RNA–Protein interactions for RNA: ENST00000217133.1

TUBB1-201, Transcript of tubulin beta 1 class VI, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TUBB1, Length 3,496 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBB1-201ENST00000217133 NISCHQ9Y2I1 1504 aa19.3■□□□□ 0.68
TUBB1-201ENST00000217133 CCDC180Q9P1Z9 1646 aa16.63■□□□□ 0.25
TUBB1-201ENST00000217133 DCAF8L2P0C7V8 631 aa16.55■□□□□ 0.24
TUBB1-201ENST00000217133 SHROOM4Q9ULL8 1493 aa16.39■□□□□ 0.21
TUBB1-201ENST00000217133 ABCC9O60706 1549 aa16.37■□□□□ 0.21
TUBB1-201ENST00000217133 SUPT5HO00267 1087 aaKnown RBP16.32■□□□□ 0.2
TUBB1-201ENST00000217133 HRCP23327 699 aa16.15■□□□□ 0.18
TUBB1-201ENST00000217133 ZCCHC6Q5VYS8 1495 aaKnown RBP16.13■□□□□ 0.17
TUBB1-201ENST00000217133 PCGF6Q9BYE7 350 aa15.98■□□□□ 0.15
TUBB1-201ENST00000217133 CHIC1Q5VXU3 224 aa15.91■□□□□ 0.14
TUBB1-201ENST00000217133 MYO15BQ96JP2 1530 aa15.84■□□□□ 0.13
TUBB1-201ENST00000217133 PPARGC1BQ86YN6 1023 aaKnown RBP15.82■□□□□ 0.12
TUBB1-201ENST00000217133 DCAF1Q9Y4B6 1507 aa15.73■□□□□ 0.11
TUBB1-201ENST00000217133 NACADO15069 1562 aa15.65■□□□□ 0.1
TUBB1-201ENST00000217133 SCRIBQ14160 1630 aa15.63■□□□□ 0.09
TUBB1-201ENST00000217133 RB1CC1Q8TDY2 1594 aa15.6■□□□□ 0.09
TUBB1-201ENST00000217133 PABPN1Q86U42 306 aaKnown RBP eCLIP15.58■□□□□ 0.097e-7■■■■□ 25.6
TUBB1-201ENST00000217133 LOC105371045A0A1W2PR82 267 aa15.55■□□□□ 0.08
TUBB1-201ENST00000217133 TRIM26Q12899 539 aaPredicted RBP15.48■□□□□ 0.07
TUBB1-201ENST00000217133 PELP1Q8IZL8 1130 aaKnown RBP15.41■□□□□ 0.06
TUBB1-201ENST00000217133 ZEB1P37275 1124 aaPredicted RBP15.35■□□□□ 0.05
TUBB1-201ENST00000217133 UNC13AQ9UPW8 1703 aa15.24■□□□□ 0.03
TUBB1-201ENST00000217133 CECR2Q9BXF3 1484 aa15.2■□□□□ 0.02
TUBB1-201ENST00000217133 BICRAQ9NZM4 1560 aa15.19■□□□□ 0.02
TUBB1-201ENST00000217133 SCAF1Q9H7N4 1312 aaKnown RBP15.15■□□□□ 0.02
TUBB1-201ENST00000217133 FAM9AQ8IZU1 332 aaPredicted RBP15.12■□□□□ 0.01
TUBB1-201ENST00000217133 TRIM41Q8WV44 630 aa15.12■□□□□ 0.01
TUBB1-201ENST00000217133 EHMT2Q96KQ7 1210 aa15.07■□□□□ 0
TUBB1-201ENST00000217133 RSF1Q96T23 1441 aaPredicted RBP15.02□□□□□ -0.01
TUBB1-201ENST00000217133 MROH2BQ7Z745 1585 aa15.01□□□□□ -0.01
TUBB1-201ENST00000217133 ACIN1Q9UKV3 1341 aaKnown RBP14.9□□□□□ -0.02
TUBB1-201ENST00000217133 CCER1Q8TC90 406 aaPredicted RBP14.89□□□□□ -0.03
TUBB1-201ENST00000217133 BAZ1AQ9NRL2 1556 aaPredicted RBP14.86□□□□□ -0.03
TUBB1-201ENST00000217133 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.86□□□□□ -0.03
TUBB1-201ENST00000217133 CENPBP07199 599 aaPredicted RBP14.84□□□□□ -0.03
TUBB1-201ENST00000217133 WIZO95785 1651 aa14.84□□□□□ -0.03
TUBB1-201ENST00000217133 NEUROD1Q13562 356 aa14.84□□□□□ -0.03
TUBB1-201ENST00000217133 SMARCA4P51532 1647 aa14.82□□□□□ -0.04
TUBB1-201ENST00000217133 GTF3C3Q9Y5Q9 886 aa14.79□□□□□ -0.04
TUBB1-201ENST00000217133 EIF4G1Q04637 1599 aaKnown RBP14.78□□□□□ -0.04
TUBB1-201ENST00000217133 MYT1Q01538 1121 aa14.78□□□□□ -0.04
TUBB1-201ENST00000217133 DIEXFQ68CQ4 756 aaKnown RBP14.77□□□□□ -0.04
TUBB1-201ENST00000217133 DNAJC5BQ9UF47 199 aa14.75□□□□□ -0.05
TUBB1-201ENST00000217133 ATAD2BQ9ULI0 1458 aa14.72□□□□□ -0.05
TUBB1-201ENST00000217133 TTBK1Q5TCY1 1321 aaPredicted RBP14.68□□□□□ -0.06
TUBB1-201ENST00000217133 BAZ1BQ9UIG0 1483 aaKnown RBP14.63□□□□□ -0.07
TUBB1-201ENST00000217133 CC2D2AQ9P2K1 1620 aa14.62□□□□□ -0.07
TUBB1-201ENST00000217133 SMARCA2P51531 1590 aa14.57□□□□□ -0.08
TUBB1-201ENST00000217133 YTHDC1Q96MU7 727 aaKnown RBP14.57□□□□□ -0.08
TUBB1-201ENST00000217133 CCDC88BA6NC98 1476 aa14.56□□□□□ -0.08
TUBB1-201ENST00000217133 TOP2AP11388 1531 aaKnown RBP14.56□□□□□ -0.08
TUBB1-201ENST00000217133 NCAPD3P42695 1498 aa14.55□□□□□ -0.08
TUBB1-201ENST00000217133 ZNF316A6NFI3 1004 aaPredicted RBP14.52□□□□□ -0.08
TUBB1-201ENST00000217133 PEG3Q9GZU2 1588 aa14.52□□□□□ -0.08
TUBB1-201ENST00000217133 UBTFP17480 764 aaKnown RBP14.4□□□□□ -0.1
TUBB1-201ENST00000217133 HMGXB3Q12766 1538 aa14.4□□□□□ -0.1
TUBB1-201ENST00000217133 CEP162Q5TB80 1403 aa14.39□□□□□ -0.11
TUBB1-201ENST00000217133 WRNQ14191 1432 aaPredicted RBP eCLIP14.38□□□□□ -0.11
TUBB1-201ENST00000217133 MIER1Q8N108 512 aa14.37□□□□□ -0.11
TUBB1-201ENST00000217133 HNRNPUL2Q1KMD3 747 aaKnown RBP14.34□□□□□ -0.11
TUBB1-201ENST00000217133 NESP48681 1621 aa14.32□□□□□ -0.12
TUBB1-201ENST00000217133 TNIKQ9UKE5 1360 aa14.3□□□□□ -0.12
TUBB1-201ENST00000217133 CSRNP3Q8WYN3 585 aa14.29□□□□□ -0.12
TUBB1-201ENST00000217133 ABCC8Q09428 1581 aa14.28□□□□□ -0.12
TUBB1-201ENST00000217133 CADPSQ9ULU8 1353 aa14.27□□□□□ -0.13
TUBB1-201ENST00000217133 SOGA1O94964 1423 aa14.25□□□□□ -0.13
TUBB1-201ENST00000217133 APLP2Q06481 763 aa14.22□□□□□ -0.13
TUBB1-201ENST00000217133 CFTRP13569 1480 aa14.21□□□□□ -0.13
TUBB1-201ENST00000217133 EEA1Q15075 1411 aa14.19□□□□□ -0.14
TUBB1-201ENST00000217133 GOLGA3Q08378 1498 aa14.15□□□□□ -0.14
TUBB1-201ENST00000217133 RUSC2Q8N2Y8 1516 aa14.13□□□□□ -0.15
TUBB1-201ENST00000217133 RANGAP1P46060 587 aaPredicted RBP14.11□□□□□ -0.15
TUBB1-201ENST00000217133 CLSPNQ9HAW4 1339 aa14.11□□□□□ -0.15
TUBB1-201ENST00000217133 FANCD2Q9BXW9 1451 aa14.1□□□□□ -0.15
TUBB1-201ENST00000217133 SUPT16HQ9Y5B9 1047 aaKnown RBP14.08□□□□□ -0.16
TUBB1-201ENST00000217133 CLIP1P30622 1438 aa14.06□□□□□ -0.16
TUBB1-201ENST00000217133 SYNJ1O43426 1573 aa14.04□□□□□ -0.16
TUBB1-201ENST00000217133 PDS5BQ9NTI5 1447 aa14.03□□□□□ -0.16
TUBB1-201ENST00000217133 CEP164Q9UPV0 1460 aa14.02□□□□□ -0.17
TUBB1-201ENST00000217133 CUX1P39880 1505 aa14□□□□□ -0.17
TUBB1-201ENST00000217133 LAMC3Q9Y6N6 1575 aa14□□□□□ -0.17
TUBB1-201ENST00000217133 VPS8Q8N3P4 1428 aa14□□□□□ -0.17
TUBB1-201ENST00000217133 ERCC6Q03468 1493 aa13.99□□□□□ -0.17
TUBB1-201ENST00000217133 TSHZ2Q9NRE2 1034 aa13.96□□□□□ -0.17
TUBB1-201ENST00000217133 ANP32EQ9BTT0 268 aa13.95□□□□□ -0.18
TUBB1-201ENST00000217133 URB2Q14146 1524 aaKnown RBP13.93□□□□□ -0.18
TUBB1-201ENST00000217133 RAD54L2Q9Y4B4 1467 aa13.92□□□□□ -0.18
TUBB1-201ENST00000217133 DHX57Q6P158 1386 aaKnown RBP13.92□□□□□ -0.18
TUBB1-201ENST00000217133 KIF21AQ7Z4S6 1674 aa13.91□□□□□ -0.18
TUBB1-201ENST00000217133 FGD5Q6ZNL6 1462 aa13.91□□□□□ -0.18
TUBB1-201ENST00000217133 BCANQ96GW7 911 aa13.9□□□□□ -0.18
TUBB1-201ENST00000217133 TOPBP1Q92547 1522 aa13.9□□□□□ -0.18
TUBB1-201ENST00000217133 TOP2BQ02880 1626 aa13.88□□□□□ -0.19
TUBB1-201ENST00000217133 KIF21BO75037 1637 aa13.88□□□□□ -0.19
TUBB1-201ENST00000217133 TDRD9Q8NDG6 1382 aaKnown RBP13.87□□□□□ -0.19
TUBB1-201ENST00000217133 RAPGEF2Q9Y4G8 1499 aa13.86□□□□□ -0.19
TUBB1-201ENST00000217133 POLA1P09884 1462 aaPredicted RBP13.85□□□□□ -0.19
TUBB1-201ENST00000217133 ITGAEP38570 1179 aa13.85□□□□□ -0.19
TUBB1-201ENST00000217133 CUX2O14529 1486 aa13.84□□□□□ -0.19
TUBB1-201ENST00000217133 MRC2Q9UBG0 1479 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms