RNA–Protein interactions for RNA: ENST00000262291.8

VMP1-201, Transcript of vacuole membrane protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMP1, Length 2,712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-201ENST00000262291 NISCHQ9Y2I1 1504 aa29.52■■■□□ 2.32
VMP1-201ENST00000262291 CCDC180Q9P1Z9 1646 aa25.31■■□□□ 1.64
VMP1-201ENST00000262291 SHROOM4Q9ULL8 1493 aa24.95■■□□□ 1.58
VMP1-201ENST00000262291 DCAF8L2P0C7V8 631 aa24.88■■□□□ 1.57
VMP1-201ENST00000262291 ZCCHC6Q5VYS8 1495 aaKnown RBP24.84■■□□□ 1.57
VMP1-201ENST00000262291 SUPT5HO00267 1087 aaKnown RBP24.16■■□□□ 1.46
VMP1-201ENST00000262291 ABCC9O60706 1549 aa24.14■■□□□ 1.45
VMP1-201ENST00000262291 DCAF1Q9Y4B6 1507 aa24.12■■□□□ 1.45
VMP1-201ENST00000262291 SCRIBQ14160 1630 aa23.77■■□□□ 1.4
VMP1-201ENST00000262291 MYO15BQ96JP2 1530 aa23.62■■□□□ 1.37
VMP1-201ENST00000262291 NACADO15069 1562 aa23.56■■□□□ 1.36
VMP1-201ENST00000262291 RB1CC1Q8TDY2 1594 aa23.34■■□□□ 1.33
VMP1-201ENST00000262291 RSF1Q96T23 1441 aaPredicted RBP23.17■■□□□ 1.3
VMP1-201ENST00000262291 CECR2Q9BXF3 1484 aa23.15■■□□□ 1.3
VMP1-201ENST00000262291 CHIC1Q5VXU3 224 aa23.11■■□□□ 1.29
VMP1-201ENST00000262291 PABPN1Q86U42 306 aaKnown RBP eCLIP23.02■■□□□ 1.28
VMP1-201ENST00000262291 UNC13AQ9UPW8 1703 aa22.99■■□□□ 1.27
VMP1-201ENST00000262291 MROH2BQ7Z745 1585 aa22.98■■□□□ 1.27
VMP1-201ENST00000262291 WIZO95785 1651 aa22.83■■□□□ 1.25
VMP1-201ENST00000262291 BICRAQ9NZM4 1560 aa22.75■■□□□ 1.23
VMP1-201ENST00000262291 BAZ1AQ9NRL2 1556 aaPredicted RBP22.7■■□□□ 1.22
VMP1-201ENST00000262291 SMARCA4P51532 1647 aa22.61■■□□□ 1.21
VMP1-201ENST00000262291 LOC105371045A0A1W2PR82 267 aa22.5■■□□□ 1.19
VMP1-201ENST00000262291 TRIM41Q8WV44 630 aa22.48■■□□□ 1.19
VMP1-201ENST00000262291 TOP2AP11388 1531 aaKnown RBP22.4■■□□□ 1.18
VMP1-201ENST00000262291 FAM9AQ8IZU1 332 aaPredicted RBP22.39■■□□□ 1.18
VMP1-201ENST00000262291 CCDC88BA6NC98 1476 aa22.34■■□□□ 1.17
VMP1-201ENST00000262291 EHMT2Q96KQ7 1210 aa22.31■■□□□ 1.16
VMP1-201ENST00000262291 SMARCA2P51531 1590 aa22.28■■□□□ 1.16
VMP1-201ENST00000262291 ATAD2BQ9ULI0 1458 aa22.19■■□□□ 1.14
VMP1-201ENST00000262291 EIF4G1Q04637 1599 aaKnown RBP22.17■■□□□ 1.14
VMP1-201ENST00000262291 ABCC8Q09428 1581 aa22.14■■□□□ 1.13
VMP1-201ENST00000262291 PEG3Q9GZU2 1588 aa22.13■■□□□ 1.13
VMP1-201ENST00000262291 BAZ1BQ9UIG0 1483 aaKnown RBP22.12■■□□□ 1.13
VMP1-201ENST00000262291 PCGF6Q9BYE7 350 aa21.85■■□□□ 1.09
VMP1-201ENST00000262291 NCAPD3P42695 1498 aa21.82■■□□□ 1.08
VMP1-201ENST00000262291 SOGA1O94964 1423 aa21.81■■□□□ 1.08
VMP1-201ENST00000262291 WRNQ14191 1432 aaPredicted RBP eCLIP21.78■■□□□ 1.08
VMP1-201ENST00000262291 RUSC2Q8N2Y8 1516 aa21.75■■□□□ 1.07
VMP1-201ENST00000262291 HMGXB3Q12766 1538 aa21.75■■□□□ 1.07
VMP1-201ENST00000262291 SYNJ1O43426 1573 aa21.71■■□□□ 1.07
VMP1-201ENST00000262291 CC2D2AQ9P2K1 1620 aa21.67■■□□□ 1.06
VMP1-201ENST00000262291 PPARGC1BQ86YN6 1023 aaKnown RBP21.61■■□□□ 1.05
VMP1-201ENST00000262291 CSRNP3Q8WYN3 585 aa21.6■■□□□ 1.05
VMP1-201ENST00000262291 UBTFP17480 764 aaKnown RBP21.54■■□□□ 1.04
VMP1-201ENST00000262291 CFTRP13569 1480 aa21.5■■□□□ 1.03
VMP1-201ENST00000262291 HRCP23327 699 aa21.47■■□□□ 1.03
VMP1-201ENST00000262291 TRIM26Q12899 539 aaPredicted RBP21.47■■□□□ 1.03
VMP1-201ENST00000262291 EEA1Q15075 1411 aa21.45■■□□□ 1.02
VMP1-201ENST00000262291 DNAJC5BQ9UF47 199 aa21.44■■□□□ 1.02
VMP1-201ENST00000262291 TOP2BQ02880 1626 aa21.44■■□□□ 1.02
VMP1-201ENST00000262291 CUX1P39880 1505 aa21.42■■□□□ 1.02
VMP1-201ENST00000262291 CADPSQ9ULU8 1353 aa21.41■■□□□ 1.02
VMP1-201ENST00000262291 TTBK1Q5TCY1 1321 aaPredicted RBP21.4■■□□□ 1.02
VMP1-201ENST00000262291 RANGAP1P46060 587 aaPredicted RBP21.4■■□□□ 1.02
VMP1-201ENST00000262291 CEP162Q5TB80 1403 aa21.38■■□□□ 1.01
VMP1-201ENST00000262291 TNIKQ9UKE5 1360 aa21.35■■□□□ 1.01
VMP1-201ENST00000262291 BIVM-ERCC5R4GMW8 1640 aa21.35■■□□□ 1.01
VMP1-201ENST00000262291 GOLGA3Q08378 1498 aa21.35■■□□□ 1.01
VMP1-201ENST00000262291 NESP48681 1621 aa21.33■■□□□ 1
VMP1-201ENST00000262291 RAPGEF2Q9Y4G8 1499 aa21.29■■□□□ 1
VMP1-201ENST00000262291 CEP164Q9UPV0 1460 aa21.27■■□□□ 1
VMP1-201ENST00000262291 PRDM2Q13029 1718 aa21.23■□□□□ 0.99
VMP1-201ENST00000262291 FANCD2Q9BXW9 1451 aa21.22■□□□□ 0.99
VMP1-201ENST00000262291 KIF21BO75037 1637 aa21.21■□□□□ 0.99
VMP1-201ENST00000262291 KIF27Q86VH2 1401 aa21.15■□□□□ 0.98
VMP1-201ENST00000262291 FGD5Q6ZNL6 1462 aa21.14■□□□□ 0.97
VMP1-201ENST00000262291 CUX2O14529 1486 aa21.13■□□□□ 0.97
VMP1-201ENST00000262291 CLIP1P30622 1438 aa21.12■□□□□ 0.97
VMP1-201ENST00000262291 PRXQ9BXM0 1461 aa21.08■□□□□ 0.96
VMP1-201ENST00000262291 RAD54L2Q9Y4B4 1467 aa21.05■□□□□ 0.96
VMP1-201ENST00000262291 TOPBP1Q92547 1522 aa21.01■□□□□ 0.95
VMP1-201ENST00000262291 IGF1RP08069 1367 aa21■□□□□ 0.95
VMP1-201ENST00000262291 LAMC3Q9Y6N6 1575 aa20.97■□□□□ 0.95
VMP1-201ENST00000262291 DNMBPQ6XZF7 1577 aa20.97■□□□□ 0.95
VMP1-201ENST00000262291 ERICH3Q5RHP9 1530 aa20.96■□□□□ 0.95
VMP1-201ENST00000262291 POLA1P09884 1462 aaPredicted RBP20.96■□□□□ 0.95
VMP1-201ENST00000262291 URB2Q14146 1524 aaKnown RBP20.95■□□□□ 0.94
VMP1-201ENST00000262291 PELP1Q8IZL8 1130 aaKnown RBP20.92■□□□□ 0.94
VMP1-201ENST00000262291 CARMIL1Q5VZK9 1371 aa20.91■□□□□ 0.94
VMP1-201ENST00000262291 VPS8Q8N3P4 1428 aa20.91■□□□□ 0.94
VMP1-201ENST00000262291 PDS5BQ9NTI5 1447 aa20.9■□□□□ 0.94
VMP1-201ENST00000262291 KIF21AQ7Z4S6 1674 aa20.89■□□□□ 0.93
VMP1-201ENST00000262291 APLP2Q06481 763 aa20.87■□□□□ 0.93
VMP1-201ENST00000262291 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.86■□□□□ 0.93
VMP1-201ENST00000262291 TDRD9Q8NDG6 1382 aaKnown RBP20.85■□□□□ 0.93
VMP1-201ENST00000262291 ARAP1Q96P48 1450 aa20.85■□□□□ 0.93
VMP1-201ENST00000262291 ABCA10Q8WWZ4 1543 aa20.82■□□□□ 0.92
VMP1-201ENST00000262291 P3H3Q8IVL6 736 aa20.8■□□□□ 0.92
VMP1-201ENST00000262291 ARHGAP35Q9NRY4 1499 aa20.76■□□□□ 0.91
VMP1-201ENST00000262291 HNRNPUL2Q1KMD3 747 aaKnown RBP20.74■□□□□ 0.91
VMP1-201ENST00000262291 KANK4Q5T7N3 995 aaPredicted RBP20.73■□□□□ 0.91
VMP1-201ENST00000262291 CCER1Q8TC90 406 aaPredicted RBP20.72■□□□□ 0.91
VMP1-201ENST00000262291 GAPVD1Q14C86 1478 aa20.67■□□□□ 0.9
VMP1-201ENST00000262291 WDR97A6NE52 1622 aa20.66■□□□□ 0.9
VMP1-201ENST00000262291 ATP1B4Q9UN42 357 aaPredicted RBP20.66■□□□□ 0.9
VMP1-201ENST00000262291 ZEB1P37275 1124 aaPredicted RBP20.64■□□□□ 0.9
VMP1-201ENST00000262291 AQRO60306 1485 aaKnown RBP eCLIP20.62■□□□□ 0.897e-21■■■■□ 23.2
VMP1-201ENST00000262291 MRC2Q9UBG0 1479 aa20.62■□□□□ 0.89
VMP1-201ENST00000262291 ABCA5Q8WWZ7 1642 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms