RNA–Protein interactions for RNA: ENST00000316509.10

VAMP2-201, Transcript of vesicle associated membrane protein 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP2, Length 2,153 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP2-201ENST00000316509 NISCHQ9Y2I1 1504 aa30.38■■■□□ 2.45
VAMP2-201ENST00000316509 CCDC180Q9P1Z9 1646 aa26.27■■□□□ 1.8
VAMP2-201ENST00000316509 ZCCHC6Q5VYS8 1495 aaKnown RBP25.6■■□□□ 1.69
VAMP2-201ENST00000316509 DCAF1Q9Y4B6 1507 aa25.21■■□□□ 1.63
VAMP2-201ENST00000316509 SHROOM4Q9ULL8 1493 aa24.97■■□□□ 1.59
VAMP2-201ENST00000316509 DCAF8L2P0C7V8 631 aa24.88■■□□□ 1.57
VAMP2-201ENST00000316509 MYO15BQ96JP2 1530 aa24.76■■□□□ 1.55
VAMP2-201ENST00000316509 ABCC9O60706 1549 aa24.44■■□□□ 1.5
VAMP2-201ENST00000316509 NACADO15069 1562 aa24.41■■□□□ 1.5
VAMP2-201ENST00000316509 SUPT5HO00267 1087 aaKnown RBP24.33■■□□□ 1.49
VAMP2-201ENST00000316509 SCRIBQ14160 1630 aa24.12■■□□□ 1.45
VAMP2-201ENST00000316509 RB1CC1Q8TDY2 1594 aa24.05■■□□□ 1.44
VAMP2-201ENST00000316509 RSF1Q96T23 1441 aaPredicted RBP23.74■■□□□ 1.39
VAMP2-201ENST00000316509 CHIC1Q5VXU3 224 aa23.61■■□□□ 1.37
VAMP2-201ENST00000316509 CECR2Q9BXF3 1484 aa23.5■■□□□ 1.35
VAMP2-201ENST00000316509 UNC13AQ9UPW8 1703 aa23.47■■□□□ 1.35
VAMP2-201ENST00000316509 BAZ1AQ9NRL2 1556 aaPredicted RBP23.44■■□□□ 1.34
VAMP2-201ENST00000316509 MROH2BQ7Z745 1585 aa23.43■■□□□ 1.34
VAMP2-201ENST00000316509 BICRAQ9NZM4 1560 aa23.26■■□□□ 1.31
VAMP2-201ENST00000316509 WIZO95785 1651 aa23.23■■□□□ 1.31
VAMP2-201ENST00000316509 SMARCA4P51532 1647 aa23.21■■□□□ 1.31
VAMP2-201ENST00000316509 TOP2AP11388 1531 aaKnown RBP23.08■■□□□ 1.29
VAMP2-201ENST00000316509 PABPN1Q86U42 306 aaKnown RBP eCLIP23.07■■□□□ 1.285e-10■□□□□ 10.7
VAMP2-201ENST00000316509 PEG3Q9GZU2 1588 aa22.98■■□□□ 1.27
VAMP2-201ENST00000316509 TRIM41Q8WV44 630 aa22.93■■□□□ 1.26
VAMP2-201ENST00000316509 SMARCA2P51531 1590 aa22.85■■□□□ 1.25
VAMP2-201ENST00000316509 CCDC88BA6NC98 1476 aa22.85■■□□□ 1.25
VAMP2-201ENST00000316509 EIF4G1Q04637 1599 aaKnown RBP22.82■■□□□ 1.24
VAMP2-201ENST00000316509 ATAD2BQ9ULI0 1458 aa22.76■■□□□ 1.23
VAMP2-201ENST00000316509 LOC105371045A0A1W2PR82 267 aa22.65■■□□□ 1.22
VAMP2-201ENST00000316509 BAZ1BQ9UIG0 1483 aaKnown RBP22.65■■□□□ 1.22
VAMP2-201ENST00000316509 NCAPD3P42695 1498 aa22.54■■□□□ 1.2
VAMP2-201ENST00000316509 HMGXB3Q12766 1538 aa22.51■■□□□ 1.19
VAMP2-201ENST00000316509 ABCC8Q09428 1581 aa22.42■■□□□ 1.18
VAMP2-201ENST00000316509 FAM9AQ8IZU1 332 aaPredicted RBP22.4■■□□□ 1.18
VAMP2-201ENST00000316509 EEA1Q15075 1411 aa22.37■■□□□ 1.17
VAMP2-201ENST00000316509 WRNQ14191 1432 aaPredicted RBP eCLIP22.34■■□□□ 1.17
VAMP2-201ENST00000316509 CC2D2AQ9P2K1 1620 aa22.17■■□□□ 1.14
VAMP2-201ENST00000316509 CSRNP3Q8WYN3 585 aa22.16■■□□□ 1.14
VAMP2-201ENST00000316509 SOGA1O94964 1423 aa22.15■■□□□ 1.14
VAMP2-201ENST00000316509 SYNJ1O43426 1573 aa22.15■■□□□ 1.14
VAMP2-201ENST00000316509 CFTRP13569 1480 aa22.14■■□□□ 1.13
VAMP2-201ENST00000316509 TRIM26Q12899 539 aaPredicted RBP22.12■■□□□ 1.13
VAMP2-201ENST00000316509 PCGF6Q9BYE7 350 aa22.12■■□□□ 1.13
VAMP2-201ENST00000316509 TOP2BQ02880 1626 aa22.09■■□□□ 1.13
VAMP2-201ENST00000316509 TNIKQ9UKE5 1360 aa22.06■■□□□ 1.12
VAMP2-201ENST00000316509 BIVM-ERCC5R4GMW8 1640 aa22.05■■□□□ 1.12
VAMP2-201ENST00000316509 RUSC2Q8N2Y8 1516 aa22.02■■□□□ 1.11
VAMP2-201ENST00000316509 GOLGA3Q08378 1498 aa22■■□□□ 1.11
VAMP2-201ENST00000316509 CADPSQ9ULU8 1353 aa21.98■■□□□ 1.11
VAMP2-201ENST00000316509 EHMT2Q96KQ7 1210 aa21.98■■□□□ 1.11
VAMP2-201ENST00000316509 PRDM2Q13029 1718 aa21.97■■□□□ 1.11
VAMP2-201ENST00000316509 CEP164Q9UPV0 1460 aa21.97■■□□□ 1.11
VAMP2-201ENST00000316509 KIF21BO75037 1637 aa21.95■■□□□ 1.1
VAMP2-201ENST00000316509 HRCP23327 699 aa21.94■■□□□ 1.1
VAMP2-201ENST00000316509 CEP162Q5TB80 1403 aa21.89■■□□□ 1.1
VAMP2-201ENST00000316509 CUX1P39880 1505 aa21.88■■□□□ 1.09
VAMP2-201ENST00000316509 UBTFP17480 764 aaKnown RBP21.87■■□□□ 1.09
VAMP2-201ENST00000316509 KIF27Q86VH2 1401 aa21.78■■□□□ 1.08
VAMP2-201ENST00000316509 ERICH3Q5RHP9 1530 aa21.75■■□□□ 1.07
VAMP2-201ENST00000316509 PRXQ9BXM0 1461 aa21.73■■□□□ 1.07
VAMP2-201ENST00000316509 DNAJC5BQ9UF47 199 aa21.7■■□□□ 1.06
VAMP2-201ENST00000316509 FANCD2Q9BXW9 1451 aa21.69■■□□□ 1.06
VAMP2-201ENST00000316509 RAPGEF2Q9Y4G8 1499 aa21.69■■□□□ 1.06
VAMP2-201ENST00000316509 LAMC3Q9Y6N6 1575 aa21.66■■□□□ 1.06
VAMP2-201ENST00000316509 CLIP1P30622 1438 aa21.64■■□□□ 1.05
VAMP2-201ENST00000316509 DNMBPQ6XZF7 1577 aa21.59■■□□□ 1.05
VAMP2-201ENST00000316509 FGD5Q6ZNL6 1462 aa21.59■■□□□ 1.05
VAMP2-201ENST00000316509 ZEB1P37275 1124 aaPredicted RBP21.58■■□□□ 1.05
VAMP2-201ENST00000316509 CUX2O14529 1486 aa21.55■■□□□ 1.04
VAMP2-201ENST00000316509 VPS8Q8N3P4 1428 aa21.54■■□□□ 1.04
VAMP2-201ENST00000316509 PDS5BQ9NTI5 1447 aa21.52■■□□□ 1.04
VAMP2-201ENST00000316509 IGF1RP08069 1367 aa21.52■■□□□ 1.04
VAMP2-201ENST00000316509 TOPBP1Q92547 1522 aa21.5■■□□□ 1.03
VAMP2-201ENST00000316509 NESP48681 1621 aa21.5■■□□□ 1.03
VAMP2-201ENST00000316509 ABCA10Q8WWZ4 1543 aa21.46■■□□□ 1.03
VAMP2-201ENST00000316509 PPARGC1BQ86YN6 1023 aaKnown RBP21.46■■□□□ 1.03
VAMP2-201ENST00000316509 CARMIL1Q5VZK9 1371 aa21.42■■□□□ 1.02
VAMP2-201ENST00000316509 POLA1P09884 1462 aaPredicted RBP21.42■■□□□ 1.02
VAMP2-201ENST00000316509 APLP2Q06481 763 aa21.4■■□□□ 1.02
VAMP2-201ENST00000316509 URB2Q14146 1524 aaKnown RBP21.36■■□□□ 1.01
VAMP2-201ENST00000316509 ARAP1Q96P48 1450 aa21.33■■□□□ 1.01
VAMP2-201ENST00000316509 RAD54L2Q9Y4B4 1467 aa21.32■■□□□ 1
VAMP2-201ENST00000316509 CUL7Q14999 1698 aa21.29■■□□□ 1
VAMP2-201ENST00000316509 KIF21AQ7Z4S6 1674 aa21.27■■□□□ 1
VAMP2-201ENST00000316509 ARHGAP35Q9NRY4 1499 aa21.26■□□□□ 0.99
VAMP2-201ENST00000316509 WDR97A6NE52 1622 aa21.26■□□□□ 0.99
VAMP2-201ENST00000316509 RANGAP1P46060 587 aaPredicted RBP21.23■□□□□ 0.99
VAMP2-201ENST00000316509 ABCA5Q8WWZ7 1642 aa21.19■□□□□ 0.98
VAMP2-201ENST00000316509 MRC2Q9UBG0 1479 aa21.17■□□□□ 0.98
VAMP2-201ENST00000316509 TTBK1Q5TCY1 1321 aaPredicted RBP21.17■□□□□ 0.98
VAMP2-201ENST00000316509 GAPVD1Q14C86 1478 aa21.16■□□□□ 0.98
VAMP2-201ENST00000316509 MAP3K1Q13233 1512 aa21.16■□□□□ 0.98
VAMP2-201ENST00000316509 FHAD1B1AJZ9 1412 aa21.12■□□□□ 0.97
VAMP2-201ENST00000316509 TARBP1Q13395 1621 aaKnown RBP21.12■□□□□ 0.97
VAMP2-201ENST00000316509 EFCAB5A4FU69 1503 aa21.12■□□□□ 0.97
VAMP2-201ENST00000316509 CCER1Q8TC90 406 aaPredicted RBP21.12■□□□□ 0.97
VAMP2-201ENST00000316509 TDRD9Q8NDG6 1382 aaKnown RBP21.1■□□□□ 0.97
VAMP2-201ENST00000316509 WDR62O43379 1518 aa21.06■□□□□ 0.96
VAMP2-201ENST00000316509 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms