RNA–Protein interactions for RNA: ENST00000335760.9

APOBEC3B-202, Transcript of apolipoprotein B mRNA editing enzyme catalytic subunit 3B, humanhuman

TSL 1 (best)

Gene APOBEC3B, Length 1,359 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOBEC3B-202ENST00000335760 NISCHQ9Y2I1 1504 aa33.47■■■□□ 2.95
APOBEC3B-202ENST00000335760 CCDC180Q9P1Z9 1646 aa29.57■■■□□ 2.32
APOBEC3B-202ENST00000335760 ABCC9O60706 1549 aa28.61■■■□□ 2.17
APOBEC3B-202ENST00000335760 ZCCHC6Q5VYS8 1495 aaKnown RBP27.95■■■□□ 2.06
APOBEC3B-202ENST00000335760 DCAF8L2P0C7V8 631 aa27.87■■■□□ 2.05
APOBEC3B-202ENST00000335760 NACADO15069 1562 aa27.72■■■□□ 2.03
APOBEC3B-202ENST00000335760 DCAF1Q9Y4B6 1507 aa27.68■■■□□ 2.02
APOBEC3B-202ENST00000335760 RB1CC1Q8TDY2 1594 aa27.67■■■□□ 2.02
APOBEC3B-202ENST00000335760 MYO15BQ96JP2 1530 aa27.64■■■□□ 2.01
APOBEC3B-202ENST00000335760 SCRIBQ14160 1630 aa27.07■■□□□ 1.92
APOBEC3B-202ENST00000335760 UNC13AQ9UPW8 1703 aa27.06■■□□□ 1.92
APOBEC3B-202ENST00000335760 PABPN1Q86U42 306 aaKnown RBP eCLIP26.83■■□□□ 1.88
APOBEC3B-202ENST00000335760 BICRAQ9NZM4 1560 aa26.81■■□□□ 1.88
APOBEC3B-202ENST00000335760 SHROOM4Q9ULL8 1493 aa26.73■■□□□ 1.87
APOBEC3B-202ENST00000335760 EIF4G1Q04637 1599 aaKnown RBP26.08■■□□□ 1.77
APOBEC3B-202ENST00000335760 CECR2Q9BXF3 1484 aa26.04■■□□□ 1.76
APOBEC3B-202ENST00000335760 DNAJC5BQ9UF47 199 aa25.92■■□□□ 1.74
APOBEC3B-202ENST00000335760 BAZ1AQ9NRL2 1556 aaPredicted RBP25.91■■□□□ 1.74
APOBEC3B-202ENST00000335760 SMARCA4P51532 1647 aa25.89■■□□□ 1.73
APOBEC3B-202ENST00000335760 CC2D2AQ9P2K1 1620 aa25.89■■□□□ 1.73
APOBEC3B-202ENST00000335760 MROH2BQ7Z745 1585 aa25.81■■□□□ 1.72
APOBEC3B-202ENST00000335760 ATAD2BQ9ULI0 1458 aa25.66■■□□□ 1.7
APOBEC3B-202ENST00000335760 RSF1Q96T23 1441 aaPredicted RBP25.64■■□□□ 1.7
APOBEC3B-202ENST00000335760 SMARCA2P51531 1590 aa25.63■■□□□ 1.69
APOBEC3B-202ENST00000335760 PEG3Q9GZU2 1588 aa25.6■■□□□ 1.69
APOBEC3B-202ENST00000335760 WIZO95785 1651 aa25.57■■□□□ 1.68
APOBEC3B-202ENST00000335760 NCAPD3P42695 1498 aa25.56■■□□□ 1.68
APOBEC3B-202ENST00000335760 BAZ1BQ9UIG0 1483 aaKnown RBP25.47■■□□□ 1.67
APOBEC3B-202ENST00000335760 HMGXB3Q12766 1538 aa25.47■■□□□ 1.67
APOBEC3B-202ENST00000335760 SUPT5HO00267 1087 aaKnown RBP25.34■■□□□ 1.65
APOBEC3B-202ENST00000335760 TOP2AP11388 1531 aaKnown RBP25.3■■□□□ 1.64
APOBEC3B-202ENST00000335760 CCDC88BA6NC98 1476 aa25.02■■□□□ 1.6
APOBEC3B-202ENST00000335760 NESP48681 1621 aa24.88■■□□□ 1.57
APOBEC3B-202ENST00000335760 CADPSQ9ULU8 1353 aa24.86■■□□□ 1.57
APOBEC3B-202ENST00000335760 LAMC3Q9Y6N6 1575 aa24.84■■□□□ 1.57
APOBEC3B-202ENST00000335760 CFTRP13569 1480 aa24.78■■□□□ 1.56
APOBEC3B-202ENST00000335760 PDS5BQ9NTI5 1447 aa24.67■■□□□ 1.54
APOBEC3B-202ENST00000335760 PRDM2Q13029 1718 aa24.64■■□□□ 1.53
APOBEC3B-202ENST00000335760 ERCC6Q03468 1493 aa24.63■■□□□ 1.53
APOBEC3B-202ENST00000335760 KIF21AQ7Z4S6 1674 aa24.59■■□□□ 1.53
APOBEC3B-202ENST00000335760 FANCD2Q9BXW9 1451 aa24.58■■□□□ 1.53
APOBEC3B-202ENST00000335760 CEP164Q9UPV0 1460 aa24.51■■□□□ 1.51
APOBEC3B-202ENST00000335760 MRC2Q9UBG0 1479 aa24.39■■□□□ 1.5
APOBEC3B-202ENST00000335760 THOC2Q8NI27 1593 aaKnown RBP24.39■■□□□ 1.49
APOBEC3B-202ENST00000335760 URB2Q14146 1524 aaKnown RBP24.31■■□□□ 1.48
APOBEC3B-202ENST00000335760 WDR62O43379 1518 aa24.29■■□□□ 1.48
APOBEC3B-202ENST00000335760 ABCC8Q09428 1581 aa24.24■■□□□ 1.47
APOBEC3B-202ENST00000335760 TOPBP1Q92547 1522 aa24.23■■□□□ 1.47
APOBEC3B-202ENST00000335760 DNMBPQ6XZF7 1577 aa24.23■■□□□ 1.47
APOBEC3B-202ENST00000335760 CUX2O14529 1486 aa24.2■■□□□ 1.46
APOBEC3B-202ENST00000335760 CUX1P39880 1505 aa24.19■■□□□ 1.46
APOBEC3B-202ENST00000335760 WRNQ14191 1432 aaPredicted RBP eCLIP24.18■■□□□ 1.46
APOBEC3B-202ENST00000335760 SYNJ1O43426 1573 aa24.1■■□□□ 1.45
APOBEC3B-202ENST00000335760 TOP2BQ02880 1626 aa24.07■■□□□ 1.44
APOBEC3B-202ENST00000335760 BIVM-ERCC5R4GMW8 1640 aa24.07■■□□□ 1.44
APOBEC3B-202ENST00000335760 POLA1P09884 1462 aaPredicted RBP24.05■■□□□ 1.44
APOBEC3B-202ENST00000335760 FGD5Q6ZNL6 1462 aa24.05■■□□□ 1.44
APOBEC3B-202ENST00000335760 IFT140Q96RY7 1462 aa23.98■■□□□ 1.43
APOBEC3B-202ENST00000335760 SOGA1O94964 1423 aa23.97■■□□□ 1.43
APOBEC3B-202ENST00000335760 RAD54L2Q9Y4B4 1467 aa23.96■■□□□ 1.43
APOBEC3B-202ENST00000335760 TARBP1Q13395 1621 aaKnown RBP23.92■■□□□ 1.42
APOBEC3B-202ENST00000335760 TRIM41Q8WV44 630 aa23.91■■□□□ 1.42
APOBEC3B-202ENST00000335760 CHIC1Q5VXU3 224 aa23.85■■□□□ 1.41
APOBEC3B-202ENST00000335760 ZNF608Q9ULD9 1512 aaPredicted RBP23.85■■□□□ 1.41
APOBEC3B-202ENST00000335760 ABCA10Q8WWZ4 1543 aa23.82■■□□□ 1.4
APOBEC3B-202ENST00000335760 WDR97A6NE52 1622 aa23.82■■□□□ 1.4
APOBEC3B-202ENST00000335760 TDRD9Q8NDG6 1382 aaKnown RBP23.79■■□□□ 1.4
APOBEC3B-202ENST00000335760 AQRO60306 1485 aaKnown RBP eCLIP23.77■■□□□ 1.4
APOBEC3B-202ENST00000335760 EIF4G3O43432 1585 aaKnown RBP23.77■■□□□ 1.4
APOBEC3B-202ENST00000335760 ABCA5Q8WWZ7 1642 aa23.7■■□□□ 1.38
APOBEC3B-202ENST00000335760 GAPVD1Q14C86 1478 aa23.69■■□□□ 1.38
APOBEC3B-202ENST00000335760 KIF27Q86VH2 1401 aa23.65■■□□□ 1.38
APOBEC3B-202ENST00000335760 GRIN2BQ13224 1484 aa23.63■■□□□ 1.37
APOBEC3B-202ENST00000335760 PBRM1Q86U86 1689 aa23.62■■□□□ 1.37
APOBEC3B-202ENST00000335760 RUSC2Q8N2Y8 1516 aa23.57■■□□□ 1.36
APOBEC3B-202ENST00000335760 SNAPC4Q5SXM2 1469 aa23.56■■□□□ 1.36
APOBEC3B-202ENST00000335760 ERICH3Q5RHP9 1530 aa23.54■■□□□ 1.36
APOBEC3B-202ENST00000335760 MAGI1Q96QZ7 1491 aaPredicted RBP23.52■■□□□ 1.36
APOBEC3B-202ENST00000335760 IGF1RP08069 1367 aa23.51■■□□□ 1.35
APOBEC3B-202ENST00000335760 ADAMTS12P58397 1594 aa23.45■■□□□ 1.34
APOBEC3B-202ENST00000335760 FBLN2P98095 1184 aa23.44■■□□□ 1.34
APOBEC3B-202ENST00000335760 FHAD1B1AJZ9 1412 aa23.43■■□□□ 1.34
APOBEC3B-202ENST00000335760 EEA1Q15075 1411 aa23.43■■□□□ 1.34
APOBEC3B-202ENST00000335760 SYNJ2O15056 1496 aa23.43■■□□□ 1.34
APOBEC3B-202ENST00000335760 FAM9AQ8IZU1 332 aaPredicted RBP23.42■■□□□ 1.34
APOBEC3B-202ENST00000335760 CHMP7Q8WUX9 453 aaPredicted RBP23.41■■□□□ 1.34
APOBEC3B-202ENST00000335760 CUL7Q14999 1698 aa23.41■■□□□ 1.34
APOBEC3B-202ENST00000335760 CHD1O14646 1710 aa23.41■■□□□ 1.34
APOBEC3B-202ENST00000335760 CSRNP3Q8WYN3 585 aa23.38■■□□□ 1.33
APOBEC3B-202ENST00000335760 CARMIL1Q5VZK9 1371 aa23.37■■□□□ 1.33
APOBEC3B-202ENST00000335760 GRIN2AQ12879 1464 aa23.32■■□□□ 1.32
APOBEC3B-202ENST00000335760 OSCARQ8IYS5 282 aa23.29■■□□□ 1.32
APOBEC3B-202ENST00000335760 PRXQ9BXM0 1461 aa23.28■■□□□ 1.32
APOBEC3B-202ENST00000335760 RAPGEF2Q9Y4G8 1499 aa23.28■■□□□ 1.32
APOBEC3B-202ENST00000335760 AEBP2Q6ZN18 517 aaPredicted RBP23.25■■□□□ 1.31
APOBEC3B-202ENST00000335760 CEP170Q5SW79 1584 aa23.2■■□□□ 1.3
APOBEC3B-202ENST00000335760 NUP160Q12769 1436 aa23.19■■□□□ 1.3
APOBEC3B-202ENST00000335760 KIF21BO75037 1637 aa23.17■■□□□ 1.3
APOBEC3B-202ENST00000335760 CLASP1Q7Z460 1538 aa23.14■■□□□ 1.3
APOBEC3B-202ENST00000335760 EHMT2Q96KQ7 1210 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms