RNA–Protein interactions for RNA: ENST00000349496.9

CTNNB1-201, Transcript of catenin beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNNB1, Length 3,737 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNB1-201ENST00000349496 SF3B1O75533 1304 aaKnown RBP eCLIP12.32□□□□□ -0.443e-6■■■■■ 82.7
CTNNB1-201ENST00000349496 GTF2F1P35269 517 aaKnown RBP eCLIP14.93□□□□□ -0.022e-18■■■■■ 80.7
CTNNB1-201ENST00000349496 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.25□□□□□ -0.295e-7■■■■■ 76.2
CTNNB1-201ENST00000349496 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.12□□□□□ -0.152e-6■■■■■ 74
CTNNB1-201ENST00000349496 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.03□□□□□ -0.482e-7■■■■■ 62.8
CTNNB1-201ENST00000349496 CSTF2P33240 577 aaKnown RBP eCLIP12.12□□□□□ -0.472e-23■■■■■ 62.4
CTNNB1-201ENST00000349496 SUB1P53999 127 aaKnown RBP eCLIP9.5□□□□□ -0.895e-10■■■■■ 38.7
CTNNB1-201ENST00000349496 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.23□□□□□ -0.291e-10■■■■■ 35.8
CTNNB1-201ENST00000349496 PRPF4O43172 522 aaKnown RBP eCLIP12.35□□□□□ -0.434e-8■■■■■ 35.1
CTNNB1-201ENST00000349496 AQRO60306 1485 aaKnown RBP eCLIP15.86■□□□□ 0.135e-8■■■■■ 34.8
CTNNB1-201ENST00000349496 TIA1P31483 386 aaKnown RBP eCLIP10.74□□□□□ -0.695e-7■■■■■ 34.6
CTNNB1-201ENST00000349496 NOLC1Q14978 699 aaKnown RBP eCLIP14.81□□□□□ -0.045e-10■■■■■ 31.5
CTNNB1-201ENST00000349496 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.78□□□□□ -0.521e-7■■■■■ 31.4
CTNNB1-201ENST00000349496 MATR3P43243 847 aaKnown RBP eCLIP13.54□□□□□ -0.242e-7■■■■■ 30.9
CTNNB1-201ENST00000349496 RBM5P52756 815 aaKnown RBP eCLIP14.5□□□□□ -0.098e-8■■■■■ 27.9
CTNNB1-201ENST00000349496 PCBP2Q15366 365 aaKnown RBP eCLIP10.89□□□□□ -0.673e-9■■■■■ 27.4
CTNNB1-201ENST00000349496 DDX3XO00571 662 aaKnown RBP eCLIP12.84□□□□□ -0.353e-18■■■■■ 27.3
CTNNB1-201ENST00000349496 EWSR1Q01844 656 aaKnown RBP eCLIP10.58□□□□□ -0.729e-8■■■■■ 27.3
CTNNB1-201ENST00000349496 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.43□□□□□ -0.264e-8■■■■□ 26.7
CTNNB1-201ENST00000349496 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.37□□□□□ -0.594e-7■■■■□ 26.3
CTNNB1-201ENST00000349496 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.46■□□□□ 0.071e-7■■■■□ 25.3
CTNNB1-201ENST00000349496 QKIQ96PU8 341 aaKnown RBP eCLIP12.38□□□□□ -0.435e-9■■■■□ 25.1
CTNNB1-201ENST00000349496 FXR2P51116 673 aaKnown RBP eCLIP12.23□□□□□ -0.451e-8■■■■□ 23
CTNNB1-201ENST00000349496 PTBP1P26599 531 aaKnown RBP eCLIP11.86□□□□□ -0.511e-9■■■■□ 22.8
CTNNB1-201ENST00000349496 RPS3P23396 243 aaKnown RBP eCLIP12.2□□□□□ -0.463e-7■■■■□ 22.8
CTNNB1-201ENST00000349496 BCCIPQ9P287 314 aaKnown RBP eCLIP15.68■□□□□ 0.19e-7■■■■□ 21.8
CTNNB1-201ENST00000349496 EIF3HO15372 352 aaKnown RBP eCLIP13.68□□□□□ -0.223e-6■■■■□ 20.7
CTNNB1-201ENST00000349496 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.78□□□□□ -0.045e-8■■■■□ 19.5
CTNNB1-201ENST00000349496 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.74□□□□□ -0.213e-7■■■■□ 19.4
CTNNB1-201ENST00000349496 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.62□□□□□ -0.552e-6■■■■□ 19.4
CTNNB1-201ENST00000349496 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.17□□□□□ -0.948e-7■■■■□ 19.3
CTNNB1-201ENST00000349496 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.14□□□□□ -0.472e-8■■■□□ 19.2
CTNNB1-201ENST00000349496 HNRNPMP52272 730 aaKnown RBP eCLIP15.45■□□□□ 0.068e-8■■■□□ 18.5
CTNNB1-201ENST00000349496 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.03□□□□□ -0.649e-8■■■□□ 18.2
CTNNB1-201ENST00000349496 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.81□□□□□ -0.525e-7■■■□□ 18.2
CTNNB1-201ENST00000349496 EFTUD2Q15029 972 aaKnown RBP eCLIP12.74□□□□□ -0.372e-6■■■□□ 17.4
CTNNB1-201ENST00000349496 ZRANB2O95218 330 aaKnown RBP eCLIP13.97□□□□□ -0.172e-8■■■□□ 17.4
CTNNB1-201ENST00000349496 NONOQ15233 471 aaKnown RBP eCLIP12.71□□□□□ -0.371e-8■■■□□ 17.3
CTNNB1-201ENST00000349496 G3BP1Q13283 466 aaKnown RBP eCLIP13.58□□□□□ -0.241e-9■■■□□ 17.2
CTNNB1-201ENST00000349496 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.34□□□□□ -0.277e-7■■■□□ 17.2
CTNNB1-201ENST00000349496 SMNDC1O75940 238 aaKnown RBP eCLIP13.61□□□□□ -0.234e-7■■■□□ 17.2
CTNNB1-201ENST00000349496 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.64□□□□□ -0.394e-11■■■□□ 17.1
CTNNB1-201ENST00000349496 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.37□□□□□ -0.593e-6■■■□□ 17
CTNNB1-201ENST00000349496 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.49□□□□□ -0.091e-7■■■□□ 16.9
CTNNB1-201ENST00000349496 YBX3P16989 372 aaKnown RBP eCLIP11.74□□□□□ -0.536e-13■■■□□ 16.8
CTNNB1-201ENST00000349496 FTOQ9C0B1 505 aaKnown RBP eCLIP13.65□□□□□ -0.221e-6■■■□□ 16.3
CTNNB1-201ENST00000349496 SF3B4Q15427 424 aaKnown RBP eCLIP12.9□□□□□ -0.345e-7■■■□□ 16.2
CTNNB1-201ENST00000349496 RBM22Q9NW64 420 aaKnown RBP eCLIP11.29□□□□□ -0.61e-7■■■□□ 15.6
CTNNB1-201ENST00000349496 METAP2P50579 478 aaKnown RBP eCLIP12.94□□□□□ -0.346e-8■■■□□ 15.2
CTNNB1-201ENST00000349496 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.33□□□□□ -0.281e-26■■■□□ 15.2
CTNNB1-201ENST00000349496 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.54□□□□□ -0.42e-12■■■□□ 14.9
CTNNB1-201ENST00000349496 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.08□□□□□ -0.161e-6■■■□□ 14.7
CTNNB1-201ENST00000349496 SND1Q7KZF4 910 aaKnown RBP eCLIP13.6□□□□□ -0.238e-9■■■□□ 14.7
CTNNB1-201ENST00000349496 PPIGQ13427 754 aaKnown RBP eCLIP11.35□□□□□ -0.593e-7■■■□□ 14.6
CTNNB1-201ENST00000349496 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.37■□□□□ 0.059e-12■■□□□ 14.1
CTNNB1-201ENST00000349496 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.31□□□□□ -0.441e-9■■□□□ 14
CTNNB1-201ENST00000349496 FMR1Q06787 632 aaKnown RBP eCLIP13.01□□□□□ -0.332e-6■■□□□ 13.7
CTNNB1-201ENST00000349496 NCBP2P52298 156 aaKnown RBP eCLIP10.61□□□□□ -0.718e-8■■□□□ 13.3
CTNNB1-201ENST00000349496 CDC40O60508 579 aaKnown RBP eCLIP11.49□□□□□ -0.574e-9■■□□□ 13.2
CTNNB1-201ENST00000349496 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.88□□□□□ -0.352e-6■■□□□ 13.1
CTNNB1-201ENST00000349496 KHSRPQ92945 711 aaKnown RBP eCLIP11.67□□□□□ -0.541e-7■■□□□ 12.7
CTNNB1-201ENST00000349496 PABPC4Q13310 644 aaKnown RBP eCLIP13.4□□□□□ -0.266e-10■■□□□ 11.9
CTNNB1-201ENST00000349496 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.75□□□□□ -0.532e-6■□□□□ 11.2
CTNNB1-201ENST00000349496 RBM15Q96T37 977 aaKnown RBP eCLIP12.7□□□□□ -0.383e-10■□□□□ 10.7
CTNNB1-201ENST00000349496 FUBP3Q96I24 572 aaKnown RBP eCLIP11.2□□□□□ -0.622e-7■□□□□ 10.7
CTNNB1-201ENST00000349496 SRSF9Q13242 221 aaKnown RBP eCLIP10.19□□□□□ -0.784e-8■□□□□ 10.6
CTNNB1-201ENST00000349496 SFPQP23246 707 aaKnown RBP eCLIP13.95□□□□□ -0.184e-7■□□□□ 10.5
CTNNB1-201ENST00000349496 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.99□□□□□ -0.335e-8■□□□□ 10.5
CTNNB1-201ENST00000349496 PABPN1Q86U42 306 aaKnown RBP eCLIP17.83■□□□□ 0.451e-9■□□□□ 10.5
CTNNB1-201ENST00000349496 U2AF2P26368 475 aaKnown RBP eCLIP15.08■□□□□ 03e-9■□□□□ 10.3
CTNNB1-201ENST00000349496 ZC3H11AO75152 810 aaKnown RBP eCLIP12.77□□□□□ -0.378e-7■□□□□ 10.2
CTNNB1-201ENST00000349496 GPKOWQ92917 476 aaPredicted RBP eCLIP12.79□□□□□ -0.367e-6■□□□□ 10
CTNNB1-201ENST00000349496 XRCC6P12956 609 aaKnown RBP eCLIP15.59■□□□□ 0.096e-9■□□□□ 9.9
CTNNB1-201ENST00000349496 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.65□□□□□ -0.061e-6■□□□□ 9.9
CTNNB1-201ENST00000349496 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.73□□□□□ -0.215e-6■□□□□ 9.7
CTNNB1-201ENST00000349496 DDX6P26196 483 aaKnown RBP eCLIP12.23□□□□□ -0.456e-10■□□□□ 9.7
CTNNB1-201ENST00000349496 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.35□□□□□ -0.438e-9■□□□□ 9.3
CTNNB1-201ENST00000349496 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14□□□□□ -0.175e-6■□□□□ 9.1
CTNNB1-201ENST00000349496 TIAL1Q01085 375 aaKnown RBP eCLIP11.11□□□□□ -0.632e-8■□□□□ 9
CTNNB1-201ENST00000349496 SRSF1Q07955 248 aaKnown RBP eCLIP10.27□□□□□ -0.779e-7■□□□□ 8.9
CTNNB1-201ENST00000349496 HNRNPCP07910 306 aaKnown RBP eCLIP13.72□□□□□ -0.211e-8■□□□□ 8.8
CTNNB1-201ENST00000349496 LARP4Q71RC2 724 aaKnown RBP eCLIP11.5□□□□□ -0.574e-7■□□□□ 8.8
CTNNB1-201ENST00000349496 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.56□□□□□ -0.42e-6■□□□□ 8.7
CTNNB1-201ENST00000349496 EIF3DO15371 548 aaKnown RBP eCLIP11.92□□□□□ -0.56e-8■□□□□ 8.6
CTNNB1-201ENST00000349496 HNRNPLP14866 589 aaKnown RBP eCLIP11.99□□□□□ -0.498e-9■□□□□ 8.4
Retrieved 85 of 85 RNA–protein pairs in 39.3 ms