RNA–Protein interactions for RNA: ENST00000294129.6

NCKIPSD-201, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,989 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-201ENST00000294129 NISCHQ9Y2I1 1504 aa33.14■■■□□ 2.9
NCKIPSD-201ENST00000294129 SHROOM4Q9ULL8 1493 aa28.47■■■□□ 2.15
NCKIPSD-201ENST00000294129 CCDC180Q9P1Z9 1646 aa28.16■■■□□ 2.1
NCKIPSD-201ENST00000294129 DCAF8L2P0C7V8 631 aa28.02■■■□□ 2.08
NCKIPSD-201ENST00000294129 ZCCHC6Q5VYS8 1495 aaKnown RBP27.95■■■□□ 2.07
NCKIPSD-201ENST00000294129 SUPT5HO00267 1087 aaKnown RBP27.81■■■□□ 2.04
NCKIPSD-201ENST00000294129 DCAF1Q9Y4B6 1507 aa27.02■■□□□ 1.92
NCKIPSD-201ENST00000294129 CHIC1Q5VXU3 224 aa26.73■■□□□ 1.87
NCKIPSD-201ENST00000294129 SCRIBQ14160 1630 aa26.62■■□□□ 1.85
NCKIPSD-201ENST00000294129 ABCC9O60706 1549 aa26.62■■□□□ 1.85
NCKIPSD-201ENST00000294129 MYO15BQ96JP2 1530 aa26.57■■□□□ 1.84
NCKIPSD-201ENST00000294129 RSF1Q96T23 1441 aaPredicted RBP26.19■■□□□ 1.78
NCKIPSD-201ENST00000294129 NACADO15069 1562 aa26.15■■□□□ 1.78
NCKIPSD-201ENST00000294129 LOC105371045A0A1W2PR82 267 aa26.08■■□□□ 1.77
NCKIPSD-201ENST00000294129 CECR2Q9BXF3 1484 aa25.99■■□□□ 1.75
NCKIPSD-201ENST00000294129 RB1CC1Q8TDY2 1594 aa25.94■■□□□ 1.74
NCKIPSD-201ENST00000294129 PCGF6Q9BYE7 350 aa25.83■■□□□ 1.73
NCKIPSD-201ENST00000294129 MROH2BQ7Z745 1585 aa25.83■■□□□ 1.73
NCKIPSD-201ENST00000294129 TRIM41Q8WV44 630 aa25.82■■□□□ 1.72
NCKIPSD-201ENST00000294129 FAM9AQ8IZU1 332 aaPredicted RBP25.77■■□□□ 1.72
NCKIPSD-201ENST00000294129 EHMT2Q96KQ7 1210 aa25.71■■□□□ 1.71
NCKIPSD-201ENST00000294129 WIZO95785 1651 aa25.7■■□□□ 1.7
NCKIPSD-201ENST00000294129 PABPN1Q86U42 306 aaKnown RBP eCLIP25.51■■□□□ 1.67
NCKIPSD-201ENST00000294129 HRCP23327 699 aa25.5■■□□□ 1.67
NCKIPSD-201ENST00000294129 BAZ1AQ9NRL2 1556 aaPredicted RBP25.47■■□□□ 1.67
NCKIPSD-201ENST00000294129 UNC13AQ9UPW8 1703 aa25.44■■□□□ 1.66
NCKIPSD-201ENST00000294129 SMARCA4P51532 1647 aa25.3■■□□□ 1.64
NCKIPSD-201ENST00000294129 TRIM26Q12899 539 aaPredicted RBP25.23■■□□□ 1.63
NCKIPSD-201ENST00000294129 PPARGC1BQ86YN6 1023 aaKnown RBP25.21■■□□□ 1.63
NCKIPSD-201ENST00000294129 TOP2AP11388 1531 aaKnown RBP25.19■■□□□ 1.62
NCKIPSD-201ENST00000294129 CCDC88BA6NC98 1476 aa25.16■■□□□ 1.62
NCKIPSD-201ENST00000294129 BICRAQ9NZM4 1560 aa25.12■■□□□ 1.61
NCKIPSD-201ENST00000294129 ABCC8Q09428 1581 aa25.11■■□□□ 1.61
NCKIPSD-201ENST00000294129 SMARCA2P51531 1590 aa25.07■■□□□ 1.6
NCKIPSD-201ENST00000294129 EIF4G1Q04637 1599 aaKnown RBP25.07■■□□□ 1.6
NCKIPSD-201ENST00000294129 SOGA1O94964 1423 aa24.83■■□□□ 1.56
NCKIPSD-201ENST00000294129 TTBK1Q5TCY1 1321 aaPredicted RBP24.8■■□□□ 1.56
NCKIPSD-201ENST00000294129 ATAD2BQ9ULI0 1458 aa24.73■■□□□ 1.55
NCKIPSD-201ENST00000294129 RUSC2Q8N2Y8 1516 aa24.72■■□□□ 1.55
NCKIPSD-201ENST00000294129 BAZ1BQ9UIG0 1483 aaKnown RBP24.71■■□□□ 1.55
NCKIPSD-201ENST00000294129 UBTFP17480 764 aaKnown RBP24.7■■□□□ 1.54
NCKIPSD-201ENST00000294129 PEG3Q9GZU2 1588 aa24.68■■□□□ 1.54
NCKIPSD-201ENST00000294129 CSRNP3Q8WYN3 585 aa24.66■■□□□ 1.54
NCKIPSD-201ENST00000294129 WRNQ14191 1432 aaPredicted RBP eCLIP24.65■■□□□ 1.54
NCKIPSD-201ENST00000294129 CEP162Q5TB80 1403 aa24.57■■□□□ 1.52
NCKIPSD-201ENST00000294129 SYNJ1O43426 1573 aa24.51■■□□□ 1.51
NCKIPSD-201ENST00000294129 ZEB1P37275 1124 aaPredicted RBP24.49■■□□□ 1.51
NCKIPSD-201ENST00000294129 EEA1Q15075 1411 aa24.47■■□□□ 1.51
NCKIPSD-201ENST00000294129 TNIKQ9UKE5 1360 aa24.46■■□□□ 1.51
NCKIPSD-201ENST00000294129 RANGAP1P46060 587 aaPredicted RBP24.46■■□□□ 1.51
NCKIPSD-201ENST00000294129 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.44■■□□□ 1.5
NCKIPSD-201ENST00000294129 GOLGA3Q08378 1498 aa24.4■■□□□ 1.5
NCKIPSD-201ENST00000294129 CCER1Q8TC90 406 aaPredicted RBP24.34■■□□□ 1.49
NCKIPSD-201ENST00000294129 CEP164Q9UPV0 1460 aa24.27■■□□□ 1.48
NCKIPSD-201ENST00000294129 NCAPD3P42695 1498 aa24.22■■□□□ 1.47
NCKIPSD-201ENST00000294129 RAPGEF2Q9Y4G8 1499 aa24.21■■□□□ 1.47
NCKIPSD-201ENST00000294129 CLIP1P30622 1438 aa24.18■■□□□ 1.46
NCKIPSD-201ENST00000294129 HMGXB3Q12766 1538 aa24.16■■□□□ 1.46
NCKIPSD-201ENST00000294129 TOP2BQ02880 1626 aa24.16■■□□□ 1.46
NCKIPSD-201ENST00000294129 KIF21BO75037 1637 aa24.15■■□□□ 1.46
NCKIPSD-201ENST00000294129 APLP2Q06481 763 aa24.06■■□□□ 1.44
NCKIPSD-201ENST00000294129 HNRNPUL2Q1KMD3 747 aaKnown RBP24.05■■□□□ 1.44
NCKIPSD-201ENST00000294129 CUX1P39880 1505 aa24.04■■□□□ 1.44
NCKIPSD-201ENST00000294129 BIVM-ERCC5R4GMW8 1640 aa24.03■■□□□ 1.44
NCKIPSD-201ENST00000294129 CFTRP13569 1480 aa23.99■■□□□ 1.43
NCKIPSD-201ENST00000294129 VPS8Q8N3P4 1428 aa23.97■■□□□ 1.43
NCKIPSD-201ENST00000294129 KIF27Q86VH2 1401 aa23.9■■□□□ 1.42
NCKIPSD-201ENST00000294129 PRXQ9BXM0 1461 aa23.87■■□□□ 1.41
NCKIPSD-201ENST00000294129 CC2D2AQ9P2K1 1620 aa23.84■■□□□ 1.41
NCKIPSD-201ENST00000294129 CADPSQ9ULU8 1353 aa23.83■■□□□ 1.41
NCKIPSD-201ENST00000294129 ERICH3Q5RHP9 1530 aa23.8■■□□□ 1.4
NCKIPSD-201ENST00000294129 CUX2O14529 1486 aa23.79■■□□□ 1.4
NCKIPSD-201ENST00000294129 ARAP1Q96P48 1450 aa23.75■■□□□ 1.39
NCKIPSD-201ENST00000294129 KANK4Q5T7N3 995 aaPredicted RBP23.73■■□□□ 1.39
NCKIPSD-201ENST00000294129 FGD5Q6ZNL6 1462 aa23.69■■□□□ 1.38
NCKIPSD-201ENST00000294129 PRDM2Q13029 1718 aa23.69■■□□□ 1.38
NCKIPSD-201ENST00000294129 IGF1RP08069 1367 aa23.66■■□□□ 1.38
NCKIPSD-201ENST00000294129 DIEXFQ68CQ4 756 aaKnown RBP23.66■■□□□ 1.38
NCKIPSD-201ENST00000294129 FANCD2Q9BXW9 1451 aa23.64■■□□□ 1.37
NCKIPSD-201ENST00000294129 NESP48681 1621 aa23.63■■□□□ 1.37
NCKIPSD-201ENST00000294129 CARMIL1Q5VZK9 1371 aa23.6■■□□□ 1.37
NCKIPSD-201ENST00000294129 ARHGAP35Q9NRY4 1499 aa23.59■■□□□ 1.37
NCKIPSD-201ENST00000294129 P3H3Q8IVL6 736 aa23.59■■□□□ 1.37
NCKIPSD-201ENST00000294129 ITGAEP38570 1179 aa23.58■■□□□ 1.37
NCKIPSD-201ENST00000294129 ATP1B4Q9UN42 357 aaPredicted RBP23.55■■□□□ 1.36
NCKIPSD-201ENST00000294129 RAD54L2Q9Y4B4 1467 aa23.55■■□□□ 1.36
NCKIPSD-201ENST00000294129 DNAJC5BQ9UF47 199 aa23.51■■□□□ 1.35
NCKIPSD-201ENST00000294129 ZNF316A6NFI3 1004 aaPredicted RBP23.49■■□□□ 1.35
NCKIPSD-201ENST00000294129 SCAF1Q9H7N4 1312 aaKnown RBP23.49■■□□□ 1.35
NCKIPSD-201ENST00000294129 TOPBP1Q92547 1522 aa23.43■■□□□ 1.34
NCKIPSD-201ENST00000294129 POLA1P09884 1462 aaPredicted RBP23.42■■□□□ 1.34
NCKIPSD-201ENST00000294129 DNMBPQ6XZF7 1577 aa23.4■■□□□ 1.34
NCKIPSD-201ENST00000294129 CCNB3Q8WWL7 1395 aa23.36■■□□□ 1.33
NCKIPSD-201ENST00000294129 RRBP1Q9P2E9 1410 aaKnown RBP23.32■■□□□ 1.32
NCKIPSD-201ENST00000294129 TDRD9Q8NDG6 1382 aaKnown RBP23.32■■□□□ 1.32
NCKIPSD-201ENST00000294129 DHX57Q6P158 1386 aaKnown RBP23.32■■□□□ 1.32
NCKIPSD-201ENST00000294129 FHOD3Q2V2M9 1422 aa23.31■■□□□ 1.32
NCKIPSD-201ENST00000294129 ABCA10Q8WWZ4 1543 aa23.31■■□□□ 1.32
NCKIPSD-201ENST00000294129 NEUROD1Q13562 356 aa23.3■■□□□ 1.32
NCKIPSD-201ENST00000294129 FAM50AQ14320 339 aaKnown RBP23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms