RNA–Protein interactions for RNA: ENST00000274255.10

SKP2-202, Transcript of S-phase kinase associated protein 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKP2, Length 3,759 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP2-202ENST00000274255 NISCHQ9Y2I1 1504 aa20.46■□□□□ 0.87
SKP2-202ENST00000274255 SUPT5HO00267 1087 aaKnown RBP19.84■□□□□ 0.77
SKP2-202ENST00000274255 SHROOM4Q9ULL8 1493 aa19.81■□□□□ 0.76
SKP2-202ENST00000274255 DCAF8L2P0C7V8 631 aa19.8■□□□□ 0.76
SKP2-202ENST00000274255 EHMT2Q96KQ7 1210 aa19.18■□□□□ 0.66
SKP2-202ENST00000274255 PCGF6Q9BYE7 350 aa19.09■□□□□ 0.65
SKP2-202ENST00000274255 PPARGC1BQ86YN6 1023 aaKnown RBP18.81■□□□□ 0.6
SKP2-202ENST00000274255 FAM9AQ8IZU1 332 aaPredicted RBP18.66■□□□□ 0.58
SKP2-202ENST00000274255 LOC105371045A0A1W2PR82 267 aa18.56■□□□□ 0.56
SKP2-202ENST00000274255 TTBK1Q5TCY1 1321 aaPredicted RBP18.5■□□□□ 0.55
SKP2-202ENST00000274255 HRCP23327 699 aa18.49■□□□□ 0.55
SKP2-202ENST00000274255 CHIC1Q5VXU3 224 aa18.39■□□□□ 0.53
SKP2-202ENST00000274255 TRIM41Q8WV44 630 aa17.99■□□□□ 0.47
SKP2-202ENST00000274255 TRIM26Q12899 539 aaPredicted RBP17.9■□□□□ 0.46
SKP2-202ENST00000274255 MYO15BQ96JP2 1530 aa17.9■□□□□ 0.46
SKP2-202ENST00000274255 RANGAP1P46060 587 aaPredicted RBP17.87■□□□□ 0.45
SKP2-202ENST00000274255 YTHDC1Q96MU7 727 aaKnown RBP17.86■□□□□ 0.45
SKP2-202ENST00000274255 CCER1Q8TC90 406 aaPredicted RBP17.86■□□□□ 0.45
SKP2-202ENST00000274255 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.79■□□□□ 0.44
SKP2-202ENST00000274255 ZEB1P37275 1124 aaPredicted RBP17.58■□□□□ 0.4
SKP2-202ENST00000274255 SCAF1Q9H7N4 1312 aaKnown RBP17.47■□□□□ 0.39
SKP2-202ENST00000274255 UBTFP17480 764 aaKnown RBP17.47■□□□□ 0.39
SKP2-202ENST00000274255 CENPBP07199 599 aaPredicted RBP17.42■□□□□ 0.38
SKP2-202ENST00000274255 GTF3C3Q9Y5Q9 886 aa17.41■□□□□ 0.38
SKP2-202ENST00000274255 HNRNPUL2Q1KMD3 747 aaKnown RBP17.4■□□□□ 0.38
SKP2-202ENST00000274255 DIEXFQ68CQ4 756 aaKnown RBP17.36■□□□□ 0.37
SKP2-202ENST00000274255 PELP1Q8IZL8 1130 aaKnown RBP17.33■□□□□ 0.37
SKP2-202ENST00000274255 NEUROD1Q13562 356 aa17.3■□□□□ 0.36
SKP2-202ENST00000274255 APLP2Q06481 763 aa17.26■□□□□ 0.35
SKP2-202ENST00000274255 ITGAEP38570 1179 aa17.18■□□□□ 0.34
SKP2-202ENST00000274255 ACIN1Q9UKV3 1341 aaKnown RBP17.17■□□□□ 0.34
SKP2-202ENST00000274255 ZCCHC6Q5VYS8 1495 aaKnown RBP17.11■□□□□ 0.33
SKP2-202ENST00000274255 DCAF1Q9Y4B6 1507 aa17.08■□□□□ 0.33
SKP2-202ENST00000274255 ATP1B4Q9UN42 357 aaPredicted RBP17.05■□□□□ 0.32
SKP2-202ENST00000274255 BCANQ96GW7 911 aa16.99■□□□□ 0.31
SKP2-202ENST00000274255 PABPN1Q86U42 306 aaKnown RBP eCLIP16.87■□□□□ 0.29
SKP2-202ENST00000274255 MIER1Q8N108 512 aa16.87■□□□□ 0.29
SKP2-202ENST00000274255 ZNF316A6NFI3 1004 aaPredicted RBP16.87■□□□□ 0.29
SKP2-202ENST00000274255 CNGB1Q14028 1251 aaPredicted RBP16.87■□□□□ 0.29
SKP2-202ENST00000274255 ABCC9O60706 1549 aa16.84■□□□□ 0.29
SKP2-202ENST00000274255 SCRIBQ14160 1630 aa16.76■□□□□ 0.27
SKP2-202ENST00000274255 RSF1Q96T23 1441 aaPredicted RBP16.7■□□□□ 0.26
SKP2-202ENST00000274255 CSRNP3Q8WYN3 585 aa16.66■□□□□ 0.26
SKP2-202ENST00000274255 HIRIP3Q9BW71 556 aaPredicted RBP16.65■□□□□ 0.26
SKP2-202ENST00000274255 CCDC180Q9P1Z9 1646 aa16.6■□□□□ 0.25
SKP2-202ENST00000274255 NEFLP07196 543 aa16.56■□□□□ 0.24
SKP2-202ENST00000274255 ERICH6Q7L0X2 663 aa16.52■□□□□ 0.24
SKP2-202ENST00000274255 P3H3Q8IVL6 736 aa16.52■□□□□ 0.23
SKP2-202ENST00000274255 CECR2Q9BXF3 1484 aa16.51■□□□□ 0.23
SKP2-202ENST00000274255 FAM50AQ14320 339 aaKnown RBP16.51■□□□□ 0.23
SKP2-202ENST00000274255 POLR3GLQ9BT43 218 aa16.5■□□□□ 0.23
SKP2-202ENST00000274255 MYT1Q01538 1121 aa16.47■□□□□ 0.23
SKP2-202ENST00000274255 RB1CC1Q8TDY2 1594 aa16.47■□□□□ 0.23
SKP2-202ENST00000274255 TRIM52Q96A61 297 aa16.46■□□□□ 0.23
SKP2-202ENST00000274255 DDX10Q13206 875 aaKnown RBP16.46■□□□□ 0.23
SKP2-202ENST00000274255 FKBP8Q14318 412 aa16.44■□□□□ 0.22
SKP2-202ENST00000274255 SENP3-EIF4A1A0A087X0R7 540 aa16.43■□□□□ 0.22
SKP2-202ENST00000274255 IRX6P78412 446 aaPredicted RBP16.41■□□□□ 0.22
SKP2-202ENST00000274255 CEP162Q5TB80 1403 aa16.39■□□□□ 0.21
SKP2-202ENST00000274255 SOGA1O94964 1423 aa16.38■□□□□ 0.21
SKP2-202ENST00000274255 KCNH8Q96L42 1107 aa16.35■□□□□ 0.21
SKP2-202ENST00000274255 ARID3CA6NKF2 412 aa16.33■□□□□ 0.21
SKP2-202ENST00000274255 SUPT16HQ9Y5B9 1047 aaKnown RBP16.27■□□□□ 0.2
SKP2-202ENST00000274255 ABCC8Q09428 1581 aa16.27■□□□□ 0.19
SKP2-202ENST00000274255 CCDC88BA6NC98 1476 aa16.25■□□□□ 0.19
SKP2-202ENST00000274255 SIN3AQ96ST3 1273 aa16.23■□□□□ 0.19
SKP2-202ENST00000274255 MROH2BQ7Z745 1585 aa16.21■□□□□ 0.19
SKP2-202ENST00000274255 RUSC2Q8N2Y8 1516 aa16.2■□□□□ 0.18
SKP2-202ENST00000274255 CLIP1P30622 1438 aa16.17■□□□□ 0.18
SKP2-202ENST00000274255 KANK4Q5T7N3 995 aaPredicted RBP16.16■□□□□ 0.18
SKP2-202ENST00000274255 ANP32CO43423 234 aa16.16■□□□□ 0.18
SKP2-202ENST00000274255 ZNF326Q5BKZ1 582 aaKnown RBP16.14■□□□□ 0.17
SKP2-202ENST00000274255 HNRNPUQ00839 825 aaKnown RBP eCLIP16.12■□□□□ 0.17
SKP2-202ENST00000274255 TNIKQ9UKE5 1360 aa16.08■□□□□ 0.16
SKP2-202ENST00000274255 FAM9BQ8IZU0 186 aa16.07■□□□□ 0.16
SKP2-202ENST00000274255 TSHZ2Q9NRE2 1034 aa16.07■□□□□ 0.16
SKP2-202ENST00000274255 CHIC2Q9UKJ5 165 aa16.06■□□□□ 0.16
SKP2-202ENST00000274255 WIZO95785 1651 aa16.05■□□□□ 0.16
SKP2-202ENST00000274255 SALL2Q9Y467 1007 aaPredicted RBP16.03■□□□□ 0.16
SKP2-202ENST00000274255 NBR1Q14596 966 aa16.01■□□□□ 0.15
SKP2-202ENST00000274255 ANP32EQ9BTT0 268 aa16.01■□□□□ 0.15
SKP2-202ENST00000274255 CDK11AQ9UQ88 783 aaPredicted RBP16■□□□□ 0.15
SKP2-202ENST00000274255 WRNQ14191 1432 aaPredicted RBP eCLIP15.96■□□□□ 0.15
SKP2-202ENST00000274255 GOLGA3Q08378 1498 aa15.96■□□□□ 0.15
SKP2-202ENST00000274255 NPM2Q86SE8 214 aaKnown RBP15.95■□□□□ 0.14
SKP2-202ENST00000274255 RBM19Q9Y4C8 960 aaKnown RBP15.9■□□□□ 0.14
SKP2-202ENST00000274255 BCL11AQ9H165 835 aa15.89■□□□□ 0.13
SKP2-202ENST00000274255 RRP7BPQ9NSQ0 103 aa15.88■□□□□ 0.13
SKP2-202ENST00000274255 TONSLQ96HA7 1378 aa15.85■□□□□ 0.13
SKP2-202ENST00000274255 B4GALNT3Q6L9W6 998 aa15.84■□□□□ 0.13
SKP2-202ENST00000274255 FOXD1Q16676 465 aa15.79■□□□□ 0.12
SKP2-202ENST00000274255 MRS2Q9HD23 443 aa15.79■□□□□ 0.12
SKP2-202ENST00000274255 RAPGEF2Q9Y4G8 1499 aa15.79■□□□□ 0.12
SKP2-202ENST00000274255 DHX57Q6P158 1386 aaKnown RBP15.78■□□□□ 0.12
SKP2-202ENST00000274255 ZNF777Q9ULD5 760 aaPredicted RBP15.77■□□□□ 0.12
SKP2-202ENST00000274255 VPS8Q8N3P4 1428 aa15.76■□□□□ 0.11
SKP2-202ENST00000274255 CEP164Q9UPV0 1460 aa15.76■□□□□ 0.11
SKP2-202ENST00000274255 RTL5Q5HYW3 569 aaPredicted RBP15.76■□□□□ 0.11
SKP2-202ENST00000274255 BAZ1BQ9UIG0 1483 aaKnown RBP15.75■□□□□ 0.11
SKP2-202ENST00000274255 RTN4Q9NQC3 1192 aaKnown RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms