RNA–Protein interactions for RNA: ENST00000300413.9

SNRPD1-201, Transcript of small nuclear ribonucleoprotein D1 polypeptide, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRPD1, Length 4,909 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPD1-201ENST00000300413 NISCHQ9Y2I1 1504 aa16.41■□□□□ 0.22
SNRPD1-201ENST00000300413 DCAF8L2P0C7V8 631 aa15.05■□□□□ 0
SNRPD1-201ENST00000300413 SHROOM4Q9ULL8 1493 aa14.17□□□□□ -0.14
SNRPD1-201ENST00000300413 CCDC180Q9P1Z9 1646 aa14.09□□□□□ -0.15
SNRPD1-201ENST00000300413 SUPT5HO00267 1087 aaKnown RBP14.05□□□□□ -0.16
SNRPD1-201ENST00000300413 ABCC9O60706 1549 aa13.89□□□□□ -0.19
SNRPD1-201ENST00000300413 ZCCHC6Q5VYS8 1495 aaKnown RBP13.66□□□□□ -0.22
SNRPD1-201ENST00000300413 RB1CC1Q8TDY2 1594 aa13.48□□□□□ -0.25
SNRPD1-201ENST00000300413 NACADO15069 1562 aa13.47□□□□□ -0.25
SNRPD1-201ENST00000300413 DCAF1Q9Y4B6 1507 aa13.43□□□□□ -0.26
SNRPD1-201ENST00000300413 PABPN1Q86U42 306 aaKnown RBP eCLIP13.34□□□□□ -0.27
SNRPD1-201ENST00000300413 FAM9AQ8IZU1 332 aaPredicted RBP13.33□□□□□ -0.28
SNRPD1-201ENST00000300413 TRIM41Q8WV44 630 aa13.29□□□□□ -0.28
SNRPD1-201ENST00000300413 SCRIBQ14160 1630 aa13.28□□□□□ -0.28
SNRPD1-201ENST00000300413 MYO15BQ96JP2 1530 aa13.26□□□□□ -0.29
SNRPD1-201ENST00000300413 APLP2Q06481 763 aa13.17□□□□□ -0.3
SNRPD1-201ENST00000300413 EHMT2Q96KQ7 1210 aa12.98□□□□□ -0.33
SNRPD1-201ENST00000300413 UBTFP17480 764 aaKnown RBP12.95□□□□□ -0.34
SNRPD1-201ENST00000300413 BAZ1AQ9NRL2 1556 aaPredicted RBP12.9□□□□□ -0.34
SNRPD1-201ENST00000300413 CHIC1Q5VXU3 224 aa12.9□□□□□ -0.34
SNRPD1-201ENST00000300413 RSF1Q96T23 1441 aaPredicted RBP12.82□□□□□ -0.36
SNRPD1-201ENST00000300413 BAZ1BQ9UIG0 1483 aaKnown RBP12.79□□□□□ -0.36
SNRPD1-201ENST00000300413 RANGAP1P46060 587 aaPredicted RBP12.72□□□□□ -0.37
SNRPD1-201ENST00000300413 SMARCA2P51531 1590 aa12.72□□□□□ -0.37
SNRPD1-201ENST00000300413 ATP1B4Q9UN42 357 aaPredicted RBP12.7□□□□□ -0.38
SNRPD1-201ENST00000300413 CECR2Q9BXF3 1484 aa12.64□□□□□ -0.39
SNRPD1-201ENST00000300413 CSRNP3Q8WYN3 585 aa12.57□□□□□ -0.4
SNRPD1-201ENST00000300413 MROH2BQ7Z745 1585 aa12.56□□□□□ -0.4
SNRPD1-201ENST00000300413 EEA1Q15075 1411 aa12.54□□□□□ -0.4
SNRPD1-201ENST00000300413 TOP2AP11388 1531 aaKnown RBP12.51□□□□□ -0.41
SNRPD1-201ENST00000300413 ZEB1P37275 1124 aaPredicted RBP12.51□□□□□ -0.41
SNRPD1-201ENST00000300413 SMARCA4P51532 1647 aa12.51□□□□□ -0.41
SNRPD1-201ENST00000300413 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.5□□□□□ -0.41
SNRPD1-201ENST00000300413 HNRNPUL2Q1KMD3 747 aaKnown RBP12.5□□□□□ -0.41
SNRPD1-201ENST00000300413 TTBK1Q5TCY1 1321 aaPredicted RBP12.49□□□□□ -0.41
SNRPD1-201ENST00000300413 WRNQ14191 1432 aaPredicted RBP eCLIP12.48□□□□□ -0.41
SNRPD1-201ENST00000300413 ATAD2BQ9ULI0 1458 aa12.48□□□□□ -0.41
SNRPD1-201ENST00000300413 LOC105371045A0A1W2PR82 267 aa12.47□□□□□ -0.41
SNRPD1-201ENST00000300413 PCGF6Q9BYE7 350 aa12.46□□□□□ -0.41
SNRPD1-201ENST00000300413 PDS5BQ9NTI5 1447 aa12.45□□□□□ -0.42
SNRPD1-201ENST00000300413 FBLN2P98095 1184 aa12.44□□□□□ -0.42
SNRPD1-201ENST00000300413 TRIM26Q12899 539 aaPredicted RBP12.44□□□□□ -0.42
SNRPD1-201ENST00000300413 ERCC6Q03468 1493 aa12.43□□□□□ -0.42
SNRPD1-201ENST00000300413 CCDC88BA6NC98 1476 aa12.4□□□□□ -0.42
SNRPD1-201ENST00000300413 KIF27Q86VH2 1401 aa12.38□□□□□ -0.43
SNRPD1-201ENST00000300413 NCAPD3P42695 1498 aa12.37□□□□□ -0.43
SNRPD1-201ENST00000300413 WIZO95785 1651 aa12.36□□□□□ -0.43
SNRPD1-201ENST00000300413 CADPSQ9ULU8 1353 aa12.36□□□□□ -0.43
SNRPD1-201ENST00000300413 CCER1Q8TC90 406 aaPredicted RBP12.36□□□□□ -0.43
SNRPD1-201ENST00000300413 EIF4G1Q04637 1599 aaKnown RBP12.35□□□□□ -0.43
SNRPD1-201ENST00000300413 CDK11AQ9UQ88 783 aaPredicted RBP12.34□□□□□ -0.43
SNRPD1-201ENST00000300413 CHMP7Q8WUX9 453 aaPredicted RBP12.3□□□□□ -0.44
SNRPD1-201ENST00000300413 ABCC8Q09428 1581 aa12.29□□□□□ -0.44
SNRPD1-201ENST00000300413 GOLGA3Q08378 1498 aa12.28□□□□□ -0.44
SNRPD1-201ENST00000300413 MYT1LQ9UL68 1186 aa12.28□□□□□ -0.44
SNRPD1-201ENST00000300413 CEP164Q9UPV0 1460 aa12.26□□□□□ -0.45
SNRPD1-201ENST00000300413 HMGXB3Q12766 1538 aa12.26□□□□□ -0.45
SNRPD1-201ENST00000300413 BICRAQ9NZM4 1560 aa12.23□□□□□ -0.45
SNRPD1-201ENST00000300413 PPARGC1BQ86YN6 1023 aaKnown RBP12.21□□□□□ -0.45
SNRPD1-201ENST00000300413 NPM1P06748 294 aaKnown RBP eCLIP12.2□□□□□ -0.46
SNRPD1-201ENST00000300413 CUX2O14529 1486 aa12.18□□□□□ -0.46
SNRPD1-201ENST00000300413 ITGAEP38570 1179 aa12.17□□□□□ -0.46
SNRPD1-201ENST00000300413 CLIP1P30622 1438 aa12.17□□□□□ -0.46
SNRPD1-201ENST00000300413 FAM50AQ14320 339 aaKnown RBP12.16□□□□□ -0.46
SNRPD1-201ENST00000300413 TNIKQ9UKE5 1360 aa12.16□□□□□ -0.46
SNRPD1-201ENST00000300413 FANCD2Q9BXW9 1451 aa12.16□□□□□ -0.46
SNRPD1-201ENST00000300413 SOGA1O94964 1423 aa12.16□□□□□ -0.46
SNRPD1-201ENST00000300413 P3H3Q8IVL6 736 aa12.15□□□□□ -0.46
SNRPD1-201ENST00000300413 CC2D2AQ9P2K1 1620 aa12.14□□□□□ -0.47
SNRPD1-201ENST00000300413 CARMIL1Q5VZK9 1371 aa12.13□□□□□ -0.47
SNRPD1-201ENST00000300413 AEBP2Q6ZN18 517 aaPredicted RBP12.12□□□□□ -0.47
SNRPD1-201ENST00000300413 PEG3Q9GZU2 1588 aa12.08□□□□□ -0.48
SNRPD1-201ENST00000300413 CFTRP13569 1480 aa12.08□□□□□ -0.48
SNRPD1-201ENST00000300413 UNC13AQ9UPW8 1703 aa12.07□□□□□ -0.48
SNRPD1-201ENST00000300413 CEP162Q5TB80 1403 aa12.07□□□□□ -0.48
SNRPD1-201ENST00000300413 ACIN1Q9UKV3 1341 aaKnown RBP12.06□□□□□ -0.48
SNRPD1-201ENST00000300413 FHAD1B1AJZ9 1412 aa12.05□□□□□ -0.48
SNRPD1-201ENST00000300413 MTUS2Q5JR59 1369 aa12.04□□□□□ -0.48
SNRPD1-201ENST00000300413 CARMIL2Q6F5E8 1435 aa12.01□□□□□ -0.49
SNRPD1-201ENST00000300413 TRIM52Q96A61 297 aa12□□□□□ -0.49
SNRPD1-201ENST00000300413 PLEKHD1A6NEE1 506 aa11.99□□□□□ -0.49
SNRPD1-201ENST00000300413 RAPGEF2Q9Y4G8 1499 aa11.99□□□□□ -0.49
SNRPD1-201ENST00000300413 TDRD9Q8NDG6 1382 aaKnown RBP11.98□□□□□ -0.49
SNRPD1-201ENST00000300413 LAMC3Q9Y6N6 1575 aa11.98□□□□□ -0.49
SNRPD1-201ENST00000300413 MRC2Q9UBG0 1479 aa11.96□□□□□ -0.5
SNRPD1-201ENST00000300413 ARID3CA6NKF2 412 aa11.96□□□□□ -0.5
SNRPD1-201ENST00000300413 FGD5Q6ZNL6 1462 aa11.95□□□□□ -0.5
SNRPD1-201ENST00000300413 ZNF777Q9ULD5 760 aaPredicted RBP11.94□□□□□ -0.5
SNRPD1-201ENST00000300413 PELP1Q8IZL8 1130 aaKnown RBP11.93□□□□□ -0.5
SNRPD1-201ENST00000300413 FMN1Q68DA7 1419 aa11.92□□□□□ -0.5
SNRPD1-201ENST00000300413 TSPY4P0CV99 314 aa11.92□□□□□ -0.5
SNRPD1-201ENST00000300413 TSPY10P0CW01 314 aa11.92□□□□□ -0.5
SNRPD1-201ENST00000300413 HRCP23327 699 aa11.91□□□□□ -0.5
SNRPD1-201ENST00000300413 GAPVD1Q14C86 1478 aa11.9□□□□□ -0.5
SNRPD1-201ENST00000300413 IFT140Q96RY7 1462 aa11.89□□□□□ -0.51
SNRPD1-201ENST00000300413 ESF1Q9H501 851 aaKnown RBP11.87□□□□□ -0.51
SNRPD1-201ENST00000300413 VPS8Q8N3P4 1428 aa11.87□□□□□ -0.51
SNRPD1-201ENST00000300413 DNMBPQ6XZF7 1577 aa11.86□□□□□ -0.51
SNRPD1-201ENST00000300413 CENPBP07199 599 aaPredicted RBP11.85□□□□□ -0.51
SNRPD1-201ENST00000300413 GRIN2BQ13224 1484 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms