RNA–Protein interactions for RNA: ENST00000343304.10

LRRC41-201, Transcript of leucine rich repeat containing 41, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRRC41, Length 2,947 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC41-201ENST00000343304 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.79■□□□□ 0.122e-6■■■■■ 117.5
LRRC41-201ENST00000343304 SF3B4Q15427 424 aaKnown RBP eCLIP13.9□□□□□ -0.182e-14■■■■■ 73.1
LRRC41-201ENST00000343304 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.21■□□□□ 0.187e-8■■■■■ 50.2
LRRC41-201ENST00000343304 SF3B1O75533 1304 aaKnown RBP eCLIP15.21■□□□□ 0.021e-7■■■■■ 44.4
LRRC41-201ENST00000343304 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.44■□□□□ 0.062e-6■■■■■ 42.2
LRRC41-201ENST00000343304 PCBP2Q15366 365 aaKnown RBP eCLIP14.6□□□□□ -0.074e-11■■■■■ 42
LRRC41-201ENST00000343304 FTOQ9C0B1 505 aaKnown RBP eCLIP17.26■□□□□ 0.355e-8■■■■■ 37.8
LRRC41-201ENST00000343304 FMR1Q06787 632 aaKnown RBP eCLIP16.87■□□□□ 0.295e-10■■■■■ 37
LRRC41-201ENST00000343304 GTF2F1P35269 517 aaKnown RBP eCLIP17.4■□□□□ 0.384e-7■■■■■ 36.8
LRRC41-201ENST00000343304 AQRO60306 1485 aaKnown RBP eCLIP21.73■■□□□ 1.071e-7■■■■■ 32.5
LRRC41-201ENST00000343304 HNRNPUQ00839 825 aaKnown RBP eCLIP20.46■□□□□ 0.872e-9■■■■■ 29.3
LRRC41-201ENST00000343304 PCBP1Q15365 356 aaKnown RBP eCLIP15.2■□□□□ 0.022e-7■■■■■ 29.2
LRRC41-201ENST00000343304 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.7□□□□□ -0.223e-10■■■■□ 26.6
LRRC41-201ENST00000343304 NONOQ15233 471 aaKnown RBP eCLIP16.55■□□□□ 0.245e-7■■■■□ 26.3
LRRC41-201ENST00000343304 TIA1P31483 386 aaKnown RBP eCLIP14.22□□□□□ -0.139e-12■■■■□ 25.4
LRRC41-201ENST00000343304 METAP2P50579 478 aaKnown RBP eCLIP17.13■□□□□ 0.331e-6■■■■□ 25.4
LRRC41-201ENST00000343304 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.69□□□□□ -0.066e-7■■■■□ 25.1
LRRC41-201ENST00000343304 WDR43Q15061 677 aaKnown RBP eCLIP19.5■□□□□ 0.715e-7■■■■□ 23.4
LRRC41-201ENST00000343304 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.35■□□□□ 0.058e-7■■■■□ 22.2
LRRC41-201ENST00000343304 TIAL1Q01085 375 aaKnown RBP eCLIP14.76□□□□□ -0.051e-8■■■■□ 22.2
LRRC41-201ENST00000343304 LSM11P83369 360 aaKnown RBP eCLIP13.88□□□□□ -0.194e-6■■■■□ 22.2
LRRC41-201ENST00000343304 PRPF4O43172 522 aaKnown RBP eCLIP15.61■□□□□ 0.091e-7■■■■□ 22.1
LRRC41-201ENST00000343304 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.71■□□□□ 0.14e-8■■■■□ 21.9
LRRC41-201ENST00000343304 FKBP4Q02790 459 aaKnown RBP eCLIP17.27■□□□□ 0.362e-7■■■■□ 21.6
LRRC41-201ENST00000343304 RBM15Q96T37 977 aaKnown RBP eCLIP15.64■□□□□ 0.095e-8■■■■□ 21.5
LRRC41-201ENST00000343304 FXR2P51116 673 aaKnown RBP eCLIP16.48■□□□□ 0.235e-6■■■■□ 21.3
LRRC41-201ENST00000343304 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.76□□□□□ -0.052e-6■■■■□ 20.9
LRRC41-201ENST00000343304 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.17□□□□□ -0.141e-7■■■■□ 20.9
LRRC41-201ENST00000343304 PTBP1P26599 531 aaKnown RBP eCLIP13.86□□□□□ -0.191e-26■■■■□ 20.7
LRRC41-201ENST00000343304 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.58■□□□□ 0.42e-6■■■■□ 20.5
LRRC41-201ENST00000343304 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.42■■□□□ 1.022e-10■■■■□ 20.1
LRRC41-201ENST00000343304 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.91□□□□□ -0.663e-9■■■■□ 20.1
LRRC41-201ENST00000343304 PABPC4Q13310 644 aaKnown RBP eCLIP16.18■□□□□ 0.185e-8■■■■□ 19.8
LRRC41-201ENST00000343304 AARSP49588 968 aaKnown RBP eCLIP16.42■□□□□ 0.221e-6■■■■□ 19.6
LRRC41-201ENST00000343304 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.15□□□□□ -0.142e-6■■■■□ 19.5
LRRC41-201ENST00000343304 RPS3P23396 243 aaKnown RBP eCLIP14.55□□□□□ -0.089e-7■■■■□ 19.5
LRRC41-201ENST00000343304 EWSR1Q01844 656 aaKnown RBP eCLIP12.71□□□□□ -0.372e-7■■■□□ 17.7
LRRC41-201ENST00000343304 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.23■□□□□ 0.032e-6■■■□□ 17.1
LRRC41-201ENST00000343304 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.22■□□□□ 0.192e-6■■■□□ 17
LRRC41-201ENST00000343304 SF3A3Q12874 501 aaKnown RBP eCLIP15.62■□□□□ 0.095e-8■■■□□ 17
LRRC41-201ENST00000343304 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.99■□□□□ 0.151e-6■■■□□ 16.6
LRRC41-201ENST00000343304 DDX42Q86XP3 938 aaKnown RBP eCLIP16.02■□□□□ 0.163e-6■■■□□ 16.1
LRRC41-201ENST00000343304 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.79■□□□□ 0.121e-6■■■□□ 15.9
LRRC41-201ENST00000343304 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.8■□□□□ 0.284e-8■■■□□ 15.6
LRRC41-201ENST00000343304 DDX3XO00571 662 aaKnown RBP eCLIP16.1■□□□□ 0.173e-8■■■□□ 15.4
LRRC41-201ENST00000343304 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.23■□□□□ 0.351e-6■■■□□ 14.8
LRRC41-201ENST00000343304 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.52■□□□□ 0.886e-7■■■□□ 14.8
LRRC41-201ENST00000343304 DDX6P26196 483 aaKnown RBP eCLIP14.15□□□□□ -0.142e-6■■■□□ 14.7
LRRC41-201ENST00000343304 PPIGQ13427 754 aaKnown RBP eCLIP14.34□□□□□ -0.113e-8■■□□□ 14.5
LRRC41-201ENST00000343304 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.76■□□□□ 0.431e-6■■□□□ 14.2
LRRC41-201ENST00000343304 QKIQ96PU8 341 aaKnown RBP eCLIP15.28■□□□□ 0.044e-7■■□□□ 14.1
LRRC41-201ENST00000343304 RBM22Q9NW64 420 aaKnown RBP eCLIP14.91□□□□□ -0.022e-6■■□□□ 13.7
LRRC41-201ENST00000343304 G3BP1Q13283 466 aaKnown RBP eCLIP17.73■□□□□ 0.436e-7■■□□□ 13.5
LRRC41-201ENST00000343304 YBX3P16989 372 aaKnown RBP eCLIP15.7■□□□□ 0.13e-8■■□□□ 13.2
LRRC41-201ENST00000343304 FUSP35637 526 aaKnown RBP eCLIP9.51□□□□□ -0.893e-7■■□□□ 13.1
LRRC41-201ENST00000343304 EFTUD2Q15029 972 aaKnown RBP eCLIP15.45■□□□□ 0.061e-7■■□□□ 12.9
LRRC41-201ENST00000343304 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.85■□□□□ 0.775e-8■■□□□ 12.8
LRRC41-201ENST00000343304 NCBP2P52298 156 aaKnown RBP eCLIP13.93□□□□□ -0.182e-6■■□□□ 12.6
LRRC41-201ENST00000343304 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.12■□□□□ 0.171e-6■□□□□ 10.5
LRRC41-201ENST00000343304 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.61■□□□□ 0.094e-21■□□□□ 10.3
LRRC41-201ENST00000343304 MATR3P43243 847 aaKnown RBP eCLIP16.25■□□□□ 0.194e-7■□□□□ 10.2
LRRC41-201ENST00000343304 WRNQ14191 1432 aaPredicted RBP eCLIP22.94■■□□□ 1.265e-7■□□□□ 10
LRRC41-201ENST00000343304 SAFB2Q14151 953 aaKnown RBP eCLIP18.88■□□□□ 0.617e-7■□□□□ 9.1
LRRC41-201ENST00000343304 HNRNPMP52272 730 aaKnown RBP eCLIP20.13■□□□□ 0.812e-6■□□□□ 8.9
LRRC41-201ENST00000343304 U2AF2P26368 475 aaKnown RBP eCLIP17.09■□□□□ 0.338e-11■□□□□ 8.6
LRRC41-201ENST00000343304 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.3□□□□□ -0.127e-11■□□□□ 8.5
LRRC41-201ENST00000343304 SRSF1Q07955 248 aaKnown RBP eCLIP11.26□□□□□ -0.614e-7■□□□□ 8.4
LRRC41-201ENST00000343304 HNRNPLP14866 589 aaKnown RBP eCLIP14.87□□□□□ -0.033e-8■□□□□ 8.4
Retrieved 68 of 68 RNA–protein pairs in 7.5 ms