RNA–Protein interactions for RNA: ENST00000350721.8

ATR-201, Transcript of ATR serine/threonine kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATR, Length 8,249 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATR-201ENST00000350721 NISCHQ9Y2I1 1504 aa13.51□□□□□ -0.25
ATR-201ENST00000350721 SUPT5HO00267 1087 aaKnown RBP12.29□□□□□ -0.44
ATR-201ENST00000350721 PELP1Q8IZL8 1130 aaKnown RBP12.22□□□□□ -0.45
ATR-201ENST00000350721 DCAF8L2P0C7V8 631 aa12.15□□□□□ -0.46
ATR-201ENST00000350721 ZEB1P37275 1124 aaPredicted RBP12.06□□□□□ -0.48
ATR-201ENST00000350721 SHROOM4Q9ULL8 1493 aa12.05□□□□□ -0.48
ATR-201ENST00000350721 MYT1Q01538 1121 aa12.01□□□□□ -0.49
ATR-201ENST00000350721 PCGF6Q9BYE7 350 aa11.95□□□□□ -0.5
ATR-201ENST00000350721 HRCP23327 699 aa11.94□□□□□ -0.5
ATR-201ENST00000350721 CENPBP07199 599 aaPredicted RBP11.77□□□□□ -0.52
ATR-201ENST00000350721 TRIM26Q12899 539 aaPredicted RBP11.73□□□□□ -0.53
ATR-201ENST00000350721 CHIC1Q5VXU3 224 aa11.66□□□□□ -0.54
ATR-201ENST00000350721 TRIM41Q8WV44 630 aa11.57□□□□□ -0.56
ATR-201ENST00000350721 CCER1Q8TC90 406 aaPredicted RBP11.49□□□□□ -0.57
ATR-201ENST00000350721 APLP2Q06481 763 aa11.49□□□□□ -0.57
ATR-201ENST00000350721 DCAF1Q9Y4B6 1507 aa11.47□□□□□ -0.57
ATR-201ENST00000350721 FAM9AQ8IZU1 332 aaPredicted RBP11.38□□□□□ -0.59
ATR-201ENST00000350721 CCDC180Q9P1Z9 1646 aa11.37□□□□□ -0.59
ATR-201ENST00000350721 ZCCHC6Q5VYS8 1495 aaKnown RBP11.35□□□□□ -0.59
ATR-201ENST00000350721 LOC105371045A0A1W2PR82 267 aa11.29□□□□□ -0.6
ATR-201ENST00000350721 PPARGC1BQ86YN6 1023 aaKnown RBP11.28□□□□□ -0.6
ATR-201ENST00000350721 EHMT2Q96KQ7 1210 aa11.23□□□□□ -0.61
ATR-201ENST00000350721 DIEXFQ68CQ4 756 aaKnown RBP11.2□□□□□ -0.62
ATR-201ENST00000350721 CLSPNQ9HAW4 1339 aa11.19□□□□□ -0.62
ATR-201ENST00000350721 UBTFP17480 764 aaKnown RBP11.17□□□□□ -0.62
ATR-201ENST00000350721 NEFLP07196 543 aa11.16□□□□□ -0.62
ATR-201ENST00000350721 ACIN1Q9UKV3 1341 aaKnown RBP11.12□□□□□ -0.63
ATR-201ENST00000350721 TTBK1Q5TCY1 1321 aaPredicted RBP11.12□□□□□ -0.63
ATR-201ENST00000350721 ERICH6Q7L0X2 663 aa11.06□□□□□ -0.64
ATR-201ENST00000350721 GTF3C3Q9Y5Q9 886 aa11.04□□□□□ -0.64
ATR-201ENST00000350721 YTHDC1Q96MU7 727 aaKnown RBP11.03□□□□□ -0.64
ATR-201ENST00000350721 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.02□□□□□ -0.65
ATR-201ENST00000350721 ZNF316A6NFI3 1004 aaPredicted RBP11□□□□□ -0.65
ATR-201ENST00000350721 MYO15BQ96JP2 1530 aa11□□□□□ -0.65
ATR-201ENST00000350721 SCAF1Q9H7N4 1312 aaKnown RBP10.9□□□□□ -0.66
ATR-201ENST00000350721 EEA1Q15075 1411 aa10.86□□□□□ -0.67
ATR-201ENST00000350721 HNRNPUL2Q1KMD3 747 aaKnown RBP10.85□□□□□ -0.67
ATR-201ENST00000350721 NEUROD1Q13562 356 aa10.82□□□□□ -0.68
ATR-201ENST00000350721 CSRNP3Q8WYN3 585 aa10.81□□□□□ -0.68
ATR-201ENST00000350721 MYT1LQ9UL68 1186 aa10.8□□□□□ -0.68
ATR-201ENST00000350721 RB1CC1Q8TDY2 1594 aa10.79□□□□□ -0.68
ATR-201ENST00000350721 RSF1Q96T23 1441 aaPredicted RBP10.77□□□□□ -0.68
ATR-201ENST00000350721 ABCC9O60706 1549 aa10.76□□□□□ -0.69
ATR-201ENST00000350721 SCRIBQ14160 1630 aa10.73□□□□□ -0.69
ATR-201ENST00000350721 RANGAP1P46060 587 aaPredicted RBP10.72□□□□□ -0.69
ATR-201ENST00000350721 NACADO15069 1562 aa10.67□□□□□ -0.7
ATR-201ENST00000350721 ANP32CO43423 234 aa10.67□□□□□ -0.7
ATR-201ENST00000350721 TNIKQ9UKE5 1360 aa10.66□□□□□ -0.7
ATR-201ENST00000350721 CDK11AQ9UQ88 783 aaPredicted RBP10.65□□□□□ -0.7
ATR-201ENST00000350721 RTL5Q5HYW3 569 aaPredicted RBP10.65□□□□□ -0.7
ATR-201ENST00000350721 CEP162Q5TB80 1403 aa10.64□□□□□ -0.71
ATR-201ENST00000350721 GOLGA3Q08378 1498 aa10.63□□□□□ -0.71
ATR-201ENST00000350721 ATP1B4Q9UN42 357 aaPredicted RBP10.61□□□□□ -0.71
ATR-201ENST00000350721 BAZ1AQ9NRL2 1556 aaPredicted RBP10.6□□□□□ -0.71
ATR-201ENST00000350721 CLIP1P30622 1438 aa10.59□□□□□ -0.71
ATR-201ENST00000350721 ITGAEP38570 1179 aa10.58□□□□□ -0.72
ATR-201ENST00000350721 DAXXQ9UER7 740 aaPredicted RBP10.58□□□□□ -0.72
ATR-201ENST00000350721 WRNQ14191 1432 aaPredicted RBP eCLIP10.57□□□□□ -0.72
ATR-201ENST00000350721 MIER1Q8N108 512 aa10.57□□□□□ -0.72
ATR-201ENST00000350721 CEP164Q9UPV0 1460 aa10.56□□□□□ -0.72
ATR-201ENST00000350721 ANP32EQ9BTT0 268 aa10.51□□□□□ -0.73
ATR-201ENST00000350721 TIMELESSQ9UNS1 1208 aa10.5□□□□□ -0.73
ATR-201ENST00000350721 FAM50AQ14320 339 aaKnown RBP10.48□□□□□ -0.73
ATR-201ENST00000350721 FKBP8Q14318 412 aa10.47□□□□□ -0.73
ATR-201ENST00000350721 ANP32AP39687 249 aaKnown RBP10.46□□□□□ -0.73
ATR-201ENST00000350721 TONSLQ96HA7 1378 aa10.45□□□□□ -0.74
ATR-201ENST00000350721 VPS8Q8N3P4 1428 aa10.44□□□□□ -0.74
ATR-201ENST00000350721 BCANQ96GW7 911 aa10.44□□□□□ -0.74
ATR-201ENST00000350721 ERICH6BQ5W0A0 696 aa10.41□□□□□ -0.74
ATR-201ENST00000350721 SUPT16HQ9Y5B9 1047 aaKnown RBP10.39□□□□□ -0.75
ATR-201ENST00000350721 DDX10Q13206 875 aaKnown RBP10.38□□□□□ -0.75
ATR-201ENST00000350721 CCER2I3L3R5 266 aa10.36□□□□□ -0.75
ATR-201ENST00000350721 HNRNPUQ00839 825 aaKnown RBP eCLIP10.36□□□□□ -0.75
ATR-201ENST00000350721 BAZ1BQ9UIG0 1483 aaKnown RBP10.36□□□□□ -0.75
ATR-201ENST00000350721 MROH2BQ7Z745 1585 aa10.36□□□□□ -0.75
ATR-201ENST00000350721 CECR2Q9BXF3 1484 aa10.35□□□□□ -0.75
ATR-201ENST00000350721 CCNB3Q8WWL7 1395 aa10.34□□□□□ -0.75
ATR-201ENST00000350721 TOP2AP11388 1531 aaKnown RBP10.33□□□□□ -0.76
ATR-201ENST00000350721 KIF27Q86VH2 1401 aa10.33□□□□□ -0.76
ATR-201ENST00000350721 FHAD1B1AJZ9 1412 aa10.31□□□□□ -0.76
ATR-201ENST00000350721 TRIM52Q96A61 297 aa10.3□□□□□ -0.76
ATR-201ENST00000350721 WIZO95785 1651 aa10.29□□□□□ -0.76
ATR-201ENST00000350721 CCDC88BA6NC98 1476 aa10.28□□□□□ -0.76
ATR-201ENST00000350721 ZBTB47Q9UFB7 747 aaPredicted RBP10.28□□□□□ -0.76
ATR-201ENST00000350721 SOGA1O94964 1423 aa10.27□□□□□ -0.76
ATR-201ENST00000350721 POLR3GLQ9BT43 218 aa10.26□□□□□ -0.77
ATR-201ENST00000350721 EIF4G2P78344 907 aaKnown RBP eCLIP10.26□□□□□ -0.77
ATR-201ENST00000350721 CCDC136Q96JN2 1154 aa10.26□□□□□ -0.77
ATR-201ENST00000350721 PABPN1Q86U42 306 aaKnown RBP eCLIP10.25□□□□□ -0.77
ATR-201ENST00000350721 PPP4R2Q9NY27 417 aa10.25□□□□□ -0.77
ATR-201ENST00000350721 ABCC8Q09428 1581 aa10.23□□□□□ -0.77
ATR-201ENST00000350721 BCL11AQ9H165 835 aa10.23□□□□□ -0.77
ATR-201ENST00000350721 MTUS2Q5JR59 1369 aa10.23□□□□□ -0.77
ATR-201ENST00000350721 MRS2Q9HD23 443 aa10.21□□□□□ -0.77
ATR-201ENST00000350721 RBM19Q9Y4C8 960 aaKnown RBP10.21□□□□□ -0.77
ATR-201ENST00000350721 TSHZ2Q9NRE2 1034 aa10.21□□□□□ -0.78
ATR-201ENST00000350721 SETD5Q9C0A6 1442 aa10.21□□□□□ -0.78
ATR-201ENST00000350721 GLIPR1L2Q4G1C9 344 aa10.21□□□□□ -0.78
ATR-201ENST00000350721 SMARCA2P51531 1590 aa10.2□□□□□ -0.78
ATR-201ENST00000350721 SMARCA4P51532 1647 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms