RNA–Protein interactions for RNA: ENST00000290378.4

ACTC1-201, Transcript of actin, alpha, cardiac muscle 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ACTC1, Length 4,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTC1-201ENST00000290378 NISCHQ9Y2I1 1504 aa20.8■□□□□ 0.92
ACTC1-201ENST00000290378 DCAF8L2P0C7V8 631 aa19.57■□□□□ 0.72
ACTC1-201ENST00000290378 SHROOM4Q9ULL8 1493 aa18.98■□□□□ 0.63
ACTC1-201ENST00000290378 SUPT5HO00267 1087 aaKnown RBP18.73■□□□□ 0.59
ACTC1-201ENST00000290378 PCGF6Q9BYE7 350 aa18.21■□□□□ 0.51
ACTC1-201ENST00000290378 PPARGC1BQ86YN6 1023 aaKnown RBP18.03■□□□□ 0.48
ACTC1-201ENST00000290378 HRCP23327 699 aa17.89■□□□□ 0.45
ACTC1-201ENST00000290378 EHMT2Q96KQ7 1210 aa17.86■□□□□ 0.45
ACTC1-201ENST00000290378 PELP1Q8IZL8 1130 aaKnown RBP17.82■□□□□ 0.44
ACTC1-201ENST00000290378 ABCC9O60706 1549 aa17.65■□□□□ 0.42
ACTC1-201ENST00000290378 FAM9AQ8IZU1 332 aaPredicted RBP17.56■□□□□ 0.4
ACTC1-201ENST00000290378 LOC105371045A0A1W2PR82 267 aa17.38■□□□□ 0.37
ACTC1-201ENST00000290378 ZCCHC6Q5VYS8 1495 aaKnown RBP17.33■□□□□ 0.37
ACTC1-201ENST00000290378 PABPN1Q86U42 306 aaKnown RBP eCLIP17.27■□□□□ 0.35
ACTC1-201ENST00000290378 CHIC1Q5VXU3 224 aa17.25■□□□□ 0.35
ACTC1-201ENST00000290378 TTBK1Q5TCY1 1321 aaPredicted RBP17.24■□□□□ 0.35
ACTC1-201ENST00000290378 CCDC180Q9P1Z9 1646 aa17.24■□□□□ 0.35
ACTC1-201ENST00000290378 TRIM41Q8WV44 630 aa17.23■□□□□ 0.35
ACTC1-201ENST00000290378 MYT1Q01538 1121 aa17.2■□□□□ 0.34
ACTC1-201ENST00000290378 SCAF1Q9H7N4 1312 aaKnown RBP17.15■□□□□ 0.34
ACTC1-201ENST00000290378 YTHDC1Q96MU7 727 aaKnown RBP17.1■□□□□ 0.33
ACTC1-201ENST00000290378 TRIM26Q12899 539 aaPredicted RBP17.08■□□□□ 0.33
ACTC1-201ENST00000290378 SCRIBQ14160 1630 aa17.04■□□□□ 0.32
ACTC1-201ENST00000290378 RANGAP1P46060 587 aaPredicted RBP17.03■□□□□ 0.32
ACTC1-201ENST00000290378 ZEB1P37275 1124 aaPredicted RBP16.98■□□□□ 0.31
ACTC1-201ENST00000290378 CCER1Q8TC90 406 aaPredicted RBP16.97■□□□□ 0.31
ACTC1-201ENST00000290378 CENPBP07199 599 aaPredicted RBP16.96■□□□□ 0.31
ACTC1-201ENST00000290378 GTF3C3Q9Y5Q9 886 aa16.91■□□□□ 0.3
ACTC1-201ENST00000290378 MYO15BQ96JP2 1530 aa16.83■□□□□ 0.28
ACTC1-201ENST00000290378 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.82■□□□□ 0.28
ACTC1-201ENST00000290378 UBTFP17480 764 aaKnown RBP16.77■□□□□ 0.28
ACTC1-201ENST00000290378 NEUROD1Q13562 356 aa16.74■□□□□ 0.27
ACTC1-201ENST00000290378 ACIN1Q9UKV3 1341 aaKnown RBP16.72■□□□□ 0.27
ACTC1-201ENST00000290378 DIEXFQ68CQ4 756 aaKnown RBP16.67■□□□□ 0.26
ACTC1-201ENST00000290378 APLP2Q06481 763 aa16.57■□□□□ 0.24
ACTC1-201ENST00000290378 RSF1Q96T23 1441 aaPredicted RBP16.56■□□□□ 0.24
ACTC1-201ENST00000290378 CECR2Q9BXF3 1484 aa16.54■□□□□ 0.24
ACTC1-201ENST00000290378 DCAF1Q9Y4B6 1507 aa16.5■□□□□ 0.23
ACTC1-201ENST00000290378 ATP1B4Q9UN42 357 aaPredicted RBP16.5■□□□□ 0.23
ACTC1-201ENST00000290378 RB1CC1Q8TDY2 1594 aa16.47■□□□□ 0.23
ACTC1-201ENST00000290378 NACADO15069 1562 aa16.46■□□□□ 0.23
ACTC1-201ENST00000290378 HNRNPUL2Q1KMD3 747 aaKnown RBP16.3■□□□□ 0.2
ACTC1-201ENST00000290378 BCANQ96GW7 911 aa16.28■□□□□ 0.2
ACTC1-201ENST00000290378 MROH2BQ7Z745 1585 aa16.28■□□□□ 0.2
ACTC1-201ENST00000290378 BCL11AQ9H165 835 aa16.24■□□□□ 0.19
ACTC1-201ENST00000290378 ITGAEP38570 1179 aa16.2■□□□□ 0.18
ACTC1-201ENST00000290378 CSRNP3Q8WYN3 585 aa16.18■□□□□ 0.18
ACTC1-201ENST00000290378 ERICH6Q7L0X2 663 aa16.14■□□□□ 0.17
ACTC1-201ENST00000290378 ZNF316A6NFI3 1004 aaPredicted RBP16.14■□□□□ 0.17
ACTC1-201ENST00000290378 MIER1Q8N108 512 aa16.12■□□□□ 0.17
ACTC1-201ENST00000290378 WIZO95785 1651 aa16.09■□□□□ 0.17
ACTC1-201ENST00000290378 BAZ1AQ9NRL2 1556 aaPredicted RBP16.09■□□□□ 0.17
ACTC1-201ENST00000290378 P3H3Q8IVL6 736 aa16.04■□□□□ 0.16
ACTC1-201ENST00000290378 BAZ1BQ9UIG0 1483 aaKnown RBP16■□□□□ 0.15
ACTC1-201ENST00000290378 NEFLP07196 543 aa15.98■□□□□ 0.15
ACTC1-201ENST00000290378 CCDC88BA6NC98 1476 aa15.96■□□□□ 0.15
ACTC1-201ENST00000290378 ANP32EQ9BTT0 268 aa15.96■□□□□ 0.15
ACTC1-201ENST00000290378 ABCC8Q09428 1581 aa15.95■□□□□ 0.14
ACTC1-201ENST00000290378 ARID3CA6NKF2 412 aa15.91■□□□□ 0.14
ACTC1-201ENST00000290378 SOGA1O94964 1423 aa15.89■□□□□ 0.13
ACTC1-201ENST00000290378 WRNQ14191 1432 aaPredicted RBP eCLIP15.89■□□□□ 0.13
ACTC1-201ENST00000290378 FBLN2P98095 1184 aa15.88■□□□□ 0.13
ACTC1-201ENST00000290378 FAM50AQ14320 339 aaKnown RBP15.81■□□□□ 0.12
ACTC1-201ENST00000290378 FKBP8Q14318 412 aa15.8■□□□□ 0.12
ACTC1-201ENST00000290378 SMARCA4P51532 1647 aa15.8■□□□□ 0.12
ACTC1-201ENST00000290378 CNGB1Q14028 1251 aaPredicted RBP15.75■□□□□ 0.11
ACTC1-201ENST00000290378 TOP2AP11388 1531 aaKnown RBP15.74■□□□□ 0.11
ACTC1-201ENST00000290378 ATAD2BQ9ULI0 1458 aa15.74■□□□□ 0.11
ACTC1-201ENST00000290378 SUPT16HQ9Y5B9 1047 aaKnown RBP15.74■□□□□ 0.11
ACTC1-201ENST00000290378 CEP162Q5TB80 1403 aa15.72■□□□□ 0.11
ACTC1-201ENST00000290378 RUSC2Q8N2Y8 1516 aa15.69■□□□□ 0.1
ACTC1-201ENST00000290378 TSHZ2Q9NRE2 1034 aa15.68■□□□□ 0.1
ACTC1-201ENST00000290378 CLIP1P30622 1438 aa15.67■□□□□ 0.1
ACTC1-201ENST00000290378 TRIM52Q96A61 297 aa15.65■□□□□ 0.1
ACTC1-201ENST00000290378 PRKCSHP14314 528 aaPredicted RBP15.64■□□□□ 0.09
ACTC1-201ENST00000290378 SMARCA2P51531 1590 aa15.62■□□□□ 0.09
ACTC1-201ENST00000290378 IRX6P78412 446 aaPredicted RBP15.62■□□□□ 0.09
ACTC1-201ENST00000290378 GOLGA3Q08378 1498 aa15.6■□□□□ 0.09
ACTC1-201ENST00000290378 HIRIP3Q9BW71 556 aaPredicted RBP15.59■□□□□ 0.09
ACTC1-201ENST00000290378 TNIKQ9UKE5 1360 aa15.56■□□□□ 0.08
ACTC1-201ENST00000290378 DDX10Q13206 875 aaKnown RBP15.56■□□□□ 0.08
ACTC1-201ENST00000290378 EEA1Q15075 1411 aa15.54■□□□□ 0.08
ACTC1-201ENST00000290378 BICRAQ9NZM4 1560 aa15.54■□□□□ 0.08
ACTC1-201ENST00000290378 NBR1Q14596 966 aa15.53■□□□□ 0.08
ACTC1-201ENST00000290378 KIF27Q86VH2 1401 aa15.53■□□□□ 0.08
ACTC1-201ENST00000290378 CUX2O14529 1486 aa15.51■□□□□ 0.07
ACTC1-201ENST00000290378 CEP164Q9UPV0 1460 aa15.5■□□□□ 0.07
ACTC1-201ENST00000290378 DNAJC5BQ9UF47 199 aa15.5■□□□□ 0.07
ACTC1-201ENST00000290378 KCNH8Q96L42 1107 aa15.49■□□□□ 0.07
ACTC1-201ENST00000290378 MYT1LQ9UL68 1186 aa15.49■□□□□ 0.07
ACTC1-201ENST00000290378 CDK11AQ9UQ88 783 aaPredicted RBP15.49■□□□□ 0.07
ACTC1-201ENST00000290378 RTN4Q9NQC3 1192 aaKnown RBP15.47■□□□□ 0.07
ACTC1-201ENST00000290378 EIF4G1Q04637 1599 aaKnown RBP15.46■□□□□ 0.07
ACTC1-201ENST00000290378 TDRD9Q8NDG6 1382 aaKnown RBP15.45■□□□□ 0.06
ACTC1-201ENST00000290378 CADPSQ9ULU8 1353 aa15.45■□□□□ 0.06
ACTC1-201ENST00000290378 ZNF777Q9ULD5 760 aaPredicted RBP15.44■□□□□ 0.06
ACTC1-201ENST00000290378 RBM19Q9Y4C8 960 aaKnown RBP15.44■□□□□ 0.06
ACTC1-201ENST00000290378 POLR3GLQ9BT43 218 aa15.44■□□□□ 0.06
ACTC1-201ENST00000290378 EIF5BO60841 1220 aaKnown RBP15.43■□□□□ 0.06
ACTC1-201ENST00000290378 UNC13AQ9UPW8 1703 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms