RNA–Protein interactions for RNA: ENST00000350498.7

PDAP1-201, Transcript of PDGFA associated protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDAP1, Length 2,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDAP1-201ENST00000350498 NISCHQ9Y2I1 1504 aa34.87■■■■□ 3.17
PDAP1-201ENST00000350498 SHROOM4Q9ULL8 1493 aa29.94■■■□□ 2.38
PDAP1-201ENST00000350498 CCDC180Q9P1Z9 1646 aa29.56■■■□□ 2.32
PDAP1-201ENST00000350498 ZCCHC6Q5VYS8 1495 aaKnown RBP29.42■■■□□ 2.3
PDAP1-201ENST00000350498 DCAF8L2P0C7V8 631 aa29.32■■■□□ 2.28
PDAP1-201ENST00000350498 SUPT5HO00267 1087 aaKnown RBP29.22■■■□□ 2.27
PDAP1-201ENST00000350498 DCAF1Q9Y4B6 1507 aa28.41■■■□□ 2.14
PDAP1-201ENST00000350498 CHIC1Q5VXU3 224 aa28.2■■■□□ 2.1
PDAP1-201ENST00000350498 MYO15BQ96JP2 1530 aa28.13■■■□□ 2.09
PDAP1-201ENST00000350498 SCRIBQ14160 1630 aa27.97■■■□□ 2.07
PDAP1-201ENST00000350498 ABCC9O60706 1549 aa27.91■■■□□ 2.06
PDAP1-201ENST00000350498 RSF1Q96T23 1441 aaPredicted RBP27.6■■■□□ 2.01
PDAP1-201ENST00000350498 LOC105371045A0A1W2PR82 267 aa27.54■■■□□ 2
PDAP1-201ENST00000350498 NACADO15069 1562 aa27.42■■□□□ 1.98
PDAP1-201ENST00000350498 CECR2Q9BXF3 1484 aa27.4■■□□□ 1.98
PDAP1-201ENST00000350498 RB1CC1Q8TDY2 1594 aa27.32■■□□□ 1.96
PDAP1-201ENST00000350498 PCGF6Q9BYE7 350 aa27.32■■□□□ 1.96
PDAP1-201ENST00000350498 HRCP23327 699 aa27.29■■□□□ 1.96
PDAP1-201ENST00000350498 MROH2BQ7Z745 1585 aa27.22■■□□□ 1.95
PDAP1-201ENST00000350498 TRIM41Q8WV44 630 aa27.09■■□□□ 1.93
PDAP1-201ENST00000350498 WIZO95785 1651 aa27.08■■□□□ 1.93
PDAP1-201ENST00000350498 FAM9AQ8IZU1 332 aaPredicted RBP27.08■■□□□ 1.92
PDAP1-201ENST00000350498 PPARGC1BQ86YN6 1023 aaKnown RBP27.02■■□□□ 1.92
PDAP1-201ENST00000350498 EHMT2Q96KQ7 1210 aa27.01■■□□□ 1.92
PDAP1-201ENST00000350498 UNC13AQ9UPW8 1703 aa26.8■■□□□ 1.88
PDAP1-201ENST00000350498 PABPN1Q86U42 306 aaKnown RBP eCLIP26.78■■□□□ 1.883e-10■□□□□ 10.9
PDAP1-201ENST00000350498 BAZ1AQ9NRL2 1556 aaPredicted RBP26.73■■□□□ 1.87
PDAP1-201ENST00000350498 SMARCA4P51532 1647 aa26.6■■□□□ 1.85
PDAP1-201ENST00000350498 TRIM26Q12899 539 aaPredicted RBP26.54■■□□□ 1.84
PDAP1-201ENST00000350498 CCDC88BA6NC98 1476 aa26.49■■□□□ 1.83
PDAP1-201ENST00000350498 EIF4G1Q04637 1599 aaKnown RBP26.49■■□□□ 1.83
PDAP1-201ENST00000350498 TOP2AP11388 1531 aaKnown RBP26.47■■□□□ 1.83
PDAP1-201ENST00000350498 BICRAQ9NZM4 1560 aa26.47■■□□□ 1.83
PDAP1-201ENST00000350498 ABCC8Q09428 1581 aa26.46■■□□□ 1.83
PDAP1-201ENST00000350498 SMARCA2P51531 1590 aa26.4■■□□□ 1.82
PDAP1-201ENST00000350498 SOGA1O94964 1423 aa26.17■■□□□ 1.78
PDAP1-201ENST00000350498 RUSC2Q8N2Y8 1516 aa26.11■■□□□ 1.77
PDAP1-201ENST00000350498 TTBK1Q5TCY1 1321 aaPredicted RBP26.03■■□□□ 1.76
PDAP1-201ENST00000350498 ATAD2BQ9ULI0 1458 aa25.99■■□□□ 1.75
PDAP1-201ENST00000350498 PEG3Q9GZU2 1588 aa25.98■■□□□ 1.75
PDAP1-201ENST00000350498 CSRNP3Q8WYN3 585 aa25.9■■□□□ 1.74
PDAP1-201ENST00000350498 BAZ1BQ9UIG0 1483 aaKnown RBP25.9■■□□□ 1.74
PDAP1-201ENST00000350498 WRNQ14191 1432 aaPredicted RBP eCLIP25.89■■□□□ 1.73
PDAP1-201ENST00000350498 UBTFP17480 764 aaKnown RBP25.86■■□□□ 1.73
PDAP1-201ENST00000350498 CEP162Q5TB80 1403 aa25.84■■□□□ 1.73
PDAP1-201ENST00000350498 SYNJ1O43426 1573 aa25.83■■□□□ 1.73
PDAP1-201ENST00000350498 ZEB1P37275 1124 aaPredicted RBP25.83■■□□□ 1.73
PDAP1-201ENST00000350498 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.75■■□□□ 1.71
PDAP1-201ENST00000350498 TNIKQ9UKE5 1360 aa25.73■■□□□ 1.71
PDAP1-201ENST00000350498 EEA1Q15075 1411 aa25.65■■□□□ 1.7
PDAP1-201ENST00000350498 RANGAP1P46060 587 aaPredicted RBP25.64■■□□□ 1.7
PDAP1-201ENST00000350498 GOLGA3Q08378 1498 aa25.61■■□□□ 1.69
PDAP1-201ENST00000350498 CCER1Q8TC90 406 aaPredicted RBP25.53■■□□□ 1.68
PDAP1-201ENST00000350498 RAPGEF2Q9Y4G8 1499 aa25.49■■□□□ 1.67
PDAP1-201ENST00000350498 CEP164Q9UPV0 1460 aa25.46■■□□□ 1.67
PDAP1-201ENST00000350498 NCAPD3P42695 1498 aa25.45■■□□□ 1.66
PDAP1-201ENST00000350498 SCAF1Q9H7N4 1312 aaKnown RBP25.43■■□□□ 1.66
PDAP1-201ENST00000350498 TOP2BQ02880 1626 aa25.41■■□□□ 1.66
PDAP1-201ENST00000350498 KIF21BO75037 1637 aa25.4■■□□□ 1.66
PDAP1-201ENST00000350498 CLIP1P30622 1438 aa25.39■■□□□ 1.65
PDAP1-201ENST00000350498 HMGXB3Q12766 1538 aa25.36■■□□□ 1.65
PDAP1-201ENST00000350498 CUX1P39880 1505 aa25.31■■□□□ 1.64
PDAP1-201ENST00000350498 BIVM-ERCC5R4GMW8 1640 aa25.29■■□□□ 1.64
PDAP1-201ENST00000350498 HNRNPUL2Q1KMD3 747 aaKnown RBP25.26■■□□□ 1.63
PDAP1-201ENST00000350498 CFTRP13569 1480 aa25.22■■□□□ 1.63
PDAP1-201ENST00000350498 VPS8Q8N3P4 1428 aa25.2■■□□□ 1.62
PDAP1-201ENST00000350498 PRXQ9BXM0 1461 aa25.14■■□□□ 1.62
PDAP1-201ENST00000350498 APLP2Q06481 763 aa25.1■■□□□ 1.61
PDAP1-201ENST00000350498 NEUROD1Q13562 356 aa25.07■■□□□ 1.6
PDAP1-201ENST00000350498 DIEXFQ68CQ4 756 aaKnown RBP25.07■■□□□ 1.6
PDAP1-201ENST00000350498 KIF27Q86VH2 1401 aa25.05■■□□□ 1.6
PDAP1-201ENST00000350498 KANK4Q5T7N3 995 aaPredicted RBP25.03■■□□□ 1.6
PDAP1-201ENST00000350498 ARAP1Q96P48 1450 aa25.03■■□□□ 1.6
PDAP1-201ENST00000350498 CC2D2AQ9P2K1 1620 aa25.02■■□□□ 1.6
PDAP1-201ENST00000350498 CADPSQ9ULU8 1353 aa25.01■■□□□ 1.59
PDAP1-201ENST00000350498 ERICH3Q5RHP9 1530 aa25■■□□□ 1.59
PDAP1-201ENST00000350498 ACIN1Q9UKV3 1341 aaKnown RBP24.98■■□□□ 1.59
PDAP1-201ENST00000350498 CUX2O14529 1486 aa24.96■■□□□ 1.59
PDAP1-201ENST00000350498 IGF1RP08069 1367 aa24.91■■□□□ 1.58
PDAP1-201ENST00000350498 FGD5Q6ZNL6 1462 aa24.89■■□□□ 1.57
PDAP1-201ENST00000350498 PRDM2Q13029 1718 aa24.88■■□□□ 1.57
PDAP1-201ENST00000350498 NESP48681 1621 aa24.86■■□□□ 1.57
PDAP1-201ENST00000350498 ARHGAP35Q9NRY4 1499 aa24.85■■□□□ 1.57
PDAP1-201ENST00000350498 DNAJC5BQ9UF47 199 aa24.83■■□□□ 1.57
PDAP1-201ENST00000350498 GTF3C3Q9Y5Q9 886 aa24.81■■□□□ 1.56
PDAP1-201ENST00000350498 FANCD2Q9BXW9 1451 aa24.8■■□□□ 1.56
PDAP1-201ENST00000350498 RAD54L2Q9Y4B4 1467 aa24.77■■□□□ 1.56
PDAP1-201ENST00000350498 CARMIL1Q5VZK9 1371 aa24.77■■□□□ 1.56
PDAP1-201ENST00000350498 P3H3Q8IVL6 736 aa24.77■■□□□ 1.56
PDAP1-201ENST00000350498 ZNF316A6NFI3 1004 aaPredicted RBP24.75■■□□□ 1.55
PDAP1-201ENST00000350498 ITGAEP38570 1179 aa24.73■■□□□ 1.55
PDAP1-201ENST00000350498 YTHDC1Q96MU7 727 aaKnown RBP24.71■■□□□ 1.55
PDAP1-201ENST00000350498 PELP1Q8IZL8 1130 aaKnown RBP24.7■■□□□ 1.54
PDAP1-201ENST00000350498 CENPBP07199 599 aaPredicted RBP24.67■■□□□ 1.54
PDAP1-201ENST00000350498 ATP1B4Q9UN42 357 aaPredicted RBP24.62■■□□□ 1.53
PDAP1-201ENST00000350498 POLA1P09884 1462 aaPredicted RBP24.61■■□□□ 1.53
PDAP1-201ENST00000350498 TOPBP1Q92547 1522 aa24.61■■□□□ 1.53
PDAP1-201ENST00000350498 MIER1Q8N108 512 aa24.59■■□□□ 1.53
PDAP1-201ENST00000350498 DHX57Q6P158 1386 aaKnown RBP24.58■■□□□ 1.53
PDAP1-201ENST00000350498 RRBP1Q9P2E9 1410 aaKnown RBP24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms