RNA–Protein interactions for RNA: ENST00000259254.8

GYPC-201, Transcript of glycophorin C (Gerbich blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GYPC, Length 1,246 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GYPC-201ENST00000259254 NISCHQ9Y2I1 1504 aa36.32■■■■□ 3.4
GYPC-201ENST00000259254 CCDC180Q9P1Z9 1646 aa32.38■■■□□ 2.77
GYPC-201ENST00000259254 ABCC9O60706 1549 aa31.93■■■□□ 2.7
GYPC-201ENST00000259254 RB1CC1Q8TDY2 1594 aa30.6■■■□□ 2.49
GYPC-201ENST00000259254 NACADO15069 1562 aa30.47■■■□□ 2.47
GYPC-201ENST00000259254 ZCCHC6Q5VYS8 1495 aaKnown RBP30.4■■■□□ 2.46
GYPC-201ENST00000259254 DCAF8L2P0C7V8 631 aa30.29■■■□□ 2.44
GYPC-201ENST00000259254 MYO15BQ96JP2 1530 aa30.17■■■□□ 2.42
GYPC-201ENST00000259254 DCAF1Q9Y4B6 1507 aa30.02■■■□□ 2.4
GYPC-201ENST00000259254 UNC13AQ9UPW8 1703 aa29.99■■■□□ 2.39
GYPC-201ENST00000259254 PABPN1Q86U42 306 aaKnown RBP eCLIP29.71■■■□□ 2.35
GYPC-201ENST00000259254 BICRAQ9NZM4 1560 aa29.69■■■□□ 2.34
GYPC-201ENST00000259254 DNAJC5BQ9UF47 199 aa29.58■■■□□ 2.33
GYPC-201ENST00000259254 SCRIBQ14160 1630 aa29.46■■■□□ 2.31
GYPC-201ENST00000259254 SHROOM4Q9ULL8 1493 aa29.36■■■□□ 2.29
GYPC-201ENST00000259254 EIF4G1Q04637 1599 aaKnown RBP28.93■■■□□ 2.22
GYPC-201ENST00000259254 CC2D2AQ9P2K1 1620 aa28.91■■■□□ 2.22
GYPC-201ENST00000259254 CECR2Q9BXF3 1484 aa28.73■■■□□ 2.19
GYPC-201ENST00000259254 SMARCA4P51532 1647 aa28.16■■■□□ 2.1
GYPC-201ENST00000259254 BAZ1AQ9NRL2 1556 aaPredicted RBP28.11■■■□□ 2.09
GYPC-201ENST00000259254 NCAPD3P42695 1498 aa28.08■■■□□ 2.09
GYPC-201ENST00000259254 ATAD2BQ9ULI0 1458 aa28.05■■■□□ 2.08
GYPC-201ENST00000259254 MROH2BQ7Z745 1585 aa28.03■■■□□ 2.08
GYPC-201ENST00000259254 SMARCA2P51531 1590 aa28.03■■■□□ 2.08
GYPC-201ENST00000259254 RSF1Q96T23 1441 aaPredicted RBP27.98■■■□□ 2.07
GYPC-201ENST00000259254 HMGXB3Q12766 1538 aa27.96■■■□□ 2.07
GYPC-201ENST00000259254 SUPT5HO00267 1087 aaKnown RBP27.95■■■□□ 2.06
GYPC-201ENST00000259254 PEG3Q9GZU2 1588 aa27.9■■■□□ 2.06
GYPC-201ENST00000259254 BAZ1BQ9UIG0 1483 aaKnown RBP27.81■■■□□ 2.04
GYPC-201ENST00000259254 WIZO95785 1651 aa27.73■■■□□ 2.03
GYPC-201ENST00000259254 ERCC6Q03468 1493 aa27.54■■■□□ 2
GYPC-201ENST00000259254 NESP48681 1621 aa27.52■■■□□ 2
GYPC-201ENST00000259254 TOP2AP11388 1531 aaKnown RBP27.5■■□□□ 1.99
GYPC-201ENST00000259254 LAMC3Q9Y6N6 1575 aa27.45■■□□□ 1.99
GYPC-201ENST00000259254 CUX2O14529 1486 aa27.41■■□□□ 1.98
GYPC-201ENST00000259254 KIF21AQ7Z4S6 1674 aa27.27■■□□□ 1.96
GYPC-201ENST00000259254 THOC2Q8NI27 1593 aaKnown RBP27.26■■□□□ 1.95
GYPC-201ENST00000259254 CADPSQ9ULU8 1353 aa27.22■■□□□ 1.95
GYPC-201ENST00000259254 PDS5BQ9NTI5 1447 aa27.22■■□□□ 1.95
GYPC-201ENST00000259254 CCDC88BA6NC98 1476 aa27.19■■□□□ 1.94
GYPC-201ENST00000259254 CFTRP13569 1480 aa27.01■■□□□ 1.91
GYPC-201ENST00000259254 MRC2Q9UBG0 1479 aa26.99■■□□□ 1.91
GYPC-201ENST00000259254 CEP164Q9UPV0 1460 aa26.95■■□□□ 1.91
GYPC-201ENST00000259254 WDR62O43379 1518 aa26.94■■□□□ 1.9
GYPC-201ENST00000259254 FANCD2Q9BXW9 1451 aa26.93■■□□□ 1.9
GYPC-201ENST00000259254 DNAJC5Q9H3Z4 198 aa26.93■■□□□ 1.9
GYPC-201ENST00000259254 PRDM2Q13029 1718 aa26.92■■□□□ 1.9
GYPC-201ENST00000259254 URB2Q14146 1524 aaKnown RBP26.71■■□□□ 1.87
GYPC-201ENST00000259254 TOPBP1Q92547 1522 aa26.49■■□□□ 1.83
GYPC-201ENST00000259254 ABCC8Q09428 1581 aa26.46■■□□□ 1.83
GYPC-201ENST00000259254 DNMBPQ6XZF7 1577 aa26.45■■□□□ 1.82
GYPC-201ENST00000259254 CHIC1Q5VXU3 224 aa26.41■■□□□ 1.82
GYPC-201ENST00000259254 IFT140Q96RY7 1462 aa26.4■■□□□ 1.82
GYPC-201ENST00000259254 WRNQ14191 1432 aaPredicted RBP eCLIP26.39■■□□□ 1.81
GYPC-201ENST00000259254 TRIM41Q8WV44 630 aa26.33■■□□□ 1.81
GYPC-201ENST00000259254 ZNF608Q9ULD9 1512 aaPredicted RBP26.3■■□□□ 1.8
GYPC-201ENST00000259254 TARBP1Q13395 1621 aaKnown RBP26.25■■□□□ 1.79
GYPC-201ENST00000259254 EIF4G3O43432 1585 aaKnown RBP26.24■■□□□ 1.79
GYPC-201ENST00000259254 CUX1P39880 1505 aa26.24■■□□□ 1.79
GYPC-201ENST00000259254 SYNJ1O43426 1573 aa26.24■■□□□ 1.79
GYPC-201ENST00000259254 POLA1P09884 1462 aaPredicted RBP26.23■■□□□ 1.79
GYPC-201ENST00000259254 TOP2BQ02880 1626 aa26.17■■□□□ 1.78
GYPC-201ENST00000259254 BIVM-ERCC5R4GMW8 1640 aa26.14■■□□□ 1.77
GYPC-201ENST00000259254 OSCARQ8IYS5 282 aa26.13■■□□□ 1.77
GYPC-201ENST00000259254 FGD5Q6ZNL6 1462 aa26.11■■□□□ 1.77
GYPC-201ENST00000259254 RAD54L2Q9Y4B4 1467 aa26.1■■□□□ 1.77
GYPC-201ENST00000259254 AQRO60306 1485 aaKnown RBP eCLIP26.09■■□□□ 1.772e-7■■■■□ 23.9
GYPC-201ENST00000259254 SOGA1O94964 1423 aa26.07■■□□□ 1.76
GYPC-201ENST00000259254 WDR97A6NE52 1622 aa26.04■■□□□ 1.76
GYPC-201ENST00000259254 CHD1O14646 1710 aa26.01■■□□□ 1.75
GYPC-201ENST00000259254 TDRD9Q8NDG6 1382 aaKnown RBP25.96■■□□□ 1.75
GYPC-201ENST00000259254 SNAPC4Q5SXM2 1469 aa25.87■■□□□ 1.73
GYPC-201ENST00000259254 RIMBP3CA6NJZ7 1639 aa25.86■■□□□ 1.73
GYPC-201ENST00000259254 RIMBP3BA6NNM3 1639 aa25.86■■□□□ 1.73
GYPC-201ENST00000259254 RIMBP3Q9UFD9 1639 aa25.86■■□□□ 1.73
GYPC-201ENST00000259254 PBRM1Q86U86 1689 aa25.86■■□□□ 1.73
GYPC-201ENST00000259254 ABCA10Q8WWZ4 1543 aa25.85■■□□□ 1.73
GYPC-201ENST00000259254 GRIN2BQ13224 1484 aa25.85■■□□□ 1.73
GYPC-201ENST00000259254 FAM9AQ8IZU1 332 aaPredicted RBP25.84■■□□□ 1.73
GYPC-201ENST00000259254 MAGI1Q96QZ7 1491 aaPredicted RBP25.83■■□□□ 1.73
GYPC-201ENST00000259254 ABCA5Q8WWZ7 1642 aa25.82■■□□□ 1.72
GYPC-201ENST00000259254 FBLN2P98095 1184 aa25.79■■□□□ 1.72
GYPC-201ENST00000259254 KIF27Q86VH2 1401 aa25.79■■□□□ 1.72
GYPC-201ENST00000259254 GAPVD1Q14C86 1478 aa25.79■■□□□ 1.72
GYPC-201ENST00000259254 ARHGEF11O15085 1522 aa25.78■■□□□ 1.72
GYPC-201ENST00000259254 RUSC2Q8N2Y8 1516 aa25.76■■□□□ 1.71
GYPC-201ENST00000259254 EEA1Q15075 1411 aa25.74■■□□□ 1.71
GYPC-201ENST00000259254 SYNJ2O15056 1496 aa25.72■■□□□ 1.71
GYPC-201ENST00000259254 CLASP1Q7Z460 1538 aa25.68■■□□□ 1.7
GYPC-201ENST00000259254 CHMP7Q8WUX9 453 aaPredicted RBP25.68■■□□□ 1.7
GYPC-201ENST00000259254 CSRNP3Q8WYN3 585 aa25.65■■□□□ 1.7
GYPC-201ENST00000259254 ADAMTS12P58397 1594 aa25.6■■□□□ 1.69
GYPC-201ENST00000259254 IGF1RP08069 1367 aa25.57■■□□□ 1.68
GYPC-201ENST00000259254 ARAP1Q96P48 1450 aa25.55■■□□□ 1.68
GYPC-201ENST00000259254 ERICH3Q5RHP9 1530 aa25.54■■□□□ 1.68
GYPC-201ENST00000259254 GRIN2AQ12879 1464 aa25.53■■□□□ 1.68
GYPC-201ENST00000259254 EHMT2Q96KQ7 1210 aa25.5■■□□□ 1.67
GYPC-201ENST00000259254 CYB5RLQ6IPT4 315 aa25.49■■□□□ 1.67
GYPC-201ENST00000259254 FHAD1B1AJZ9 1412 aa25.47■■□□□ 1.67
GYPC-201ENST00000259254 CARMIL1Q5VZK9 1371 aa25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms