RNA–Protein interactions for RNA: ENST00000331758.7

SS18L1-201, Transcript of SS18L1, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SS18L1, Length 4,493 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18L1-201ENST00000331758 NISCHQ9Y2I1 1504 aa18.21■□□□□ 0.51
SS18L1-201ENST00000331758 DCAF8L2P0C7V8 631 aa17.25■□□□□ 0.35
SS18L1-201ENST00000331758 SHROOM4Q9ULL8 1493 aa16.58■□□□□ 0.25
SS18L1-201ENST00000331758 SUPT5HO00267 1087 aaKnown RBP16.49■□□□□ 0.23
SS18L1-201ENST00000331758 EHMT2Q96KQ7 1210 aa15.62■□□□□ 0.09
SS18L1-201ENST00000331758 FAM9AQ8IZU1 332 aaPredicted RBP15.44■□□□□ 0.06
SS18L1-201ENST00000331758 ABCC9O60706 1549 aa15.38■□□□□ 0.05
SS18L1-201ENST00000331758 TRIM41Q8WV44 630 aa15.28■□□□□ 0.04
SS18L1-201ENST00000331758 ZCCHC6Q5VYS8 1495 aaKnown RBP15.16■□□□□ 0.02
SS18L1-201ENST00000331758 CHIC1Q5VXU3 224 aa15.13■□□□□ 0.01
SS18L1-201ENST00000331758 CCDC180Q9P1Z9 1646 aa15.13■□□□□ 0.01
SS18L1-201ENST00000331758 PCGF6Q9BYE7 350 aa15.09■□□□□ 0.01
SS18L1-201ENST00000331758 PABPN1Q86U42 306 aaKnown RBP eCLIP15.05■□□□□ -0
SS18L1-201ENST00000331758 TTBK1Q5TCY1 1321 aaPredicted RBP15.02□□□□□ -0.01
SS18L1-201ENST00000331758 RANGAP1P46060 587 aaPredicted RBP14.96□□□□□ -0.01
SS18L1-201ENST00000331758 LOC105371045A0A1W2PR82 267 aa14.96□□□□□ -0.01
SS18L1-201ENST00000331758 APLP2Q06481 763 aa14.92□□□□□ -0.02
SS18L1-201ENST00000331758 UBTFP17480 764 aaKnown RBP14.89□□□□□ -0.03
SS18L1-201ENST00000331758 SCRIBQ14160 1630 aa14.85□□□□□ -0.03
SS18L1-201ENST00000331758 PPARGC1BQ86YN6 1023 aaKnown RBP14.79□□□□□ -0.04
SS18L1-201ENST00000331758 ATP1B4Q9UN42 357 aaPredicted RBP14.63□□□□□ -0.07
SS18L1-201ENST00000331758 TRIM26Q12899 539 aaPredicted RBP14.59□□□□□ -0.07
SS18L1-201ENST00000331758 CCER1Q8TC90 406 aaPredicted RBP14.57□□□□□ -0.08
SS18L1-201ENST00000331758 DCAF1Q9Y4B6 1507 aa14.54□□□□□ -0.08
SS18L1-201ENST00000331758 RB1CC1Q8TDY2 1594 aa14.5□□□□□ -0.09
SS18L1-201ENST00000331758 NACADO15069 1562 aa14.5□□□□□ -0.09
SS18L1-201ENST00000331758 RSF1Q96T23 1441 aaPredicted RBP14.48□□□□□ -0.09
SS18L1-201ENST00000331758 ZEB1P37275 1124 aaPredicted RBP14.46□□□□□ -0.09
SS18L1-201ENST00000331758 HRCP23327 699 aa14.41□□□□□ -0.1
SS18L1-201ENST00000331758 CECR2Q9BXF3 1484 aa14.36□□□□□ -0.11
SS18L1-201ENST00000331758 CSRNP3Q8WYN3 585 aa14.32□□□□□ -0.12
SS18L1-201ENST00000331758 HNRNPUL2Q1KMD3 747 aaKnown RBP14.32□□□□□ -0.12
SS18L1-201ENST00000331758 ITGAEP38570 1179 aa14.31□□□□□ -0.12
SS18L1-201ENST00000331758 MYO15BQ96JP2 1530 aa14.29□□□□□ -0.12
SS18L1-201ENST00000331758 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.23□□□□□ -0.13
SS18L1-201ENST00000331758 MROH2BQ7Z745 1585 aa14.17□□□□□ -0.14
SS18L1-201ENST00000331758 BAZ1AQ9NRL2 1556 aaPredicted RBP14.16□□□□□ -0.14
SS18L1-201ENST00000331758 PELP1Q8IZL8 1130 aaKnown RBP14.15□□□□□ -0.14
SS18L1-201ENST00000331758 P3H3Q8IVL6 736 aa14.08□□□□□ -0.16
SS18L1-201ENST00000331758 BAZ1BQ9UIG0 1483 aaKnown RBP14.08□□□□□ -0.16
SS18L1-201ENST00000331758 FAM50AQ14320 339 aaKnown RBP14.02□□□□□ -0.16
SS18L1-201ENST00000331758 FBLN2P98095 1184 aa14.01□□□□□ -0.17
SS18L1-201ENST00000331758 WRNQ14191 1432 aaPredicted RBP eCLIP14□□□□□ -0.17
SS18L1-201ENST00000331758 YTHDC1Q96MU7 727 aaKnown RBP13.98□□□□□ -0.17
SS18L1-201ENST00000331758 CENPBP07199 599 aaPredicted RBP13.98□□□□□ -0.17
SS18L1-201ENST00000331758 WIZO95785 1651 aa13.97□□□□□ -0.17
SS18L1-201ENST00000331758 CCDC88BA6NC98 1476 aa13.95□□□□□ -0.18
SS18L1-201ENST00000331758 ARID3CA6NKF2 412 aa13.92□□□□□ -0.18
SS18L1-201ENST00000331758 EEA1Q15075 1411 aa13.87□□□□□ -0.19
SS18L1-201ENST00000331758 SOGA1O94964 1423 aa13.86□□□□□ -0.19
SS18L1-201ENST00000331758 ABCC8Q09428 1581 aa13.86□□□□□ -0.19
SS18L1-201ENST00000331758 CLIP1P30622 1438 aa13.85□□□□□ -0.19
SS18L1-201ENST00000331758 CEP162Q5TB80 1403 aa13.85□□□□□ -0.19
SS18L1-201ENST00000331758 MYT1LQ9UL68 1186 aa13.83□□□□□ -0.2
SS18L1-201ENST00000331758 GOLGA3Q08378 1498 aa13.82□□□□□ -0.2
SS18L1-201ENST00000331758 TOP2AP11388 1531 aaKnown RBP13.81□□□□□ -0.2
SS18L1-201ENST00000331758 DIEXFQ68CQ4 756 aaKnown RBP13.81□□□□□ -0.2
SS18L1-201ENST00000331758 NEUROD1Q13562 356 aa13.81□□□□□ -0.2
SS18L1-201ENST00000331758 MYT1Q01538 1121 aa13.8□□□□□ -0.2
SS18L1-201ENST00000331758 SMARCA4P51532 1647 aa13.8□□□□□ -0.2
SS18L1-201ENST00000331758 SMARCA2P51531 1590 aa13.79□□□□□ -0.2
SS18L1-201ENST00000331758 TRIM52Q96A61 297 aa13.78□□□□□ -0.2
SS18L1-201ENST00000331758 TNIKQ9UKE5 1360 aa13.78□□□□□ -0.2
SS18L1-201ENST00000331758 ATAD2BQ9ULI0 1458 aa13.77□□□□□ -0.21
SS18L1-201ENST00000331758 KIF27Q86VH2 1401 aa13.76□□□□□ -0.21
SS18L1-201ENST00000331758 POLR3GLQ9BT43 218 aa13.73□□□□□ -0.21
SS18L1-201ENST00000331758 CEP164Q9UPV0 1460 aa13.73□□□□□ -0.21
SS18L1-201ENST00000331758 CNGB1Q14028 1251 aaPredicted RBP13.68□□□□□ -0.22
SS18L1-201ENST00000331758 ZNF777Q9ULD5 760 aaPredicted RBP13.66□□□□□ -0.22
SS18L1-201ENST00000331758 ZNF316A6NFI3 1004 aaPredicted RBP13.65□□□□□ -0.22
SS18L1-201ENST00000331758 CUX2O14529 1486 aa13.64□□□□□ -0.23
SS18L1-201ENST00000331758 CHMP7Q8WUX9 453 aaPredicted RBP13.64□□□□□ -0.23
SS18L1-201ENST00000331758 CDK11AQ9UQ88 783 aaPredicted RBP13.62□□□□□ -0.23
SS18L1-201ENST00000331758 RUSC2Q8N2Y8 1516 aa13.6□□□□□ -0.23
SS18L1-201ENST00000331758 CARMIL1Q5VZK9 1371 aa13.59□□□□□ -0.23
SS18L1-201ENST00000331758 MTUS2Q5JR59 1369 aa13.59□□□□□ -0.23
SS18L1-201ENST00000331758 CADPSQ9ULU8 1353 aa13.59□□□□□ -0.23
SS18L1-201ENST00000331758 CHIC2Q9UKJ5 165 aa13.58□□□□□ -0.24
SS18L1-201ENST00000331758 ZNF326Q5BKZ1 582 aaKnown RBP13.56□□□□□ -0.24
SS18L1-201ENST00000331758 NEFLP07196 543 aa13.56□□□□□ -0.24
SS18L1-201ENST00000331758 TDRD9Q8NDG6 1382 aaKnown RBP13.52□□□□□ -0.25
SS18L1-201ENST00000331758 ERCC6Q03468 1493 aa13.5□□□□□ -0.25
SS18L1-201ENST00000331758 GTF3C3Q9Y5Q9 886 aa13.5□□□□□ -0.25
SS18L1-201ENST00000331758 RAPGEF2Q9Y4G8 1499 aa13.48□□□□□ -0.25
SS18L1-201ENST00000331758 EIF4G1Q04637 1599 aaKnown RBP13.48□□□□□ -0.25
SS18L1-201ENST00000331758 VPS8Q8N3P4 1428 aa13.48□□□□□ -0.25
SS18L1-201ENST00000331758 PDS5BQ9NTI5 1447 aa13.48□□□□□ -0.25
SS18L1-201ENST00000331758 SCAF1Q9H7N4 1312 aaKnown RBP13.47□□□□□ -0.25
SS18L1-201ENST00000331758 NCAPD3P42695 1498 aa13.47□□□□□ -0.25
SS18L1-201ENST00000331758 KANK4Q5T7N3 995 aaPredicted RBP13.47□□□□□ -0.25
SS18L1-201ENST00000331758 RRP7BPQ9NSQ0 103 aa13.44□□□□□ -0.26
SS18L1-201ENST00000331758 BICRAQ9NZM4 1560 aa13.44□□□□□ -0.26
SS18L1-201ENST00000331758 TONSLQ96HA7 1378 aa13.42□□□□□ -0.26
SS18L1-201ENST00000331758 FANCD2Q9BXW9 1451 aa13.41□□□□□ -0.26
SS18L1-201ENST00000331758 ANP32CO43423 234 aa13.4□□□□□ -0.26
SS18L1-201ENST00000331758 FHAD1B1AJZ9 1412 aa13.38□□□□□ -0.27
SS18L1-201ENST00000331758 CCNB3Q8WWL7 1395 aa13.37□□□□□ -0.27
SS18L1-201ENST00000331758 PLEKHD1A6NEE1 506 aa13.37□□□□□ -0.27
SS18L1-201ENST00000331758 TSPY4P0CV99 314 aa13.36□□□□□ -0.27
SS18L1-201ENST00000331758 TSPY10P0CW01 314 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms