RNA–Protein interactions for RNA: ENST00000301453.7

OTUB1-201, Transcript of OTU deubiquitinase, ubiquitin aldehyde binding 1, humanhuman

TSL 2

Gene OTUB1, Length 2,493 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
OTUB1-201ENST00000301453 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.65■□□□□ 0.14e-62■■■■■ 36.2
OTUB1-201ENST00000301453 FMR1Q06787 632 aaKnown RBP eCLIP18.74■□□□□ 0.592e-22■■□□□ 13.5
OTUB1-201ENST00000301453 RBFOX2O43251 390 aaKnown RBP eCLIP13.49□□□□□ -0.251e-12■□□□□ 10.9
OTUB1-201ENST00000301453 DDX3XO00571 662 aaKnown RBP eCLIP17.82■□□□□ 0.441e-11■■■■□ 22.1
OTUB1-201ENST00000301453 LARP4Q71RC2 724 aaKnown RBP eCLIP16.38■□□□□ 0.211e-10■■□□□ 12.3
OTUB1-201ENST00000301453 PCBP1Q15365 356 aaKnown RBP eCLIP16.52■□□□□ 0.232e-10■■■■□ 25.6
OTUB1-201ENST00000301453 AQRO60306 1485 aaKnown RBP eCLIP23.44■■□□□ 1.343e-10■■■■■ 44.3
OTUB1-201ENST00000301453 SF3A3Q12874 501 aaKnown RBP eCLIP17.54■□□□□ 0.46e-10■■■□□ 14.8
OTUB1-201ENST00000301453 SF3B4Q15427 424 aaKnown RBP eCLIP15.58■□□□□ 0.084e-9■■■■■ 51.9
OTUB1-201ENST00000301453 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.51■□□□□ 0.074e-9■■■■■ 37.2
OTUB1-201ENST00000301453 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.79■□□□□ 0.442e-8■□□□□ 9.5
OTUB1-201ENST00000301453 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.91■□□□□ 0.32e-8■■■□□ 18.3
OTUB1-201ENST00000301453 NCBP2P52298 156 aaKnown RBP eCLIP15.34■□□□□ 0.052e-8■□□□□ 9.5
OTUB1-201ENST00000301453 PABPC4Q13310 644 aaKnown RBP eCLIP17.88■□□□□ 0.455e-8■■■■□ 19.6
OTUB1-201ENST00000301453 SRSF1Q07955 248 aaKnown RBP eCLIP12.37□□□□□ -0.438e-8■□□□□ 11.3
OTUB1-201ENST00000301453 UPF1Q92900 1129 aaKnown RBP eCLIP16■□□□□ 0.159e-8■■■□□ 18.2
OTUB1-201ENST00000301453 DDX6P26196 483 aaKnown RBP eCLIP15.39■□□□□ 0.051e-7■■□□□ 14.2
OTUB1-201ENST00000301453 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.6■□□□□ 0.411e-7■■■■■ 54.3
OTUB1-201ENST00000301453 PCBP2Q15366 365 aaKnown RBP eCLIP16.05■□□□□ 0.162e-7■■□□□ 13.3
OTUB1-201ENST00000301453 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.57■□□□□ 0.723e-7■□□□□ 8.4
OTUB1-201ENST00000301453 EFTUD2Q15029 972 aaKnown RBP eCLIP17.19■□□□□ 0.343e-7■■■□□ 15.2
OTUB1-201ENST00000301453 ZNF622Q969S3 477 aaKnown RBP eCLIP17.6■□□□□ 0.413e-7■□□□□ 11.3
OTUB1-201ENST00000301453 G3BP1Q13283 466 aaKnown RBP eCLIP19.49■□□□□ 0.714e-7■■□□□ 14.4
OTUB1-201ENST00000301453 PTBP1P26599 531 aaKnown RBP eCLIP15.18■□□□□ 0.026e-7■□□□□ 9.8
OTUB1-201ENST00000301453 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.91■■□□□ 1.17e-7■□□□□ 11.3
OTUB1-201ENST00000301453 PABPN1Q86U42 306 aaKnown RBP eCLIP25.19■■□□□ 1.628e-7■■■■□ 25.6
OTUB1-201ENST00000301453 PPIGQ13427 754 aaKnown RBP eCLIP15.69■□□□□ 0.19e-7■■■□□ 14.8
OTUB1-201ENST00000301453 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.17□□□□□ -0.461e-6■□□□□ 10.6
OTUB1-201ENST00000301453 NIPBLQ6KC79 2804 aaeCLIP11.66□□□□□ -0.541e-6■□□□□ 11.1
OTUB1-201ENST00000301453 U2AF2P26368 475 aaKnown RBP eCLIP19.01■□□□□ 0.632e-6■□□□□ 10.6
OTUB1-201ENST00000301453 RPS3P23396 243 aaKnown RBP eCLIP15.94■□□□□ 0.142e-6■■■■□ 19.8
OTUB1-201ENST00000301453 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.6■□□□□ 0.092e-6■■■□□ 17
OTUB1-201ENST00000301453 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.36■□□□□ 0.053e-6■■■□□ 15.4
OTUB1-201ENST00000301453 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.74■□□□□ 0.593e-6■□□□□ 9.5
OTUB1-201ENST00000301453 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.39■■□□□ 1.344e-6■■■■■ 30.2
OTUB1-201ENST00000301453 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.88■□□□□ 0.615e-6■■□□□ 11.5
OTUB1-201ENST00000301453 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.89■□□□□ 0.298e-6■■■□□ 14.7
Retrieved 37 of 37 RNA–protein pairs in 11.2 ms