RNA–Protein interactions for RNA: ENST00000358170.6

CD46-205, Transcript of CD46 molecule, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD46, Length 3,371 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-205ENST00000358170 NISCHQ9Y2I1 1504 aa16.6■□□□□ 0.25
CD46-205ENST00000358170 SHROOM4Q9ULL8 1493 aa14.77□□□□□ -0.05
CD46-205ENST00000358170 DCAF8L2P0C7V8 631 aa14.57□□□□□ -0.08
CD46-205ENST00000358170 SUPT5HO00267 1087 aaKnown RBP14.54□□□□□ -0.08
CD46-205ENST00000358170 ZCCHC6Q5VYS8 1495 aaKnown RBP13.97□□□□□ -0.17
CD46-205ENST00000358170 CHIC1Q5VXU3 224 aa13.86□□□□□ -0.19
CD46-205ENST00000358170 CCDC180Q9P1Z9 1646 aa13.81□□□□□ -0.2
CD46-205ENST00000358170 MYO15BQ96JP2 1530 aa13.7□□□□□ -0.22
CD46-205ENST00000358170 PCGF6Q9BYE7 350 aa13.68□□□□□ -0.22
CD46-205ENST00000358170 LOC105371045A0A1W2PR82 267 aa13.68□□□□□ -0.22
CD46-205ENST00000358170 EHMT2Q96KQ7 1210 aa13.63□□□□□ -0.23
CD46-205ENST00000358170 FAM9AQ8IZU1 332 aaPredicted RBP13.54□□□□□ -0.24
CD46-205ENST00000358170 HRCP23327 699 aa13.44□□□□□ -0.26
CD46-205ENST00000358170 PPARGC1BQ86YN6 1023 aaKnown RBP13.43□□□□□ -0.26
CD46-205ENST00000358170 ABCC9O60706 1549 aa13.4□□□□□ -0.26
CD46-205ENST00000358170 TRIM41Q8WV44 630 aa13.4□□□□□ -0.26
CD46-205ENST00000358170 SCRIBQ14160 1630 aa13.38□□□□□ -0.27
CD46-205ENST00000358170 DCAF1Q9Y4B6 1507 aa13.35□□□□□ -0.27
CD46-205ENST00000358170 RSF1Q96T23 1441 aaPredicted RBP13.26□□□□□ -0.29
CD46-205ENST00000358170 TRIM26Q12899 539 aaPredicted RBP13.18□□□□□ -0.3
CD46-205ENST00000358170 CECR2Q9BXF3 1484 aa13.14□□□□□ -0.31
CD46-205ENST00000358170 TTBK1Q5TCY1 1321 aaPredicted RBP13.14□□□□□ -0.31
CD46-205ENST00000358170 RB1CC1Q8TDY2 1594 aa13.1□□□□□ -0.31
CD46-205ENST00000358170 PABPN1Q86U42 306 aaKnown RBP eCLIP13.03□□□□□ -0.32
CD46-205ENST00000358170 MROH2BQ7Z745 1585 aa13.01□□□□□ -0.33
CD46-205ENST00000358170 NACADO15069 1562 aa12.93□□□□□ -0.34
CD46-205ENST00000358170 WIZO95785 1651 aa12.92□□□□□ -0.34
CD46-205ENST00000358170 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.89□□□□□ -0.35
CD46-205ENST00000358170 RANGAP1P46060 587 aaPredicted RBP12.87□□□□□ -0.35
CD46-205ENST00000358170 UBTFP17480 764 aaKnown RBP12.86□□□□□ -0.35
CD46-205ENST00000358170 CCER1Q8TC90 406 aaPredicted RBP12.83□□□□□ -0.36
CD46-205ENST00000358170 ZEB1P37275 1124 aaPredicted RBP12.81□□□□□ -0.36
CD46-205ENST00000358170 ABCC8Q09428 1581 aa12.76□□□□□ -0.37
CD46-205ENST00000358170 BAZ1AQ9NRL2 1556 aaPredicted RBP12.72□□□□□ -0.37
CD46-205ENST00000358170 CCDC88BA6NC98 1476 aa12.72□□□□□ -0.37
CD46-205ENST00000358170 SOGA1O94964 1423 aa12.7□□□□□ -0.38
CD46-205ENST00000358170 CSRNP3Q8WYN3 585 aa12.68□□□□□ -0.38
CD46-205ENST00000358170 RUSC2Q8N2Y8 1516 aa12.63□□□□□ -0.39
CD46-205ENST00000358170 HNRNPUL2Q1KMD3 747 aaKnown RBP12.63□□□□□ -0.39
CD46-205ENST00000358170 SMARCA4P51532 1647 aa12.59□□□□□ -0.39
CD46-205ENST00000358170 CEP162Q5TB80 1403 aa12.59□□□□□ -0.39
CD46-205ENST00000358170 TOP2AP11388 1531 aaKnown RBP12.58□□□□□ -0.4
CD46-205ENST00000358170 SMARCA2P51531 1590 aa12.55□□□□□ -0.4
CD46-205ENST00000358170 APLP2Q06481 763 aa12.55□□□□□ -0.4
CD46-205ENST00000358170 WRNQ14191 1432 aaPredicted RBP eCLIP12.51□□□□□ -0.41
CD46-205ENST00000358170 DIEXFQ68CQ4 756 aaKnown RBP12.49□□□□□ -0.41
CD46-205ENST00000358170 TNIKQ9UKE5 1360 aa12.48□□□□□ -0.41
CD46-205ENST00000358170 SCAF1Q9H7N4 1312 aaKnown RBP12.48□□□□□ -0.41
CD46-205ENST00000358170 UNC13AQ9UPW8 1703 aa12.47□□□□□ -0.41
CD46-205ENST00000358170 YTHDC1Q96MU7 727 aaKnown RBP12.46□□□□□ -0.41
CD46-205ENST00000358170 EIF4G1Q04637 1599 aaKnown RBP12.46□□□□□ -0.42
CD46-205ENST00000358170 BICRAQ9NZM4 1560 aa12.41□□□□□ -0.42
CD46-205ENST00000358170 BAZ1BQ9UIG0 1483 aaKnown RBP12.41□□□□□ -0.42
CD46-205ENST00000358170 GOLGA3Q08378 1498 aa12.41□□□□□ -0.42
CD46-205ENST00000358170 ITGAEP38570 1179 aa12.4□□□□□ -0.42
CD46-205ENST00000358170 CLIP1P30622 1438 aa12.38□□□□□ -0.43
CD46-205ENST00000358170 NEUROD1Q13562 356 aa12.38□□□□□ -0.43
CD46-205ENST00000358170 ATAD2BQ9ULI0 1458 aa12.38□□□□□ -0.43
CD46-205ENST00000358170 EEA1Q15075 1411 aa12.37□□□□□ -0.43
CD46-205ENST00000358170 SYNJ1O43426 1573 aa12.33□□□□□ -0.44
CD46-205ENST00000358170 ATP1B4Q9UN42 357 aaPredicted RBP12.33□□□□□ -0.44
CD46-205ENST00000358170 RAPGEF2Q9Y4G8 1499 aa12.33□□□□□ -0.44
CD46-205ENST00000358170 ZNF316A6NFI3 1004 aaPredicted RBP12.32□□□□□ -0.44
CD46-205ENST00000358170 ACIN1Q9UKV3 1341 aaKnown RBP12.31□□□□□ -0.44
CD46-205ENST00000358170 CEP164Q9UPV0 1460 aa12.31□□□□□ -0.44
CD46-205ENST00000358170 GTF3C3Q9Y5Q9 886 aa12.3□□□□□ -0.44
CD46-205ENST00000358170 CENPBP07199 599 aaPredicted RBP12.3□□□□□ -0.44
CD46-205ENST00000358170 KANK4Q5T7N3 995 aaPredicted RBP12.26□□□□□ -0.45
CD46-205ENST00000358170 P3H3Q8IVL6 736 aa12.26□□□□□ -0.45
CD46-205ENST00000358170 MIER1Q8N108 512 aa12.24□□□□□ -0.45
CD46-205ENST00000358170 VPS8Q8N3P4 1428 aa12.22□□□□□ -0.45
CD46-205ENST00000358170 PEG3Q9GZU2 1588 aa12.16□□□□□ -0.46
CD46-205ENST00000358170 KIF21BO75037 1637 aa12.14□□□□□ -0.47
CD46-205ENST00000358170 FAM50AQ14320 339 aaKnown RBP12.13□□□□□ -0.47
CD46-205ENST00000358170 KIF27Q86VH2 1401 aa12.12□□□□□ -0.47
CD46-205ENST00000358170 CUX1P39880 1505 aa12.07□□□□□ -0.48
CD46-205ENST00000358170 TOP2BQ02880 1626 aa12.07□□□□□ -0.48
CD46-205ENST00000358170 CUX2O14529 1486 aa12.07□□□□□ -0.48
CD46-205ENST00000358170 ARAP1Q96P48 1450 aa12.07□□□□□ -0.48
CD46-205ENST00000358170 NCAPD3P42695 1498 aa12.05□□□□□ -0.48
CD46-205ENST00000358170 PRXQ9BXM0 1461 aa12.04□□□□□ -0.48
CD46-205ENST00000358170 HIRIP3Q9BW71 556 aaPredicted RBP12.02□□□□□ -0.49
CD46-205ENST00000358170 DHX57Q6P158 1386 aaKnown RBP12.02□□□□□ -0.49
CD46-205ENST00000358170 PELP1Q8IZL8 1130 aaKnown RBP12.01□□□□□ -0.49
CD46-205ENST00000358170 CARMIL1Q5VZK9 1371 aa12.01□□□□□ -0.49
CD46-205ENST00000358170 IGF1RP08069 1367 aa12□□□□□ -0.49
CD46-205ENST00000358170 SIN3AQ96ST3 1273 aa12□□□□□ -0.49
CD46-205ENST00000358170 CCNB3Q8WWL7 1395 aa11.99□□□□□ -0.49
CD46-205ENST00000358170 ARID3CA6NKF2 412 aa11.99□□□□□ -0.49
CD46-205ENST00000358170 CFTRP13569 1480 aa11.99□□□□□ -0.49
CD46-205ENST00000358170 CADPSQ9ULU8 1353 aa11.97□□□□□ -0.49
CD46-205ENST00000358170 ARHGAP35Q9NRY4 1499 aa11.97□□□□□ -0.49
CD46-205ENST00000358170 BIVM-ERCC5R4GMW8 1640 aa11.93□□□□□ -0.5
CD46-205ENST00000358170 DNAJC5BQ9UF47 199 aa11.93□□□□□ -0.5
CD46-205ENST00000358170 KCNH8Q96L42 1107 aa11.93□□□□□ -0.5
CD46-205ENST00000358170 HMGXB3Q12766 1538 aa11.93□□□□□ -0.5
CD46-205ENST00000358170 ERICH3Q5RHP9 1530 aa11.93□□□□□ -0.5
CD46-205ENST00000358170 FGD5Q6ZNL6 1462 aa11.93□□□□□ -0.5
CD46-205ENST00000358170 RAB3GAP2Q9H2M9 1393 aa11.92□□□□□ -0.5
CD46-205ENST00000358170 DDX10Q13206 875 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 124.9 ms