RNA–Protein interactions for RNA: ENST00000306085.10

TRIM56-201, Transcript of tripartite motif containing 56, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TRIM56, Length 10,952 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-201ENST00000306085 PELP1Q8IZL8 1130 aaKnown RBP22.2■■□□□ 1.14
TRIM56-201ENST00000306085 DCAF8L2P0C7V8 631 aa22.1■■□□□ 1.13
TRIM56-201ENST00000306085 ERICH6Q7L0X2 663 aa21.49■■□□□ 1.03
TRIM56-201ENST00000306085 EHMT2Q96KQ7 1210 aa21.18■□□□□ 0.98
TRIM56-201ENST00000306085 MYT1Q01538 1121 aa21.15■□□□□ 0.98
TRIM56-201ENST00000306085 CCER1Q8TC90 406 aaPredicted RBP21.13■□□□□ 0.97
TRIM56-201ENST00000306085 SUPT5HO00267 1087 aaKnown RBP20.97■□□□□ 0.95
TRIM56-201ENST00000306085 APLP2Q06481 763 aa20.72■□□□□ 0.91
TRIM56-201ENST00000306085 CENPBP07199 599 aaPredicted RBP20.69■□□□□ 0.9
TRIM56-201ENST00000306085 TTBK1Q5TCY1 1321 aaPredicted RBP20.57■□□□□ 0.88
TRIM56-201ENST00000306085 NEFLP07196 543 aa20.49■□□□□ 0.87
TRIM56-201ENST00000306085 PCGF6Q9BYE7 350 aa20.36■□□□□ 0.85
TRIM56-201ENST00000306085 DAXXQ9UER7 740 aaPredicted RBP20.36■□□□□ 0.85
TRIM56-201ENST00000306085 YTHDC1Q96MU7 727 aaKnown RBP20.31■□□□□ 0.84
TRIM56-201ENST00000306085 FAM9AQ8IZU1 332 aaPredicted RBP20.3■□□□□ 0.84
TRIM56-201ENST00000306085 SHROOM4Q9ULL8 1493 aa20.29■□□□□ 0.84
TRIM56-201ENST00000306085 RANGAP1P46060 587 aaPredicted RBP20.05■□□□□ 0.8
TRIM56-201ENST00000306085 ATP1B4Q9UN42 357 aaPredicted RBP19.96■□□□□ 0.79
TRIM56-201ENST00000306085 ZEB1P37275 1124 aaPredicted RBP19.95■□□□□ 0.78
TRIM56-201ENST00000306085 ZNF316A6NFI3 1004 aaPredicted RBP19.83■□□□□ 0.76
TRIM56-201ENST00000306085 RTL5Q5HYW3 569 aaPredicted RBP19.8■□□□□ 0.76
TRIM56-201ENST00000306085 POLR3GLQ9BT43 218 aa19.65■□□□□ 0.74
TRIM56-201ENST00000306085 CLSPNQ9HAW4 1339 aa19.59■□□□□ 0.73
TRIM56-201ENST00000306085 CNGB1Q14028 1251 aaPredicted RBP19.53■□□□□ 0.72
TRIM56-201ENST00000306085 UBTFP17480 764 aaKnown RBP19.4■□□□□ 0.7
TRIM56-201ENST00000306085 SLC4A1APQ9BWU0 796 aaKnown RBP19.39■□□□□ 0.69
TRIM56-201ENST00000306085 MYT1LQ9UL68 1186 aa19.34■□□□□ 0.69
TRIM56-201ENST00000306085 CHIC1Q5VXU3 224 aa19.32■□□□□ 0.68
TRIM56-201ENST00000306085 PPARGC1BQ86YN6 1023 aaKnown RBP19.31■□□□□ 0.68
TRIM56-201ENST00000306085 TRIM41Q8WV44 630 aa19.23■□□□□ 0.67
TRIM56-201ENST00000306085 EIF5BO60841 1220 aaKnown RBP19.17■□□□□ 0.66
TRIM56-201ENST00000306085 ITGAEP38570 1179 aa19.15■□□□□ 0.66
TRIM56-201ENST00000306085 BCL11AQ9H165 835 aa19.11■□□□□ 0.65
TRIM56-201ENST00000306085 ZBTB47Q9UFB7 747 aaPredicted RBP19.07■□□□□ 0.64
TRIM56-201ENST00000306085 HRCP23327 699 aa19.04■□□□□ 0.64
TRIM56-201ENST00000306085 BCANQ96GW7 911 aa19.01■□□□□ 0.63
TRIM56-201ENST00000306085 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.99■□□□□ 0.63
TRIM56-201ENST00000306085 HNRNPUL2Q1KMD3 747 aaKnown RBP18.99■□□□□ 0.63
TRIM56-201ENST00000306085 GLIPR1L2Q4G1C9 344 aa18.99■□□□□ 0.63
TRIM56-201ENST00000306085 SLC24A1O60721 1099 aa18.92■□□□□ 0.62
TRIM56-201ENST00000306085 CDK11AQ9UQ88 783 aaPredicted RBP18.89■□□□□ 0.62
TRIM56-201ENST00000306085 ANP32BQ92688 251 aaKnown RBP18.87■□□□□ 0.61
TRIM56-201ENST00000306085 TRIM26Q12899 539 aaPredicted RBP18.87■□□□□ 0.61
TRIM56-201ENST00000306085 CANXP27824 592 aaKnown RBP18.82■□□□□ 0.6
TRIM56-201ENST00000306085 DIEXFQ68CQ4 756 aaKnown RBP18.77■□□□□ 0.6
TRIM56-201ENST00000306085 ANP32AP39687 249 aaKnown RBP18.75■□□□□ 0.59
TRIM56-201ENST00000306085 NPM2Q86SE8 214 aaKnown RBP18.71■□□□□ 0.59
TRIM56-201ENST00000306085 HSP90AA1P07900 732 aaKnown RBP18.67■□□□□ 0.58
TRIM56-201ENST00000306085 GTF3C3Q9Y5Q9 886 aa18.67■□□□□ 0.58
TRIM56-201ENST00000306085 ARXQ96QS3 562 aa18.59■□□□□ 0.57
TRIM56-201ENST00000306085 NISCHQ9Y2I1 1504 aa18.53■□□□□ 0.56
TRIM56-201ENST00000306085 ZNF326Q5BKZ1 582 aaKnown RBP18.51■□□□□ 0.55
TRIM56-201ENST00000306085 ANP32CO43423 234 aa18.5■□□□□ 0.55
TRIM56-201ENST00000306085 CDK11BP21127 795 aaKnown RBP18.49■□□□□ 0.55
TRIM56-201ENST00000306085 NEUROD1Q13562 356 aa18.48■□□□□ 0.55
TRIM56-201ENST00000306085 NEFMP07197 916 aa18.46■□□□□ 0.55
TRIM56-201ENST00000306085 NBR1Q14596 966 aa18.44■□□□□ 0.54
TRIM56-201ENST00000306085 TRIM52Q96A61 297 aa18.44■□□□□ 0.54
TRIM56-201ENST00000306085 FAM50AQ14320 339 aaKnown RBP18.43■□□□□ 0.54
TRIM56-201ENST00000306085 UPF2Q9HAU5 1272 aaKnown RBP18.38■□□□□ 0.53
TRIM56-201ENST00000306085 TNNT2P45379 298 aaPredicted RBP18.33■□□□□ 0.53
TRIM56-201ENST00000306085 LOC105371045A0A1W2PR82 267 aa18.23■□□□□ 0.51
TRIM56-201ENST00000306085 AMER1Q5JTC6 1135 aaPredicted RBP18.13■□□□□ 0.49
TRIM56-201ENST00000306085 TRIM44Q96DX7 344 aaPredicted RBP18.11■□□□□ 0.49
TRIM56-201ENST00000306085 FKBP8Q14318 412 aa18.09■□□□□ 0.49
TRIM56-201ENST00000306085 TULP1O00294 542 aaPredicted RBP18.08■□□□□ 0.48
TRIM56-201ENST00000306085 ACIN1Q9UKV3 1341 aaKnown RBP18.04■□□□□ 0.48
TRIM56-201ENST00000306085 DNTTIP2Q5QJE6 756 aaKnown RBP18.03■□□□□ 0.48
TRIM56-201ENST00000306085 PTMAP06454 111 aaKnown RBP18■□□□□ 0.47
TRIM56-201ENST00000306085 NCLP19338 710 aaKnown RBP17.97■□□□□ 0.47
TRIM56-201ENST00000306085 TPRNQ4KMQ1 711 aa17.96■□□□□ 0.47
TRIM56-201ENST00000306085 NAP1L5Q96NT1 182 aaPredicted RBP17.95■□□□□ 0.46
TRIM56-201ENST00000306085 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.94■□□□□ 0.46
TRIM56-201ENST00000306085 CCDC136Q96JN2 1154 aa17.94■□□□□ 0.46
TRIM56-201ENST00000306085 SALL2Q9Y467 1007 aaPredicted RBP17.94■□□□□ 0.46
TRIM56-201ENST00000306085 ZRSR1Q15695 479 aaKnown RBP17.93■□□□□ 0.46
TRIM56-201ENST00000306085 NCBP3Q53F19 620 aaKnown RBP17.91■□□□□ 0.46
TRIM56-201ENST00000306085 A0A0G2JS52 829 aa17.9■□□□□ 0.46
TRIM56-201ENST00000306085 MYH16Q9H6N6 1097 aa17.88■□□□□ 0.45
TRIM56-201ENST00000306085 HNRNPUQ00839 825 aaKnown RBP eCLIP17.87■□□□□ 0.45
TRIM56-201ENST00000306085 RTN4Q9NQC3 1192 aaKnown RBP17.86■□□□□ 0.45
TRIM56-201ENST00000306085 GOLGA6L22H0YM25 854 aa17.85■□□□□ 0.45
TRIM56-201ENST00000306085 FAM9BQ8IZU0 186 aa17.85■□□□□ 0.45
TRIM56-201ENST00000306085 PLPPR3Q6T4P5 718 aa17.84■□□□□ 0.45
TRIM56-201ENST00000306085 BECN1Q14457 450 aa17.83■□□□□ 0.44
TRIM56-201ENST00000306085 SCAF1Q9H7N4 1312 aaKnown RBP17.78■□□□□ 0.44
TRIM56-201ENST00000306085 ANP32EQ9BTT0 268 aa17.77■□□□□ 0.44
TRIM56-201ENST00000306085 DDRGK1Q96HY6 314 aa17.74■□□□□ 0.43
TRIM56-201ENST00000306085 STAG3Q9UJ98 1225 aa17.74■□□□□ 0.43
TRIM56-201ENST00000306085 ERICH6BQ5W0A0 696 aa17.73■□□□□ 0.43
TRIM56-201ENST00000306085 TAOK2Q9UL54 1235 aa17.73■□□□□ 0.43
TRIM56-201ENST00000306085 ESF1Q9H501 851 aaKnown RBP17.72■□□□□ 0.43
TRIM56-201ENST00000306085 IRX6P78412 446 aaPredicted RBP17.72■□□□□ 0.43
TRIM56-201ENST00000306085 PLCB2Q00722 1185 aa17.71■□□□□ 0.43
TRIM56-201ENST00000306085 GOLGA6L6A8MZA4 724 aa17.7■□□□□ 0.42
TRIM56-201ENST00000306085 ARID3CA6NKF2 412 aa17.7■□□□□ 0.42
TRIM56-201ENST00000306085 FBLN2P98095 1184 aa17.68■□□□□ 0.42
TRIM56-201ENST00000306085 CHGAP10645 457 aaKnown RBP17.68■□□□□ 0.42
TRIM56-201ENST00000306085 CLSTN1O94985 981 aa17.66■□□□□ 0.42
TRIM56-201ENST00000306085 WDR43Q15061 677 aaKnown RBP eCLIP17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms