RNA–Protein interactions for RNA: ENST00000216605.12

MTHFD1-201, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MTHFD1, Length 3,136 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-201ENST00000216605 NISCHQ9Y2I1 1504 aa19.01■□□□□ 0.63
MTHFD1-201ENST00000216605 CCDC180Q9P1Z9 1646 aa16.3■□□□□ 0.2
MTHFD1-201ENST00000216605 DCAF8L2P0C7V8 631 aa16.25■□□□□ 0.19
MTHFD1-201ENST00000216605 SHROOM4Q9ULL8 1493 aa16.11■□□□□ 0.17
MTHFD1-201ENST00000216605 ZCCHC6Q5VYS8 1495 aaKnown RBP15.96■□□□□ 0.14
MTHFD1-201ENST00000216605 SUPT5HO00267 1087 aaKnown RBP15.66■□□□□ 0.1
MTHFD1-201ENST00000216605 ABCC9O60706 1549 aa15.65■□□□□ 0.1
MTHFD1-201ENST00000216605 DCAF1Q9Y4B6 1507 aa15.53■□□□□ 0.08
MTHFD1-201ENST00000216605 SCRIBQ14160 1630 aa15.32■□□□□ 0.04
MTHFD1-201ENST00000216605 NACADO15069 1562 aa15.24■□□□□ 0.03
MTHFD1-201ENST00000216605 MYO15BQ96JP2 1530 aa15.24■□□□□ 0.03
MTHFD1-201ENST00000216605 RB1CC1Q8TDY2 1594 aa15.13■□□□□ 0.01
MTHFD1-201ENST00000216605 SLC24A1O60721 1099 aa15.11■□□□□ 0.01
MTHFD1-201ENST00000216605 PABPN1Q86U42 306 aaKnown RBP eCLIP14.94□□□□□ -0.02
MTHFD1-201ENST00000216605 PELP1Q8IZL8 1130 aaKnown RBP14.92□□□□□ -0.02
MTHFD1-201ENST00000216605 RSF1Q96T23 1441 aaPredicted RBP14.9□□□□□ -0.02
MTHFD1-201ENST00000216605 CECR2Q9BXF3 1484 aa14.87□□□□□ -0.03
MTHFD1-201ENST00000216605 CHIC1Q5VXU3 224 aa14.87□□□□□ -0.03
MTHFD1-201ENST00000216605 MROH2BQ7Z745 1585 aa14.76□□□□□ -0.05
MTHFD1-201ENST00000216605 MYT1Q01538 1121 aa14.75□□□□□ -0.05
MTHFD1-201ENST00000216605 UNC13AQ9UPW8 1703 aa14.72□□□□□ -0.05
MTHFD1-201ENST00000216605 BAZ1AQ9NRL2 1556 aaPredicted RBP14.67□□□□□ -0.06
MTHFD1-201ENST00000216605 WIZO95785 1651 aa14.65□□□□□ -0.06
MTHFD1-201ENST00000216605 TRIM41Q8WV44 630 aa14.61□□□□□ -0.07
MTHFD1-201ENST00000216605 BICRAQ9NZM4 1560 aa14.59□□□□□ -0.07
MTHFD1-201ENST00000216605 SMARCA4P51532 1647 aa14.55□□□□□ -0.08
MTHFD1-201ENST00000216605 FAM9AQ8IZU1 332 aaPredicted RBP14.52□□□□□ -0.09
MTHFD1-201ENST00000216605 LOC105371045A0A1W2PR82 267 aa14.47□□□□□ -0.09
MTHFD1-201ENST00000216605 EHMT2Q96KQ7 1210 aa14.46□□□□□ -0.09
MTHFD1-201ENST00000216605 TOP2AP11388 1531 aaKnown RBP14.42□□□□□ -0.1
MTHFD1-201ENST00000216605 CCDC88BA6NC98 1476 aa14.38□□□□□ -0.11
MTHFD1-201ENST00000216605 BAZ1BQ9UIG0 1483 aaKnown RBP14.33□□□□□ -0.12
MTHFD1-201ENST00000216605 ATAD2BQ9ULI0 1458 aa14.32□□□□□ -0.12
MTHFD1-201ENST00000216605 SMARCA2P51531 1590 aa14.3□□□□□ -0.12
MTHFD1-201ENST00000216605 EIF4G1Q04637 1599 aaKnown RBP14.22□□□□□ -0.13
MTHFD1-201ENST00000216605 TTBK1Q5TCY1 1321 aaPredicted RBP14.22□□□□□ -0.13
MTHFD1-201ENST00000216605 ABCC8Q09428 1581 aa14.21□□□□□ -0.13
MTHFD1-201ENST00000216605 PEG3Q9GZU2 1588 aa14.21□□□□□ -0.13
MTHFD1-201ENST00000216605 HRCP23327 699 aa14.18□□□□□ -0.14
MTHFD1-201ENST00000216605 NCAPD3P42695 1498 aa14.1□□□□□ -0.15
MTHFD1-201ENST00000216605 PCGF6Q9BYE7 350 aa14.09□□□□□ -0.15
MTHFD1-201ENST00000216605 WRNQ14191 1432 aaPredicted RBP eCLIP14.08□□□□□ -0.15
MTHFD1-201ENST00000216605 UBTFP17480 764 aaKnown RBP14.04□□□□□ -0.16
MTHFD1-201ENST00000216605 HMGXB3Q12766 1538 aa14.03□□□□□ -0.16
MTHFD1-201ENST00000216605 SOGA1O94964 1423 aa14.02□□□□□ -0.17
MTHFD1-201ENST00000216605 CSRNP3Q8WYN3 585 aa14.01□□□□□ -0.17
MTHFD1-201ENST00000216605 CC2D2AQ9P2K1 1620 aa13.99□□□□□ -0.17
MTHFD1-201ENST00000216605 RUSC2Q8N2Y8 1516 aa13.94□□□□□ -0.18
MTHFD1-201ENST00000216605 PPARGC1BQ86YN6 1023 aaKnown RBP13.94□□□□□ -0.18
MTHFD1-201ENST00000216605 RANGAP1P46060 587 aaPredicted RBP13.93□□□□□ -0.18
MTHFD1-201ENST00000216605 SYNJ1O43426 1573 aa13.92□□□□□ -0.18
MTHFD1-201ENST00000216605 EEA1Q15075 1411 aa13.9□□□□□ -0.18
MTHFD1-201ENST00000216605 CADPSQ9ULU8 1353 aa13.88□□□□□ -0.19
MTHFD1-201ENST00000216605 TRIM26Q12899 539 aaPredicted RBP13.88□□□□□ -0.19
MTHFD1-201ENST00000216605 CFTRP13569 1480 aa13.87□□□□□ -0.19
MTHFD1-201ENST00000216605 PRKCSHP14314 528 aaPredicted RBP13.86□□□□□ -0.19
MTHFD1-201ENST00000216605 GOLGA3Q08378 1498 aa13.79□□□□□ -0.2
MTHFD1-201ENST00000216605 PLPPR3Q6T4P5 718 aa13.79□□□□□ -0.2
MTHFD1-201ENST00000216605 TOP2BQ02880 1626 aa13.79□□□□□ -0.2
MTHFD1-201ENST00000216605 DNAJC5BQ9UF47 199 aa13.79□□□□□ -0.2
MTHFD1-201ENST00000216605 CEP162Q5TB80 1403 aa13.78□□□□□ -0.2
MTHFD1-201ENST00000216605 TNIKQ9UKE5 1360 aa13.77□□□□□ -0.2
MTHFD1-201ENST00000216605 CUX1P39880 1505 aa13.76□□□□□ -0.21
MTHFD1-201ENST00000216605 CEP164Q9UPV0 1460 aa13.76□□□□□ -0.21
MTHFD1-201ENST00000216605 NESP48681 1621 aa13.75□□□□□ -0.21
MTHFD1-201ENST00000216605 DAXXQ9UER7 740 aaPredicted RBP13.74□□□□□ -0.21
MTHFD1-201ENST00000216605 FANCD2Q9BXW9 1451 aa13.73□□□□□ -0.21
MTHFD1-201ENST00000216605 KIF27Q86VH2 1401 aa13.72□□□□□ -0.21
MTHFD1-201ENST00000216605 BIVM-ERCC5R4GMW8 1640 aa13.7□□□□□ -0.22
MTHFD1-201ENST00000216605 APLP2Q06481 763 aa13.69□□□□□ -0.22
MTHFD1-201ENST00000216605 RAPGEF2Q9Y4G8 1499 aa13.69□□□□□ -0.22
MTHFD1-201ENST00000216605 CUX2O14529 1486 aa13.67□□□□□ -0.22
MTHFD1-201ENST00000216605 CLIP1P30622 1438 aa13.65□□□□□ -0.22
MTHFD1-201ENST00000216605 FGD5Q6ZNL6 1462 aa13.65□□□□□ -0.23
MTHFD1-201ENST00000216605 PRDM2Q13029 1718 aa13.63□□□□□ -0.23
MTHFD1-201ENST00000216605 KIF21BO75037 1637 aa13.63□□□□□ -0.23
MTHFD1-201ENST00000216605 PDS5BQ9NTI5 1447 aa13.62□□□□□ -0.23
MTHFD1-201ENST00000216605 ERICH6Q7L0X2 663 aa13.61□□□□□ -0.23
MTHFD1-201ENST00000216605 LAMC3Q9Y6N6 1575 aa13.57□□□□□ -0.24
MTHFD1-201ENST00000216605 RAD54L2Q9Y4B4 1467 aa13.57□□□□□ -0.24
MTHFD1-201ENST00000216605 TOPBP1Q92547 1522 aa13.56□□□□□ -0.24
MTHFD1-201ENST00000216605 PRXQ9BXM0 1461 aa13.55□□□□□ -0.24
MTHFD1-201ENST00000216605 IGF1RP08069 1367 aa13.55□□□□□ -0.24
MTHFD1-201ENST00000216605 CARMIL1Q5VZK9 1371 aa13.55□□□□□ -0.24
MTHFD1-201ENST00000216605 ZEB1P37275 1124 aaPredicted RBP13.54□□□□□ -0.24
MTHFD1-201ENST00000216605 RTN4Q9NQC3 1192 aaKnown RBP13.54□□□□□ -0.24
MTHFD1-201ENST00000216605 DNMBPQ6XZF7 1577 aa13.54□□□□□ -0.24
MTHFD1-201ENST00000216605 POLA1P09884 1462 aaPredicted RBP13.52□□□□□ -0.24
MTHFD1-201ENST00000216605 ATP1B4Q9UN42 357 aaPredicted RBP13.51□□□□□ -0.25
MTHFD1-201ENST00000216605 TDRD9Q8NDG6 1382 aaKnown RBP13.51□□□□□ -0.25
MTHFD1-201ENST00000216605 ERICH3Q5RHP9 1530 aa13.5□□□□□ -0.25
MTHFD1-201ENST00000216605 P3H3Q8IVL6 736 aa13.5□□□□□ -0.25
MTHFD1-201ENST00000216605 URB2Q14146 1524 aaKnown RBP13.49□□□□□ -0.25
MTHFD1-201ENST00000216605 VPS8Q8N3P4 1428 aa13.49□□□□□ -0.25
MTHFD1-201ENST00000216605 CCER1Q8TC90 406 aaPredicted RBP13.46□□□□□ -0.26
MTHFD1-201ENST00000216605 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.45□□□□□ -0.26
MTHFD1-201ENST00000216605 HNRNPUL2Q1KMD3 747 aaKnown RBP13.44□□□□□ -0.26
MTHFD1-201ENST00000216605 ERCC6Q03468 1493 aa13.43□□□□□ -0.26
MTHFD1-201ENST00000216605 KIF21AQ7Z4S6 1674 aa13.43□□□□□ -0.26
MTHFD1-201ENST00000216605 ABCA10Q8WWZ4 1543 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms