RNA–Protein interactions for RNA: ENST00000295317.3

RNF149-201, Transcript of ring finger protein 149, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF149, Length 2,458 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF149-201ENST00000295317 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.62■■□□□ 1.372e-13■■■■■ 106.5
RNF149-201ENST00000295317 U2AF1Q01081 240 aaKnown RBP eCLIP28.26■■■□□ 2.111e-12■■■■■ 46.6
RNF149-201ENST00000295317 U2AF2P26368 475 aaKnown RBP eCLIP24.95■■□□□ 1.592e-12■■■■■ 43.3
RNF149-201ENST00000295317 DDX3XO00571 662 aaKnown RBP eCLIP23.51■■□□□ 1.352e-28■■■■■ 35.7
RNF149-201ENST00000295317 SF3B1O75533 1304 aaKnown RBP eCLIP22.07■■□□□ 1.125e-6■■■■■ 34.1
RNF149-201ENST00000295317 SND1Q7KZF4 910 aaKnown RBP eCLIP23.37■■□□□ 1.333e-15■■■■■ 33.5
RNF149-201ENST00000295317 SF3B4Q15427 424 aaKnown RBP eCLIP19.42■□□□□ 0.79e-8■■■■■ 29
RNF149-201ENST00000295317 RBFOX2O43251 390 aaKnown RBP eCLIP17.64■□□□□ 0.423e-8■■■■■ 28.6
RNF149-201ENST00000295317 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.26■□□□□ 0.997e-6■■■■■ 27.5
RNF149-201ENST00000295317 TIA1P31483 386 aaKnown RBP eCLIP20.73■□□□□ 0.915e-8■■■■■ 26.8
RNF149-201ENST00000295317 RBM22Q9NW64 420 aaKnown RBP eCLIP21.96■■□□□ 1.111e-8■■■■□ 23.7
RNF149-201ENST00000295317 AQRO60306 1485 aaKnown RBP eCLIP32.16■■■□□ 2.741e-6■■■■□ 22.4
RNF149-201ENST00000295317 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.02■□□□□ 0.312e-6■■■■□ 21.6
RNF149-201ENST00000295317 EFTUD2Q15029 972 aaKnown RBP eCLIP22.56■■□□□ 1.25e-12■■■■□ 19.5
RNF149-201ENST00000295317 SRSF1Q07955 248 aaKnown RBP eCLIP16.63■□□□□ 0.257e-8■■■■□ 19.3
RNF149-201ENST00000295317 TIAL1Q01085 375 aaKnown RBP eCLIP21.63■■□□□ 1.052e-6■■■□□ 17.4
RNF149-201ENST00000295317 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.68■□□□□ 0.92e-10■■■□□ 16.9
RNF149-201ENST00000295317 KHSRPQ92945 711 aaKnown RBP eCLIP22.58■■□□□ 1.217e-7■■■□□ 15.6
RNF149-201ENST00000295317 RPS3P23396 243 aaKnown RBP eCLIP21.18■□□□□ 0.988e-11■■■□□ 15.5
RNF149-201ENST00000295317 HNRNPLP14866 589 aaKnown RBP eCLIP21.72■■□□□ 1.073e-7■■■□□ 15.4
RNF149-201ENST00000295317 DDX6P26196 483 aaKnown RBP eCLIP21.01■□□□□ 0.958e-8■■■□□ 15.4
RNF149-201ENST00000295317 RBM15Q96T37 977 aaKnown RBP eCLIP22.68■■□□□ 1.226e-12■■□□□ 13.5
RNF149-201ENST00000295317 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.37■■□□□ 1.812e-6■■□□□ 12.1
RNF149-201ENST00000295317 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.78■■□□□ 1.084e-6■■□□□ 11.7
RNF149-201ENST00000295317 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.63■□□□□ 0.731e-9■□□□□ 10.6
RNF149-201ENST00000295317 FUBP3Q96I24 572 aaKnown RBP eCLIP21.86■■□□□ 1.092e-6■□□□□ 10.6
RNF149-201ENST00000295317 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.25■■□□□ 1.317e-7■□□□□ 10.6
RNF149-201ENST00000295317 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.22■■■□□ 2.431e-7■□□□□ 10.2
RNF149-201ENST00000295317 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.39■■□□□ 1.333e-18■□□□□ 10.1
RNF149-201ENST00000295317 ILF3Q12906 894 aaKnown RBP eCLIP20.23■□□□□ 0.835e-7■□□□□ 9.9
RNF149-201ENST00000295317 PPIGQ13427 754 aaKnown RBP eCLIP21.02■□□□□ 0.962e-7■□□□□ 9.4
RNF149-201ENST00000295317 SRSF9Q13242 221 aaKnown RBP eCLIP15.45■□□□□ 0.069e-7■□□□□ 9.1
RNF149-201ENST00000295317 SF3A3Q12874 501 aaKnown RBP eCLIP22.8■■□□□ 1.248e-13■□□□□ 8.9
RNF149-201ENST00000295317 SDAD1Q9NVU7 687 aaKnown RBP eCLIP21.81■■□□□ 1.085e-6■□□□□ 8.5
RNF149-201ENST00000295317 ZNF622Q969S3 477 aaKnown RBP eCLIP24.56■■□□□ 1.523e-9■□□□□ 8.4
Retrieved 35 of 35 RNA–protein pairs in 8.5 ms