RNA–Protein interactions for RNA: ENST00000349511.8

UBA3-201, Transcript of ubiquitin like modifier activating enzyme 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene UBA3, Length 2,112 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBA3-201ENST00000349511 NISCHQ9Y2I1 1504 aa30.11■■■□□ 2.41
UBA3-201ENST00000349511 CCDC180Q9P1Z9 1646 aa26.15■■□□□ 1.78
UBA3-201ENST00000349511 ZCCHC6Q5VYS8 1495 aaKnown RBP25.26■■□□□ 1.63
UBA3-201ENST00000349511 DCAF8L2P0C7V8 631 aa25.22■■□□□ 1.63
UBA3-201ENST00000349511 ABCC9O60706 1549 aa25.05■■□□□ 1.6
UBA3-201ENST00000349511 SHROOM4Q9ULL8 1493 aa24.83■■□□□ 1.57
UBA3-201ENST00000349511 DCAF1Q9Y4B6 1507 aa24.75■■□□□ 1.55
UBA3-201ENST00000349511 MYO15BQ96JP2 1530 aa24.43■■□□□ 1.5
UBA3-201ENST00000349511 NACADO15069 1562 aa24.41■■□□□ 1.5
UBA3-201ENST00000349511 SCRIBQ14160 1630 aa24.27■■□□□ 1.48
UBA3-201ENST00000349511 RB1CC1Q8TDY2 1594 aa24.25■■□□□ 1.47
UBA3-201ENST00000349511 SUPT5HO00267 1087 aaKnown RBP23.87■■□□□ 1.41
UBA3-201ENST00000349511 UNC13AQ9UPW8 1703 aa23.84■■□□□ 1.41
UBA3-201ENST00000349511 PABPN1Q86U42 306 aaKnown RBP eCLIP23.71■■□□□ 1.39
UBA3-201ENST00000349511 BICRAQ9NZM4 1560 aa23.57■■□□□ 1.36
UBA3-201ENST00000349511 CECR2Q9BXF3 1484 aa23.53■■□□□ 1.36
UBA3-201ENST00000349511 RSF1Q96T23 1441 aaPredicted RBP23.4■■□□□ 1.34
UBA3-201ENST00000349511 MROH2BQ7Z745 1585 aa23.34■■□□□ 1.33
UBA3-201ENST00000349511 BAZ1AQ9NRL2 1556 aaPredicted RBP23.22■■□□□ 1.31
UBA3-201ENST00000349511 WIZO95785 1651 aa23.17■■□□□ 1.3
UBA3-201ENST00000349511 SMARCA4P51532 1647 aa23.16■■□□□ 1.3
UBA3-201ENST00000349511 EIF4G1Q04637 1599 aaKnown RBP22.87■■□□□ 1.25
UBA3-201ENST00000349511 ATAD2BQ9ULI0 1458 aa22.81■■□□□ 1.24
UBA3-201ENST00000349511 TOP2AP11388 1531 aaKnown RBP22.8■■□□□ 1.24
UBA3-201ENST00000349511 PEG3Q9GZU2 1588 aa22.78■■□□□ 1.24
UBA3-201ENST00000349511 SMARCA2P51531 1590 aa22.73■■□□□ 1.23
UBA3-201ENST00000349511 CHIC1Q5VXU3 224 aa22.7■■□□□ 1.22
UBA3-201ENST00000349511 BAZ1BQ9UIG0 1483 aaKnown RBP22.69■■□□□ 1.22
UBA3-201ENST00000349511 CCDC88BA6NC98 1476 aa22.66■■□□□ 1.22
UBA3-201ENST00000349511 CC2D2AQ9P2K1 1620 aa22.58■■□□□ 1.2
UBA3-201ENST00000349511 NCAPD3P42695 1498 aa22.56■■□□□ 1.2
UBA3-201ENST00000349511 HMGXB3Q12766 1538 aa22.49■■□□□ 1.19
UBA3-201ENST00000349511 TRIM41Q8WV44 630 aa22.34■■□□□ 1.17
UBA3-201ENST00000349511 ABCC8Q09428 1581 aa22.25■■□□□ 1.15
UBA3-201ENST00000349511 DNAJC5BQ9UF47 199 aa22.25■■□□□ 1.15
UBA3-201ENST00000349511 FAM9AQ8IZU1 332 aaPredicted RBP22.09■■□□□ 1.13
UBA3-201ENST00000349511 CFTRP13569 1480 aa22.08■■□□□ 1.12
UBA3-201ENST00000349511 CADPSQ9ULU8 1353 aa22.04■■□□□ 1.12
UBA3-201ENST00000349511 WRNQ14191 1432 aaPredicted RBP eCLIP22.02■■□□□ 1.12
UBA3-201ENST00000349511 NESP48681 1621 aa21.98■■□□□ 1.11
UBA3-201ENST00000349511 LOC105371045A0A1W2PR82 267 aa21.97■■□□□ 1.11
UBA3-201ENST00000349511 SYNJ1O43426 1573 aa21.95■■□□□ 1.1
UBA3-201ENST00000349511 EHMT2Q96KQ7 1210 aa21.91■■□□□ 1.1
UBA3-201ENST00000349511 PRDM2Q13029 1718 aa21.89■■□□□ 1.09
UBA3-201ENST00000349511 FANCD2Q9BXW9 1451 aa21.82■■□□□ 1.08
UBA3-201ENST00000349511 SOGA1O94964 1423 aa21.82■■□□□ 1.08
UBA3-201ENST00000349511 CUX1P39880 1505 aa21.8■■□□□ 1.08
UBA3-201ENST00000349511 LAMC3Q9Y6N6 1575 aa21.79■■□□□ 1.08
UBA3-201ENST00000349511 TOP2BQ02880 1626 aa21.79■■□□□ 1.08
UBA3-201ENST00000349511 RUSC2Q8N2Y8 1516 aa21.77■■□□□ 1.08
UBA3-201ENST00000349511 BIVM-ERCC5R4GMW8 1640 aa21.74■■□□□ 1.07
UBA3-201ENST00000349511 PDS5BQ9NTI5 1447 aa21.67■■□□□ 1.06
UBA3-201ENST00000349511 CEP164Q9UPV0 1460 aa21.66■■□□□ 1.06
UBA3-201ENST00000349511 KIF21AQ7Z4S6 1674 aa21.64■■□□□ 1.05
UBA3-201ENST00000349511 CSRNP3Q8WYN3 585 aa21.62■■□□□ 1.05
UBA3-201ENST00000349511 FGD5Q6ZNL6 1462 aa21.58■■□□□ 1.05
UBA3-201ENST00000349511 TOPBP1Q92547 1522 aa21.57■■□□□ 1.04
UBA3-201ENST00000349511 URB2Q14146 1524 aaKnown RBP21.56■■□□□ 1.04
UBA3-201ENST00000349511 EEA1Q15075 1411 aa21.55■■□□□ 1.04
UBA3-201ENST00000349511 DNMBPQ6XZF7 1577 aa21.55■■□□□ 1.04
UBA3-201ENST00000349511 HRCP23327 699 aa21.5■■□□□ 1.03
UBA3-201ENST00000349511 RAD54L2Q9Y4B4 1467 aa21.49■■□□□ 1.03
UBA3-201ENST00000349511 POLA1P09884 1462 aaPredicted RBP21.48■■□□□ 1.03
UBA3-201ENST00000349511 CUX2O14529 1486 aa21.46■■□□□ 1.03
UBA3-201ENST00000349511 KIF27Q86VH2 1401 aa21.45■■□□□ 1.02
UBA3-201ENST00000349511 ERCC6Q03468 1493 aa21.44■■□□□ 1.02
UBA3-201ENST00000349511 UBTFP17480 764 aaKnown RBP21.43■■□□□ 1.02
UBA3-201ENST00000349511 PCGF6Q9BYE7 350 aa21.41■■□□□ 1.02
UBA3-201ENST00000349511 MRC2Q9UBG0 1479 aa21.39■■□□□ 1.01
UBA3-201ENST00000349511 GOLGA3Q08378 1498 aa21.35■■□□□ 1.01
UBA3-201ENST00000349511 RAPGEF2Q9Y4G8 1499 aa21.35■■□□□ 1.01
UBA3-201ENST00000349511 KIF21BO75037 1637 aa21.32■■□□□ 1
UBA3-201ENST00000349511 ABCA10Q8WWZ4 1543 aa21.31■■□□□ 1
UBA3-201ENST00000349511 TDRD9Q8NDG6 1382 aaKnown RBP21.3■■□□□ 1
UBA3-201ENST00000349511 IGF1RP08069 1367 aa21.3■■□□□ 1
UBA3-201ENST00000349511 RANGAP1P46060 587 aaPredicted RBP21.28■■□□□ 1
UBA3-201ENST00000349511 TNIKQ9UKE5 1360 aa21.27■■□□□ 1
UBA3-201ENST00000349511 PRXQ9BXM0 1461 aa21.26■□□□□ 0.99
UBA3-201ENST00000349511 WDR62O43379 1518 aa21.25■□□□□ 0.99
UBA3-201ENST00000349511 WDR97A6NE52 1622 aa21.23■□□□□ 0.99
UBA3-201ENST00000349511 THOC2Q8NI27 1593 aaKnown RBP21.23■□□□□ 0.99
UBA3-201ENST00000349511 CEP162Q5TB80 1403 aa21.22■□□□□ 0.99
UBA3-201ENST00000349511 TARBP1Q13395 1621 aaKnown RBP21.22■□□□□ 0.99
UBA3-201ENST00000349511 CARMIL1Q5VZK9 1371 aa21.2■□□□□ 0.98
UBA3-201ENST00000349511 GAPVD1Q14C86 1478 aa21.17■□□□□ 0.98
UBA3-201ENST00000349511 ERICH3Q5RHP9 1530 aa21.16■□□□□ 0.98
UBA3-201ENST00000349511 AQRO60306 1485 aaKnown RBP eCLIP21.16■□□□□ 0.981e-9■■■■■ 37.7
UBA3-201ENST00000349511 ABCA5Q8WWZ7 1642 aa21.14■□□□□ 0.98
UBA3-201ENST00000349511 ZNF608Q9ULD9 1512 aaPredicted RBP21.13■□□□□ 0.97
UBA3-201ENST00000349511 IFT140Q96RY7 1462 aa21.11■□□□□ 0.97
UBA3-201ENST00000349511 CLIP1P30622 1438 aa21.06■□□□□ 0.96
UBA3-201ENST00000349511 PPARGC1BQ86YN6 1023 aaKnown RBP21.05■□□□□ 0.96
UBA3-201ENST00000349511 CUL7Q14999 1698 aa21.03■□□□□ 0.96
UBA3-201ENST00000349511 PBRM1Q86U86 1689 aa21.02■□□□□ 0.96
UBA3-201ENST00000349511 TRIM26Q12899 539 aaPredicted RBP21.01■□□□□ 0.95
UBA3-201ENST00000349511 EIF4G3O43432 1585 aaKnown RBP20.97■□□□□ 0.95
UBA3-201ENST00000349511 GRIN2BQ13224 1484 aa20.97■□□□□ 0.95
UBA3-201ENST00000349511 TTBK1Q5TCY1 1321 aaPredicted RBP20.91■□□□□ 0.94
UBA3-201ENST00000349511 SNAPC4Q5SXM2 1469 aa20.9■□□□□ 0.94
UBA3-201ENST00000349511 FHAD1B1AJZ9 1412 aa20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms