RNA–Protein interactions for RNA: ENST00000306014.9

DDX54-201, Transcript of DEAD-box helicase 54, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene DDX54, Length 4,377 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-201ENST00000306014 NISCHQ9Y2I1 1504 aa24.09■■□□□ 1.45
DDX54-201ENST00000306014 DCAF8L2P0C7V8 631 aa22.74■■□□□ 1.23
DDX54-201ENST00000306014 SUPT5HO00267 1087 aaKnown RBP22.49■■□□□ 1.19
DDX54-201ENST00000306014 SHROOM4Q9ULL8 1493 aa22.33■■□□□ 1.17
DDX54-201ENST00000306014 PCGF6Q9BYE7 350 aa21.45■■□□□ 1.02
DDX54-201ENST00000306014 EHMT2Q96KQ7 1210 aa21.35■■□□□ 1.01
DDX54-201ENST00000306014 FAM9AQ8IZU1 332 aaPredicted RBP21.06■□□□□ 0.96
DDX54-201ENST00000306014 HRCP23327 699 aa20.88■□□□□ 0.93
DDX54-201ENST00000306014 CHIC1Q5VXU3 224 aa20.83■□□□□ 0.92
DDX54-201ENST00000306014 TRIM41Q8WV44 630 aa20.76■□□□□ 0.91
DDX54-201ENST00000306014 TTBK1Q5TCY1 1321 aaPredicted RBP20.69■□□□□ 0.9
DDX54-201ENST00000306014 LOC105371045A0A1W2PR82 267 aa20.67■□□□□ 0.9
DDX54-201ENST00000306014 ZEB1P37275 1124 aaPredicted RBP20.66■□□□□ 0.9
DDX54-201ENST00000306014 ABCC9O60706 1549 aa20.65■□□□□ 0.9
DDX54-201ENST00000306014 PPARGC1BQ86YN6 1023 aaKnown RBP20.6■□□□□ 0.89
DDX54-201ENST00000306014 TRIM26Q12899 539 aaPredicted RBP20.57■□□□□ 0.88
DDX54-201ENST00000306014 CCER1Q8TC90 406 aaPredicted RBP20.49■□□□□ 0.87
DDX54-201ENST00000306014 APLP2Q06481 763 aa20.38■□□□□ 0.85
DDX54-201ENST00000306014 CENPBP07199 599 aaPredicted RBP20.32■□□□□ 0.84
DDX54-201ENST00000306014 CCDC180Q9P1Z9 1646 aa20.3■□□□□ 0.84
DDX54-201ENST00000306014 PELP1Q8IZL8 1130 aaKnown RBP20.26■□□□□ 0.83
DDX54-201ENST00000306014 RANGAP1P46060 587 aaPredicted RBP20.2■□□□□ 0.82
DDX54-201ENST00000306014 UBTFP17480 764 aaKnown RBP20.18■□□□□ 0.82
DDX54-201ENST00000306014 YTHDC1Q96MU7 727 aaKnown RBP20.07■□□□□ 0.8
DDX54-201ENST00000306014 PABPN1Q86U42 306 aaKnown RBP eCLIP20.06■□□□□ 0.8
DDX54-201ENST00000306014 ZCCHC6Q5VYS8 1495 aaKnown RBP20■□□□□ 0.79
DDX54-201ENST00000306014 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.96■□□□□ 0.79
DDX54-201ENST00000306014 MYO15BQ96JP2 1530 aa19.83■□□□□ 0.77
DDX54-201ENST00000306014 DIEXFQ68CQ4 756 aaKnown RBP19.76■□□□□ 0.75
DDX54-201ENST00000306014 HNRNPUL2Q1KMD3 747 aaKnown RBP19.76■□□□□ 0.75
DDX54-201ENST00000306014 DCAF1Q9Y4B6 1507 aa19.72■□□□□ 0.75
DDX54-201ENST00000306014 ATP1B4Q9UN42 357 aaPredicted RBP19.66■□□□□ 0.74
DDX54-201ENST00000306014 SCRIBQ14160 1630 aa19.65■□□□□ 0.74
DDX54-201ENST00000306014 MYT1Q01538 1121 aa19.59■□□□□ 0.73
DDX54-201ENST00000306014 RB1CC1Q8TDY2 1594 aa19.56■□□□□ 0.72
DDX54-201ENST00000306014 GTF3C3Q9Y5Q9 886 aa19.55■□□□□ 0.72
DDX54-201ENST00000306014 ITGAEP38570 1179 aa19.53■□□□□ 0.72
DDX54-201ENST00000306014 NACADO15069 1562 aa19.5■□□□□ 0.71
DDX54-201ENST00000306014 NEFLP07196 543 aa19.44■□□□□ 0.7
DDX54-201ENST00000306014 ACIN1Q9UKV3 1341 aaKnown RBP19.44■□□□□ 0.7
DDX54-201ENST00000306014 ERICH6Q7L0X2 663 aa19.36■□□□□ 0.69
DDX54-201ENST00000306014 ZNF316A6NFI3 1004 aaPredicted RBP19.34■□□□□ 0.69
DDX54-201ENST00000306014 SCAF1Q9H7N4 1312 aaKnown RBP19.3■□□□□ 0.68
DDX54-201ENST00000306014 CSRNP3Q8WYN3 585 aa19.26■□□□□ 0.67
DDX54-201ENST00000306014 NEUROD1Q13562 356 aa19.23■□□□□ 0.67
DDX54-201ENST00000306014 RSF1Q96T23 1441 aaPredicted RBP19.19■□□□□ 0.66
DDX54-201ENST00000306014 FAM50AQ14320 339 aaKnown RBP19.04■□□□□ 0.64
DDX54-201ENST00000306014 BCANQ96GW7 911 aa19.03■□□□□ 0.64
DDX54-201ENST00000306014 CNGB1Q14028 1251 aaPredicted RBP18.93■□□□□ 0.62
DDX54-201ENST00000306014 MIER1Q8N108 512 aa18.91■□□□□ 0.62
DDX54-201ENST00000306014 POLR3GLQ9BT43 218 aa18.91■□□□□ 0.62
DDX54-201ENST00000306014 CECR2Q9BXF3 1484 aa18.88■□□□□ 0.61
DDX54-201ENST00000306014 CEP162Q5TB80 1403 aa18.84■□□□□ 0.61
DDX54-201ENST00000306014 BAZ1AQ9NRL2 1556 aaPredicted RBP18.82■□□□□ 0.6
DDX54-201ENST00000306014 ANP32CO43423 234 aa18.8■□□□□ 0.6
DDX54-201ENST00000306014 P3H3Q8IVL6 736 aa18.77■□□□□ 0.6
DDX54-201ENST00000306014 BAZ1BQ9UIG0 1483 aaKnown RBP18.76■□□□□ 0.59
DDX54-201ENST00000306014 CLIP1P30622 1438 aa18.72■□□□□ 0.59
DDX54-201ENST00000306014 TRIM52Q96A61 297 aa18.72■□□□□ 0.59
DDX54-201ENST00000306014 TNIKQ9UKE5 1360 aa18.68■□□□□ 0.58
DDX54-201ENST00000306014 DDX10Q13206 875 aaKnown RBP18.67■□□□□ 0.58
DDX54-201ENST00000306014 FKBP8Q14318 412 aa18.66■□□□□ 0.58
DDX54-201ENST00000306014 FBLN2P98095 1184 aa18.65■□□□□ 0.58
DDX54-201ENST00000306014 GOLGA3Q08378 1498 aa18.65■□□□□ 0.58
DDX54-201ENST00000306014 MROH2BQ7Z745 1585 aa18.64■□□□□ 0.57
DDX54-201ENST00000306014 EEA1Q15075 1411 aa18.64■□□□□ 0.57
DDX54-201ENST00000306014 CLSPNQ9HAW4 1339 aa18.63■□□□□ 0.57
DDX54-201ENST00000306014 SOGA1O94964 1423 aa18.58■□□□□ 0.56
DDX54-201ENST00000306014 CDK11AQ9UQ88 783 aaPredicted RBP18.58■□□□□ 0.56
DDX54-201ENST00000306014 WRNQ14191 1432 aaPredicted RBP eCLIP18.56■□□□□ 0.56
DDX54-201ENST00000306014 HIRIP3Q9BW71 556 aaPredicted RBP18.51■□□□□ 0.55
DDX54-201ENST00000306014 ZNF326Q5BKZ1 582 aaKnown RBP18.5■□□□□ 0.55
DDX54-201ENST00000306014 TONSLQ96HA7 1378 aa18.47■□□□□ 0.55
DDX54-201ENST00000306014 ARID3CA6NKF2 412 aa18.47■□□□□ 0.55
DDX54-201ENST00000306014 DAXXQ9UER7 740 aaPredicted RBP18.46■□□□□ 0.55
DDX54-201ENST00000306014 SMARCA2P51531 1590 aa18.46■□□□□ 0.55
DDX54-201ENST00000306014 ABCC8Q09428 1581 aa18.46■□□□□ 0.55
DDX54-201ENST00000306014 CCDC88BA6NC98 1476 aa18.46■□□□□ 0.55
DDX54-201ENST00000306014 CEP164Q9UPV0 1460 aa18.46■□□□□ 0.55
DDX54-201ENST00000306014 HNRNPUQ00839 825 aaKnown RBP eCLIP18.45■□□□□ 0.54
DDX54-201ENST00000306014 RTL5Q5HYW3 569 aaPredicted RBP18.44■□□□□ 0.54
DDX54-201ENST00000306014 WIZO95785 1651 aa18.36■□□□□ 0.53
DDX54-201ENST00000306014 ATAD2BQ9ULI0 1458 aa18.34■□□□□ 0.53
DDX54-201ENST00000306014 SUPT16HQ9Y5B9 1047 aaKnown RBP18.33■□□□□ 0.52
DDX54-201ENST00000306014 SMARCA4P51532 1647 aa18.32■□□□□ 0.52
DDX54-201ENST00000306014 MYT1LQ9UL68 1186 aa18.32■□□□□ 0.52
DDX54-201ENST00000306014 FAM9BQ8IZU0 186 aa18.32■□□□□ 0.52
DDX54-201ENST00000306014 IRX6P78412 446 aaPredicted RBP18.3■□□□□ 0.52
DDX54-201ENST00000306014 CHIC2Q9UKJ5 165 aa18.3■□□□□ 0.52
DDX54-201ENST00000306014 SIN3AQ96ST3 1273 aa18.27■□□□□ 0.52
DDX54-201ENST00000306014 VPS8Q8N3P4 1428 aa18.27■□□□□ 0.52
DDX54-201ENST00000306014 TOP2AP11388 1531 aaKnown RBP18.27■□□□□ 0.51
DDX54-201ENST00000306014 ERCC6Q03468 1493 aa18.25■□□□□ 0.51
DDX54-201ENST00000306014 KANK4Q5T7N3 995 aaPredicted RBP18.22■□□□□ 0.51
DDX54-201ENST00000306014 CHMP7Q8WUX9 453 aaPredicted RBP18.21■□□□□ 0.51
DDX54-201ENST00000306014 MTUS2Q5JR59 1369 aa18.21■□□□□ 0.51
DDX54-201ENST00000306014 KIF27Q86VH2 1401 aa18.2■□□□□ 0.5
DDX54-201ENST00000306014 ZNF777Q9ULD5 760 aaPredicted RBP18.2■□□□□ 0.5
DDX54-201ENST00000306014 CCNB3Q8WWL7 1395 aa18.19■□□□□ 0.5
DDX54-201ENST00000306014 RUSC2Q8N2Y8 1516 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms