RNA–Protein interactions for RNA: ENST00000246117.8

NCLN-201, Transcript of nicalin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NCLN, Length 4,005 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCLN-201ENST00000246117 UPF1Q92900 1129 aaKnown RBP eCLIP13.55□□□□□ -0.243e-12■■■■■ 112.2
NCLN-201ENST00000246117 SF3B1O75533 1304 aaKnown RBP eCLIP13.61□□□□□ -0.232e-6■■■■■ 71
NCLN-201ENST00000246117 AKAP1Q92667 903 aaKnown RBP eCLIP12.79□□□□□ -0.364e-13■■■■■ 59.6
NCLN-201ENST00000246117 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.45■□□□□ 0.068e-7■■■■■ 58.5
NCLN-201ENST00000246117 PCBP1Q15365 356 aaKnown RBP eCLIP13.58□□□□□ -0.245e-7■■■■■ 40.1
NCLN-201ENST00000246117 EFTUD2Q15029 972 aaKnown RBP eCLIP14.34□□□□□ -0.117e-7■■■■■ 34.1
NCLN-201ENST00000246117 DDX6P26196 483 aaKnown RBP eCLIP12.99□□□□□ -0.332e-8■■■■■ 29
NCLN-201ENST00000246117 SF3B4Q15427 424 aaKnown RBP eCLIP12.94□□□□□ -0.345e-7■■■■■ 27.3
NCLN-201ENST00000246117 EWSR1Q01844 656 aaKnown RBP eCLIP11.89□□□□□ -0.512e-6■■■■■ 27
NCLN-201ENST00000246117 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.64□□□□□ -0.076e-7■■■■□ 26.5
NCLN-201ENST00000246117 DDX3XO00571 662 aaKnown RBP eCLIP14.67□□□□□ -0.065e-33■■■■□ 24.6
NCLN-201ENST00000246117 PCBP2Q15366 365 aaKnown RBP eCLIP13.44□□□□□ -0.261e-6■■■■□ 24.4
NCLN-201ENST00000246117 GTF2F1P35269 517 aaKnown RBP eCLIP15.75■□□□□ 0.115e-11■■■■□ 24.4
NCLN-201ENST00000246117 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.03■□□□□ 0.162e-6■■■■□ 23.9
NCLN-201ENST00000246117 WDR43Q15061 677 aaKnown RBP eCLIP18.32■□□□□ 0.526e-7■■■■□ 23.5
NCLN-201ENST00000246117 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.52■□□□□ 0.44e-8■■■■□ 22.9
NCLN-201ENST00000246117 SF3A3Q12874 501 aaKnown RBP eCLIP15.48■□□□□ 0.071e-7■■■■□ 22.8
NCLN-201ENST00000246117 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.66□□□□□ -0.384e-7■■■■□ 22.6
NCLN-201ENST00000246117 AQRO60306 1485 aaKnown RBP eCLIP18.11■□□□□ 0.494e-7■■■■□ 22.5
NCLN-201ENST00000246117 PRPF4O43172 522 aaKnown RBP eCLIP13.99□□□□□ -0.172e-7■■■■□ 21.5
NCLN-201ENST00000246117 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.34□□□□□ -0.271e-6■■■■□ 20.3
NCLN-201ENST00000246117 FTOQ9C0B1 505 aaKnown RBP eCLIP15.99■□□□□ 0.152e-6■■■■□ 19.3
NCLN-201ENST00000246117 HNRNPKP61978 463 aaKnown RBP eCLIP12.54□□□□□ -0.42e-6■■■□□ 18.9
NCLN-201ENST00000246117 RBFOX2O43251 390 aaKnown RBP eCLIP11.34□□□□□ -0.593e-7■■■□□ 18.8
NCLN-201ENST00000246117 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.47□□□□□ -0.251e-6■■■□□ 18.7
NCLN-201ENST00000246117 SND1Q7KZF4 910 aaKnown RBP eCLIP15.32■□□□□ 0.041e-7■■■□□ 18.7
NCLN-201ENST00000246117 HNRNPMP52272 730 aaKnown RBP eCLIP18.27■□□□□ 0.527e-10■■■□□ 18.3
NCLN-201ENST00000246117 SMNDC1O75940 238 aaKnown RBP eCLIP14.06□□□□□ -0.161e-8■■■□□ 17.9
NCLN-201ENST00000246117 LSM11P83369 360 aaKnown RBP eCLIP12.91□□□□□ -0.345e-7■■■□□ 17.5
NCLN-201ENST00000246117 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.98□□□□□ -0.493e-7■■■□□ 17.5
NCLN-201ENST00000246117 AARSP49588 968 aaKnown RBP eCLIP14.53□□□□□ -0.085e-11■■■□□ 17.5
NCLN-201ENST00000246117 FKBP4Q02790 459 aaKnown RBP eCLIP16.41■□□□□ 0.225e-6■■■□□ 17
NCLN-201ENST00000246117 NONOQ15233 471 aaKnown RBP eCLIP15.34■□□□□ 0.052e-6■■■□□ 15.9
NCLN-201ENST00000246117 PABPC4Q13310 644 aaKnown RBP eCLIP15.23■□□□□ 0.031e-6■■■□□ 15.6
NCLN-201ENST00000246117 RPS3P23396 243 aaKnown RBP eCLIP13.07□□□□□ -0.325e-7■■■□□ 14.8
NCLN-201ENST00000246117 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.24□□□□□ -0.139e-9■■□□□ 14.2
NCLN-201ENST00000246117 TIAL1Q01085 375 aaKnown RBP eCLIP13.07□□□□□ -0.321e-13■■□□□ 14.1
NCLN-201ENST00000246117 ZC3H11AO75152 810 aaKnown RBP eCLIP14.23□□□□□ -0.131e-6■■□□□ 13.4
NCLN-201ENST00000246117 PPIGQ13427 754 aaKnown RBP eCLIP13.19□□□□□ -0.37e-7■■□□□ 13
NCLN-201ENST00000246117 RBM22Q9NW64 420 aaKnown RBP eCLIP14.06□□□□□ -0.168e-6■■□□□ 12.7
NCLN-201ENST00000246117 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.53■□□□□ 0.249e-7■■□□□ 12.3
NCLN-201ENST00000246117 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.78□□□□□ -0.045e-7■■□□□ 12.1
NCLN-201ENST00000246117 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.5■□□□□ 0.072e-7■■□□□ 11.8
NCLN-201ENST00000246117 YBX3P16989 372 aaKnown RBP eCLIP14.06□□□□□ -0.162e-7■■□□□ 11.4
NCLN-201ENST00000246117 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.88■□□□□ 0.613e-6■□□□□ 11.3
NCLN-201ENST00000246117 HNRNPCP07910 306 aaKnown RBP eCLIP13.91□□□□□ -0.182e-8■□□□□ 11.2
NCLN-201ENST00000246117 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.91□□□□□ -0.182e-6■□□□□ 10.8
NCLN-201ENST00000246117 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.43□□□□□ -0.12e-6■□□□□ 10.7
NCLN-201ENST00000246117 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.25□□□□□ -0.133e-8■□□□□ 10.2
NCLN-201ENST00000246117 NKRFO15226 690 aaKnown RBP eCLIP14.8□□□□□ -0.048e-6■□□□□ 9.5
NCLN-201ENST00000246117 PABPN1Q86U42 306 aaKnown RBP eCLIP20.82■□□□□ 0.928e-6■□□□□ 8.9
NCLN-201ENST00000246117 LARP4Q71RC2 724 aaKnown RBP eCLIP13.4□□□□□ -0.261e-7■□□□□ 8.8
NCLN-201ENST00000246117 SRSF1Q07955 248 aaKnown RBP eCLIP10.71□□□□□ -0.695e-9■□□□□ 8.5
Retrieved 53 of 53 RNA–protein pairs in 23.3 ms