RNA–Protein interactions for RNA: ENST00000218364.4

HTATSF1-201, Transcript of HIV-1 Tat specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HTATSF1, Length 2,775 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HTATSF1-201ENST00000218364 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.64■■□□□ 1.373e-10■■■■■ 153.8
HTATSF1-201ENST00000218364 FUBP3Q96I24 572 aaKnown RBP eCLIP21.87■■□□□ 1.092e-10■■■■■ 52.7
HTATSF1-201ENST00000218364 DDX3XO00571 662 aaKnown RBP eCLIP24.14■■□□□ 1.458e-17■■■■■ 39.9
HTATSF1-201ENST00000218364 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.97■■□□□ 1.752e-7■■■■■ 37.7
HTATSF1-201ENST00000218364 AQRO60306 1485 aaKnown RBP eCLIP31.72■■■□□ 2.672e-8■■■■■ 35.8
HTATSF1-201ENST00000218364 PABPC4Q13310 644 aaKnown RBP eCLIP24.13■■□□□ 1.453e-16■■■■■ 35.7
HTATSF1-201ENST00000218364 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP25.56■■□□□ 1.682e-8■■■■■ 28.6
HTATSF1-201ENST00000218364 RBFOX2O43251 390 aaKnown RBP eCLIP18.38■□□□□ 0.531e-8■■■■■ 28.2
HTATSF1-201ENST00000218364 FXR2P51116 673 aaKnown RBP eCLIP24.55■■□□□ 1.521e-6■■■■□ 26.5
HTATSF1-201ENST00000218364 TRA2AQ13595 282 aaKnown RBP eCLIP18.9■□□□□ 0.623e-8■■■■□ 26.3
HTATSF1-201ENST00000218364 ZNF800Q2TB10 664 aaPredicted RBP eCLIP20.94■□□□□ 0.947e-7■■■■□ 25.2
HTATSF1-201ENST00000218364 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.33■■■□□ 2.291e-7■■■■□ 20.5
HTATSF1-201ENST00000218364 AGGF1Q8N302 714 aaeCLIP23.43■■□□□ 1.343e-9■■■■□ 19.9
HTATSF1-201ENST00000218364 PUM2Q8TB72 1066 aaKnown RBP eCLIP21.24■□□□□ 0.992e-7■■■□□ 19.1
HTATSF1-201ENST00000218364 SUB1P53999 127 aaKnown RBP eCLIP17.86■□□□□ 0.457e-7■■■□□ 18.1
HTATSF1-201ENST00000218364 ZNF622Q969S3 477 aaKnown RBP eCLIP23.54■■□□□ 1.361e-7■■■□□ 17.1
HTATSF1-201ENST00000218364 PUM1Q14671 1186 aaKnown RBP eCLIP21.13■□□□□ 0.975e-7■■■□□ 17.1
HTATSF1-201ENST00000218364 CPSF6Q16630 551 aaKnown RBP eCLIP21.54■■□□□ 1.043e-6■■■□□ 16.5
HTATSF1-201ENST00000218364 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.21■■□□□ 1.471e-6■■□□□ 13.4
HTATSF1-201ENST00000218364 NIPBLQ6KC79 2804 aaeCLIP15.15■□□□□ 0.025e-6■■□□□ 13.4
HTATSF1-201ENST00000218364 FMR1Q06787 632 aaKnown RBP eCLIP25.36■■□□□ 1.658e-11■■□□□ 12.1
HTATSF1-201ENST00000218364 EIF4G2P78344 907 aaKnown RBP eCLIP30.79■■■□□ 2.524e-7■□□□□ 10.8
HTATSF1-201ENST00000218364 DDX6P26196 483 aaKnown RBP eCLIP20.84■□□□□ 0.933e-6■□□□□ 10
HTATSF1-201ENST00000218364 XRCC6P12956 609 aaKnown RBP eCLIP27.81■■■□□ 2.047e-6■□□□□ 8.8
Retrieved 24 of 24 RNA–protein pairs in 7.9 ms