RNA–Protein interactions for RNA: ENST00000296255.7

RPN1-201, Transcript of ribophorin I, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPN1, Length 2,314 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPN1-201ENST00000296255 PABPC4Q13310 644 aaKnown RBP eCLIP18.28■□□□□ 0.525e-28■■■■■ 56.6
RPN1-201ENST00000296255 DDX3XO00571 662 aaKnown RBP eCLIP18.19■□□□□ 0.51e-20■■■■■ 56.9
RPN1-201ENST00000296255 YBX3P16989 372 aaKnown RBP eCLIP16.93■□□□□ 0.32e-14■■□□□ 12.6
RPN1-201ENST00000296255 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.13■□□□□ 0.172e-13■■■■■ 43.6
RPN1-201ENST00000296255 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.5■■□□□ 1.193e-13■■■□□ 19.1
RPN1-201ENST00000296255 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.15■□□□□ 0.021e-12■■■■■ 92.3
RPN1-201ENST00000296255 G3BP1Q13283 466 aaKnown RBP eCLIP19.95■□□□□ 0.781e-11■■■■■ 36.6
RPN1-201ENST00000296255 TARDBPQ13148 414 aaKnown RBP eCLIP15.78■□□□□ 0.127e-11■■■■■ 41.5
RPN1-201ENST00000296255 SUB1P53999 127 aaKnown RBP eCLIP13.39□□□□□ -0.277e-10■■■■■ 39.1
RPN1-201ENST00000296255 LARP4Q71RC2 724 aaKnown RBP eCLIP16.71■□□□□ 0.278e-10■■□□□ 13.5
RPN1-201ENST00000296255 FMR1Q06787 632 aaKnown RBP eCLIP19.11■□□□□ 0.651e-9■■□□□ 11.8
RPN1-201ENST00000296255 PABPN1Q86U42 306 aaKnown RBP eCLIP25.88■■□□□ 1.731e-8■■□□□ 12.6
RPN1-201ENST00000296255 PUM1Q14671 1186 aaKnown RBP eCLIP15.9■□□□□ 0.143e-8■■■■■ 33.8
RPN1-201ENST00000296255 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.63■□□□□ 0.094e-8■□□□□ 11.3
RPN1-201ENST00000296255 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.23■□□□□ 0.356e-8■■■■■ 29.5
RPN1-201ENST00000296255 TIA1P31483 386 aaKnown RBP eCLIP16.01■□□□□ 0.157e-8■■■□□ 15.2
RPN1-201ENST00000296255 SND1Q7KZF4 910 aaKnown RBP eCLIP18.4■□□□□ 0.549e-8■■■■□ 20.5
RPN1-201ENST00000296255 DDX6P26196 483 aaKnown RBP eCLIP15.81■□□□□ 0.121e-7■□□□□ 8.9
RPN1-201ENST00000296255 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.43□□□□□ -0.422e-7■■■■■ 28
RPN1-201ENST00000296255 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.62■□□□□ 0.252e-7■■■□□ 18.4
RPN1-201ENST00000296255 RPS3P23396 243 aaKnown RBP eCLIP16.32■□□□□ 0.22e-7■■■□□ 18.6
RPN1-201ENST00000296255 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.16■□□□□ 0.53e-7■■□□□ 14.3
RPN1-201ENST00000296255 ZC3H11AO75152 810 aaKnown RBP eCLIP17.74■□□□□ 0.435e-7■□□□□ 8.5
RPN1-201ENST00000296255 EFTUD2Q15029 972 aaKnown RBP eCLIP17.53■□□□□ 0.45e-7■■■■□ 24.4
RPN1-201ENST00000296255 PPIGQ13427 754 aaKnown RBP eCLIP16.02■□□□□ 0.157e-7■□□□□ 8.8
RPN1-201ENST00000296255 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.45■■□□□ 1.188e-7■■□□□ 11.6
RPN1-201ENST00000296255 METAP2P50579 478 aaKnown RBP eCLIP19.31■□□□□ 0.689e-7■■■■□ 20.6
RPN1-201ENST00000296255 GPKOWQ92917 476 aaPredicted RBP eCLIP18.82■□□□□ 0.61e-6■■■□□ 15
RPN1-201ENST00000296255 AQRO60306 1485 aaKnown RBP eCLIP24.09■■□□□ 1.451e-6■■■■□ 25.2
RPN1-201ENST00000296255 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.96■□□□□ 0.471e-6■■■■■ 89.7
RPN1-201ENST00000296255 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.36■□□□□ 0.371e-6■□□□□ 11.1
RPN1-201ENST00000296255 PCBP1Q15365 356 aaKnown RBP eCLIP16.96■□□□□ 0.311e-6■■□□□ 13.9
RPN1-201ENST00000296255 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.93■□□□□ 0.142e-6■■■■□ 20.6
RPN1-201ENST00000296255 TIAL1Q01085 375 aaKnown RBP eCLIP16.69■□□□□ 0.262e-6■■■■□ 24.3
RPN1-201ENST00000296255 RBM15Q96T37 977 aaKnown RBP eCLIP17.65■□□□□ 0.423e-6■■□□□ 11.6
RPN1-201ENST00000296255 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.92■□□□□ 0.784e-6■□□□□ 10.2
RPN1-201ENST00000296255 SF3B1O75533 1304 aaKnown RBP eCLIP17.05■□□□□ 0.325e-6■■■■■ 88.5
RPN1-201ENST00000296255 WDR43Q15061 677 aaKnown RBP eCLIP21.98■■□□□ 1.119e-6■■■□□ 15.6
Retrieved 38 of 38 RNA–protein pairs in 3.8 ms