RNA–Protein interactions for RNA: ENST00000216727.8

PABPN1-201, Transcript of poly(A) binding protein nuclear 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PABPN1, Length 2,001 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPN1-201ENST00000216727 TIA1P31483 386 aaKnown RBP eCLIP28.62■■■□□ 2.174e-16■■■■■ 56.4
PABPN1-201ENST00000216727 SF3B1O75533 1304 aaKnown RBP eCLIP30.77■■■□□ 2.525e-8■■■■■ 42.1
PABPN1-201ENST00000216727 GTF2F1P35269 517 aaKnown RBP eCLIP33.21■■■□□ 2.911e-11■■■■■ 33.7
PABPN1-201ENST00000216727 LIN28BQ6ZN17 250 aaKnown RBP eCLIP30.23■■■□□ 2.431e-8■■■■□ 26.3
PABPN1-201ENST00000216727 AQRO60306 1485 aaKnown RBP eCLIP45.14■■■■■ 4.826e-8■■■■□ 24.8
PABPN1-201ENST00000216727 DDX42Q86XP3 938 aaKnown RBP eCLIP31.55■■■□□ 2.645e-9■■■■□ 23
PABPN1-201ENST00000216727 PCBP2Q15366 365 aaKnown RBP eCLIP29.31■■■□□ 2.289e-14■■■■□ 22.5
PABPN1-201ENST00000216727 PABPC4Q13310 644 aaKnown RBP eCLIP32.96■■■□□ 2.877e-7■■■■□ 21.5
PABPN1-201ENST00000216727 DDX55Q8NHQ9 600 aaKnown RBP eCLIP32.75■■■□□ 2.832e-9■■■■□ 21.3
PABPN1-201ENST00000216727 SF3B4Q15427 424 aaKnown RBP eCLIP25.9■■□□□ 1.743e-9■■■■□ 20.9
PABPN1-201ENST00000216727 PABPN1Q86U42 306 aaKnown RBP eCLIP49.99■■■■■ 5.597e-24■■■■□ 20
PABPN1-201ENST00000216727 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP29.95■■■□□ 2.395e-9■■■■□ 19.8
PABPN1-201ENST00000216727 PUM2Q8TB72 1066 aaKnown RBP eCLIP28.57■■■□□ 2.167e-15■■■■□ 19.8
PABPN1-201ENST00000216727 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP23.1■■□□□ 1.291e-12■■■■□ 19.6
PABPN1-201ENST00000216727 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP30.68■■■□□ 2.52e-20■■■□□ 19.2
PABPN1-201ENST00000216727 EFTUD2Q15029 972 aaKnown RBP eCLIP30.64■■■□□ 2.52e-7■■■□□ 19.1
PABPN1-201ENST00000216727 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP30.97■■■□□ 2.551e-25■■■□□ 19
PABPN1-201ENST00000216727 PRPF4O43172 522 aaKnown RBP eCLIP30.66■■■□□ 2.53e-10■■■□□ 18.8
PABPN1-201ENST00000216727 XRCC6P12956 609 aaKnown RBP eCLIP35.16■■■■□ 3.224e-16■■■□□ 18.2
PABPN1-201ENST00000216727 BUD13Q9BRD0 619 aaKnown RBP eCLIP31.9■■■□□ 2.72e-30■■■□□ 18.1
PABPN1-201ENST00000216727 DDX6P26196 483 aaKnown RBP eCLIP29.61■■■□□ 2.336e-16■■■□□ 17.8
PABPN1-201ENST00000216727 LSM11P83369 360 aaKnown RBP eCLIP27.65■■■□□ 2.027e-9■■■□□ 17.7
PABPN1-201ENST00000216727 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP31.73■■■□□ 2.673e-6■■■□□ 17.7
PABPN1-201ENST00000216727 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP29.4■■■□□ 2.35e-6■■■□□ 17.5
PABPN1-201ENST00000216727 PPIGQ13427 754 aaKnown RBP eCLIP29.69■■■□□ 2.342e-13■■■□□ 17.4
PABPN1-201ENST00000216727 CPEB4Q17RY0 729 aaKnown RBP eCLIP27.42■■□□□ 1.981e-6■■■□□ 16.9
PABPN1-201ENST00000216727 WDR43Q15061 677 aaKnown RBP eCLIP39.64■■■■□ 3.944e-6■■■□□ 16.5
PABPN1-201ENST00000216727 U2AF1Q01081 240 aaKnown RBP eCLIP38.94■■■■□ 3.827e-10■■■□□ 16.4
PABPN1-201ENST00000216727 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP33.17■■■□□ 2.98e-11■■■□□ 16.3
PABPN1-201ENST00000216727 SERBP1Q8NC51 408 aaKnown RBP eCLIP30.29■■■□□ 2.449e-7■■■□□ 15
PABPN1-201ENST00000216727 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP26.67■■□□□ 1.862e-11■■□□□ 14.4
PABPN1-201ENST00000216727 RBFOX2O43251 390 aaKnown RBP eCLIP24.54■■□□□ 1.523e-11■■□□□ 14.3
PABPN1-201ENST00000216727 GRSF1Q12849 480 aaKnown RBP eCLIP28.47■■■□□ 2.154e-69■■□□□ 14.1
PABPN1-201ENST00000216727 LARP4Q71RC2 724 aaKnown RBP eCLIP29.4■■■□□ 2.33e-20■■□□□ 14
PABPN1-201ENST00000216727 ZC3H11AO75152 810 aaKnown RBP eCLIP32.07■■■□□ 2.722e-9■■□□□ 14
PABPN1-201ENST00000216727 UTP3Q9NQZ2 479 aaKnown RBP eCLIP32■■■□□ 2.716e-8■■□□□ 14
PABPN1-201ENST00000216727 U2AF2P26368 475 aaKnown RBP eCLIP34.46■■■■□ 3.114e-24■■□□□ 13.9
PABPN1-201ENST00000216727 DDX24Q9GZR7 859 aaKnown RBP eCLIP35.35■■■■□ 3.251e-11■■□□□ 13.8
PABPN1-201ENST00000216727 SF3A3Q12874 501 aaKnown RBP eCLIP30.37■■■□□ 2.451e-7■■□□□ 13.8
PABPN1-201ENST00000216727 FTOQ9C0B1 505 aaKnown RBP eCLIP34.56■■■■□ 3.122e-10■■□□□ 12.9
PABPN1-201ENST00000216727 AARSP49588 968 aaKnown RBP eCLIP31.75■■■□□ 2.678e-7■■□□□ 12.8
PABPN1-201ENST00000216727 KHSRPQ92945 711 aaKnown RBP eCLIP31.13■■■□□ 2.571e-8■■□□□ 12.8
PABPN1-201ENST00000216727 EIF4G2P78344 907 aaKnown RBP eCLIP41.94■■■■■ 4.33e-7■■□□□ 12.5
PABPN1-201ENST00000216727 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP37.15■■■■□ 3.542e-15■■□□□ 12.5
PABPN1-201ENST00000216727 RBM22Q9NW64 420 aaKnown RBP eCLIP30.25■■■□□ 2.431e-14■■□□□ 11.9
PABPN1-201ENST00000216727 FKBP4Q02790 459 aaKnown RBP eCLIP35.49■■■■□ 3.273e-10■■□□□ 11.7
PABPN1-201ENST00000216727 ZNF622Q969S3 477 aaKnown RBP eCLIP34.16■■■■□ 3.062e-8■■□□□ 11.7
PABPN1-201ENST00000216727 DDX3XO00571 662 aaKnown RBP eCLIP32.22■■■□□ 2.755e-8■■□□□ 11.6
PABPN1-201ENST00000216727 QKIQ96PU8 341 aaKnown RBP eCLIP30.78■■■□□ 2.522e-13■■□□□ 11.4
PABPN1-201ENST00000216727 PCBP1Q15365 356 aaKnown RBP eCLIP31.55■■■□□ 2.645e-7■■□□□ 11.4
PABPN1-201ENST00000216727 ZRANB2O95218 330 aaKnown RBP eCLIP32.24■■■□□ 2.753e-7■□□□□ 11.1
PABPN1-201ENST00000216727 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP44.27■■■■■ 4.681e-10■□□□□ 11
PABPN1-201ENST00000216727 GPKOWQ92917 476 aaPredicted RBP eCLIP33.96■■■■□ 3.032e-8■□□□□ 11
PABPN1-201ENST00000216727 CDC40O60508 579 aaKnown RBP eCLIP27.06■■□□□ 1.922e-6■□□□□ 11
PABPN1-201ENST00000216727 SMNDC1O75940 238 aaKnown RBP eCLIP28.79■■■□□ 2.28e-8■□□□□ 11
PABPN1-201ENST00000216727 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP27.6■■■□□ 2.012e-8■□□□□ 10.9
PABPN1-201ENST00000216727 SRSF1Q07955 248 aaKnown RBP eCLIP23.3■■□□□ 1.324e-11■□□□□ 10.8
PABPN1-201ENST00000216727 ZNF800Q2TB10 664 aaPredicted RBP eCLIP27.02■■□□□ 1.923e-8■□□□□ 10.8
PABPN1-201ENST00000216727 GRWD1Q9BQ67 446 aaKnown RBP eCLIP41.73■■■■■ 4.272e-11■□□□□ 10.7
PABPN1-201ENST00000216727 XRN2Q9H0D6 950 aaKnown RBP eCLIP30.56■■■□□ 2.482e-38■□□□□ 10.5
PABPN1-201ENST00000216727 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP42.68■■■■■ 4.423e-15■□□□□ 10.2
PABPN1-201ENST00000216727 NCBP2P52298 156 aaKnown RBP eCLIP28.1■■■□□ 2.098e-21■□□□□ 9.8
PABPN1-201ENST00000216727 FUBP3Q96I24 572 aaKnown RBP eCLIP30.58■■■□□ 2.492e-6■□□□□ 9.2
PABPN1-201ENST00000216727 RBM15Q96T37 977 aaKnown RBP eCLIP31.02■■■□□ 2.561e-11■□□□□ 9.2
PABPN1-201ENST00000216727 NOLC1Q14978 699 aaKnown RBP eCLIP33.72■■■□□ 2.998e-9■□□□□ 9.1
PABPN1-201ENST00000216727 FUSP35637 526 aaKnown RBP eCLIP18.43■□□□□ 0.544e-15■□□□□ 8.9
PABPN1-201ENST00000216727 SDAD1Q9NVU7 687 aaKnown RBP eCLIP29.74■■■□□ 2.352e-11■□□□□ 8.8
PABPN1-201ENST00000216727 G3BP1Q13283 466 aaKnown RBP eCLIP36.29■■■■□ 3.48e-7■□□□□ 8.4
PABPN1-201ENST00000216727 EWSR1Q01844 656 aaKnown RBP eCLIP24.77■■□□□ 1.563e-7■□□□□ 8.4
PABPN1-201ENST00000216727 SRSF9Q13242 221 aaKnown RBP eCLIP20.92■□□□□ 0.948e-30■□□□□ 8.3
PABPN1-201ENST00000216727 RBM5P52756 815 aaKnown RBP eCLIP33.82■■■■□ 31e-6■□□□□ 8
PABPN1-201ENST00000216727 SRSF7Q16629 238 aaKnown RBP eCLIP25.38■■□□□ 1.654e-7■□□□□ 8
Retrieved 72 of 72 RNA–protein pairs in 6.9 ms