21AQ7Z4S6 1674 aa16.16■□□□□ 0.18
CNIH4-202ENST00000366857 KIF21BO75037 1637 aa16.13■□□□□ 0.17
CNIH4-202ENST00000366857 WRNQ14191 1432 aaPredicted RBP eCLIP16.05■□□□□ 0.16
CNIH4-202ENST00000366857 THOC2Q8NI27 1593 aaKnown RBP16.04■□□□□ 0.16
CNIH4-202ENST00000366857 RUSC2Q8N2Y8 1516 aa16.03■□□□□ 0.16
CNIH4-202ENST00000366857 DNAJC5BQ9UF47 199 aa16.03■□□□□ 0.16
CNIH4-202ENST00000366857 CADPSQ9ULU8 1353 aa16.03■□□□□ 0.16
CNIH4-202ENST00000366857 DNMBPQ6XZF7 1577 aa16.02■□□□□ 0.16
CNIH4-202ENST00000366857 TARBP1Q13395 1621 aaKnown RBP16.01■□□□□ 0.15
CNIH4-202ENST00000366857 ABCA5Q8WWZ7 1642 aa15.99■□□□□ 0.15
CNIH4-202ENST00000366857 SOGA1O94964 1423 aa15.96■□□□□ 0.14
CNIH4-202ENST00000366857 NESP48681 1621 aa15.95■□□□□ 0.14
CNIH4-202ENST00000366857 EEA1Q15075 1411 aa15.94■□□□□ 0.14
CNIH4-202ENST00000366857 ERICH3Q5RHP9 1530 aa15.93■□□□□ 0.14
CNIH4-202ENST00000366857 URB2Q14146 1524 aaKnown RBP15.92■□□□□ 0.14
CNIH4-202ENST00000366857 PRXQ9BXM0 1461 aa15.9■□□□□ 0.14
CNIH4-202ENST00000366857 FANCD2Q9BXW9 1451 aa15.88■□□□□ 0.13
CNIH4-202ENST00000366857 WDR62O43379 1518 aa15.88■□□□□ 0.13
CNIH4-202ENST00000366857 TOPBP1Q92547 1522 aa15.88■□□□□ 0.13
CNIH4-202ENST00000366857 ABCA10Q8WWZ4 1543 aa15.85■□□□□ 0.13
CNIH4-202ENST00000366857 PBRM1Q86U86 1689 aa15.83■□□□□ 0.12
CNIH4-202ENST00000366857 FGD5Q6ZNL6 1462 aa15.79■□□□□ 0.12
CNIH4-202ENST00000366857 POLA1P09884 1462 aaPredicted RBP15.78■□□□□ 0.12
CNIH4-202ENST00000366857 CUL7Q14999 1698 aa15.78■□□□□ 0.12
CNIH4-202ENST00000366857 CTTNBP2Q8WZ74 1663 aa15.76■□□□□ 0.11
CNIH4-202ENST00000366857 CUX2O14529 1486 aa15.73■□□□□ 0.11
CNIH4-202ENST00000366857 TRIM41Q8WV44 630 aa15.71■□□□□ 0.11
CNIH4-202ENST00000366857 CEP164Q9UPV0 1460 aa15.71■□□□□ 0.1
CNIH4-202ENST00000366857 LRRIQ1Q96JM4 1722 aa15.69■□□□□ 0.1
CNIH4-202ENST00000366857 RAPGEF2Q9Y4G8 1499 aa15.68■□□□□ 0.1
CNIH4-202ENST00000366857 TNIKQ9UKE5 1360 aa15.67■□□□□ 0.1
CNIH4-202ENST00000366857 GOLGA3Q08378 1498 aa15.65■□□□□ 0.1
CNIH4-202ENST00000366857 SAMD9Q5K651 1589 aa15.63■□□□□ 0.09
CNIH4-202ENST00000366857 LOC105371045A0A1W2PR82 267 aa15.63■□□□□ 0.09
CNIH4-202ENST00000366857 MRC2Q9UBG0 1479 aa15.62■□□□□ 0.09
CNIH4-202ENST00000366857 ADAMTS12P58397 1594 aa15.6■□□□□ 0.09
CNIH4-202ENST00000366857 IGF1RP08069 1367 aa15.59■□□□□ 0.09
CNIH4-202ENST00000366857 PDS5BQ9NTI5 1447 aa15.59■□□□□ 0.09
CNIH4-202ENST00000366857 RAD54L2Q9Y4B4 1467 aa15.58■□□□□ 0.08
CNIH4-202ENST00000366857 EIF4G3O43432 1585 aaKnown RBP15.56■□□□□ 0.08
CNIH4-202ENST00000366857 ARAP1Q96P48 1450 aa15.55■□□□□ 0.08
CNIH4-202ENST00000366857 KIF27Q86VH2 1401 aa15.53■□□□□ 0.08
CNIH4-202ENST00000366857 CFAP43Q8NDM7 1665 aa15.52■□□□□ 0.07
CNIH4-202ENST00000366857 CEP162Q5TB80 1403 aa15.52■□□□□ 0.07
CNIH4-202ENST00000366857 CSRNP3Q8WYN3 585 aa15.48■□□□□ 0.07
CNIH4-202ENST00000366857 ARHGAP35Q9NRY4 1499 aa15.45■□□□□ 0.06
CNIH4-202ENST00000366857 MAP3K1Q13233 1512 aa15.44■□□□□ 0.06
CNIH4-202ENST00000366857 IFT140Q96RY7 1462 aa15.43■□□□□ 0.06
CNIH4-202ENST00000366857 EFCAB5A4FU69 1503 aa15.39■□□□□ 0.05
CNIH4-202ENST00000366857 SHROOM2Q13796 1616 aa15.38■□□□□ 0.05
CNIH4-202ENST00000366857 ZNF608Q9ULD9 1512 aaPredicted RBP15.38■□□□□ 0.05
CNIH4-202ENST00000366857 GAPVD1Q14C86 1478 aa15.38■□□□□ 0.05
CNIH4-202ENST00000366857 SNAPC4Q5SXM2 1469 aa15.36■□□□□ 0.05
CNIH4-202ENST00000366857 CEP170Q5SW79 1584 aa15.35■□□□□ 0.05
CNIH4-202ENST00000366857 AQRO60306 1485 aaKnown RBP eCLIP15.33■□□□□ 0.05
CNIH4-202ENST00000366857 UGGT2Q9NYU1 1516 aa15.33■□□□□ 0.04
CNIH4-202ENST00000366857 CLIP1P30622 1438 aa15.33■□□□□ 0.04
CNIH4-202ENST00000366857 VPS8Q8N3P4 1428 aa15.33■□□□□ 0.04
CNIH4-202ENST00000366857 PCF11O94913 1555 aaKnown RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms